| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_0985 |
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| Symbol | |
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| ID | 5732888 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009972 |
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| Strand | - |
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| Start bp | 1128387 |
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| End bp | 1130501 |
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| Gene Length | 2115 bp |
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| Protein Length | 704 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641278119 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001543761 |
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| Protein GI | 159897514 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000494124 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAAAG CAAGCATTGT CATTGTTGAA GATGAAGTAA TTGTGGCCTT GGATATGGCG
CAAGCACTCA AGGCGGCGGG CTATAACGTG ATTGGCAGTT TTAGTTGCGG TGAGGCCGCG
CTCGAATTTA TTGCCGAACA ATGCCCCGAT TTGATCGTGA TGGACATTCA CTTGCAAGGC
CAACTTGATG GCATCAGCAC TGCCGAACAG ATTCAAAAAC GTTATGGCTT GCCGATTATT
TATCTTACCG CCTACTCTGA CTCGGAAACC TTGAGTCGCG CCAAGGCAAC CGAACCGTAT
GCCTACTTGG TCAAACCATT TGAAGATCGT GATTTGCTGA GTGCCATCGA AATGGGTTTG
TATCGCCATC GCGTGGATCA GCGCTTGCGG CGCATGGAAC GTTTATATTC AAGCACCTTA
AACAGCGTTG ATGATGCAAT TATTACAACA GATATCTATG GCTTGATTAA ATTTGCCAAT
CCGACCGCCA GTAGCTTGTT AAATCGACCG AATGATGCAT TAATTGGCCA ATTTATAGGC
GATGTAGTTC AGCTCCTTGA TCGCGAAACC AAAATAACCT ATCAATTTGA TTTGCCCTAT
TTAATCCAAC AAGCTAATCA TCATATGTTA TTACCACGCC AGATTCTGGT GAACGATCAA
GCTAAATTTG TGGTTGCGCC AAGTATTTCG CAAATTCGCG AAGAAGATGA AGCGATTGCT
GGAATTGTCT TAGTGCTGCG TGATATGCGC GATCTTGATG CAGCTGAGGA GCATATTCGC
CATCAAGCCT TGCACGATGC CCTAACTGGC TTGGCCAATC GGAATGTTTT TATCAATCGT
TTGCAATATA TTCTTGATCA TTATCATTTA CACCATCATC ATGCCGTACT ATTTATCGAT
CTTGATCGAT TCAAGATTAT CAATGATAGT TTAGGCCATA TTGTTGGCGA CAAATTATTA
ATTCAAGTTG GTCAACGCTT AGAGCGTTGT ATTCGCTCCC ATGATTTAGT AGCACGGCTG
GGCGGCGATG AATTTACCAT TTTGCTTGAT GGCGTTAATG ATATCCATGA TGTTCTACGA
GTTACCGATC GTTTATTAAG TGTGGTTGCC GAGCCATATC ATATTGATGG CTATAAAGTG
TTTACCGCAG CCAGCATTGG AATTGTGGTG ATTGACGATC ATTACAAGCA TTATCACGAA
GTGTTGCGCG ATGTGGATAG CGCGATGTAT CGGGCTAAAT CGCAAGGTCG TGGTTGTCGC
GCCGTCTTTG ACGAAGAGAT GCATGTTGAG GCCTTGCGTA CATTGCAACT TGAGGTCGAA
TTACGCCGCG CAGTTGAGCG TGACGAATTG TGCTTGCACT ATCAGCCAAT TATCAAACTA
GCCACGGGCG AGTTATCGGG CTTTGAGGCG TTGTTGCGTT GGAATCACCC AACTCAAGGC
GTGATTGGCC CAGCCTCGTT TTTTGCCATT GCCGAAGAAA CTGGGATTTT AGCCCAAATT
GGCTGGAAGT TGTTACGCGA ATCGTGCCAA CAAATTTGTG CTTGGCAAAA CGAATTTCAG
TTTCATCCAC CCTTGGAATT GAGCGTTAAT TTTACCCATC GCCAATTTTT CCAAGCCAAT
CTGATTCAGC AAGTTCAAAG CATTTTAGCT GAAACTGGCA TGCCTGCACG GCATTTGTGC
GCCGAAATTA CAGAAGGCGT GATGATGCAA AGTAATCGTG CGGTCGAAGT GATGCACGAA
TTGCATGATT TGGGCGTGCA AGTGCATATC GATGATTTTG GCACTGGTTA TGCCTCGCTC
AGTTTGTTGC ATAGTGCCCC AATCGATGTT TTAAAGATTG ATCGGACGTT TATTCAGCCC
GAAAGCGGAG CCAGCAAGCA CTCAATCGCC CAGTTAATTA GCTTGATGGC ACGATCGTTG
GGTTGTGCCG TGGTCGCTGA GGGCGTGGAA GATGCCCAAA CTGCCCAGAT GTTGATCGAA
ATGGGTTGCG ATTTTGGTCA AGGCTGGTGG TATTCCAAAG CATTACCACC AGAAGAGGCG
CGGGTATTAA TTCGCAACTT TGCCCAAGGC ACAGTAATGG TCCCGGTTCC ACTGAATGCC
AAAGTTGCTC ACTAG
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| Protein sequence | MSKASIVIVE DEVIVALDMA QALKAAGYNV IGSFSCGEAA LEFIAEQCPD LIVMDIHLQG
QLDGISTAEQ IQKRYGLPII YLTAYSDSET LSRAKATEPY AYLVKPFEDR DLLSAIEMGL
YRHRVDQRLR RMERLYSSTL NSVDDAIITT DIYGLIKFAN PTASSLLNRP NDALIGQFIG
DVVQLLDRET KITYQFDLPY LIQQANHHML LPRQILVNDQ AKFVVAPSIS QIREEDEAIA
GIVLVLRDMR DLDAAEEHIR HQALHDALTG LANRNVFINR LQYILDHYHL HHHHAVLFID
LDRFKIINDS LGHIVGDKLL IQVGQRLERC IRSHDLVARL GGDEFTILLD GVNDIHDVLR
VTDRLLSVVA EPYHIDGYKV FTAASIGIVV IDDHYKHYHE VLRDVDSAMY RAKSQGRGCR
AVFDEEMHVE ALRTLQLEVE LRRAVERDEL CLHYQPIIKL ATGELSGFEA LLRWNHPTQG
VIGPASFFAI AEETGILAQI GWKLLRESCQ QICAWQNEFQ FHPPLELSVN FTHRQFFQAN
LIQQVQSILA ETGMPARHLC AEITEGVMMQ SNRAVEVMHE LHDLGVQVHI DDFGTGYASL
SLLHSAPIDV LKIDRTFIQP ESGASKHSIA QLISLMARSL GCAVVAEGVE DAQTAQMLIE
MGCDFGQGWW YSKALPPEEA RVLIRNFAQG TVMVPVPLNA KVAH
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