| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_01100 |
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| Symbol | |
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| ID | 6776184 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | + |
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| Start bp | 1174097 |
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| End bp | 1176493 |
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| Gene Length | 2397 bp |
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| Protein Length | 798 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 642754537 |
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| Product | sensory box/GGDEF family protein |
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| Protein accession | YP_002125408 |
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| Protein GI | 196155919 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGATA TCACTCGCCC CCTAATACTT GTTGTTGAAG ACAATTTAAT CGAAGCGATG
AACGTTAAAA ATGCGCTGAC CGAAGCAGAT ATGGAGGTGT TAGGTATAGC AAAGACGGAA
AGTGAATTGT ACTCTTTAGT CGAGAAACGT GTTCCCGATC TCATTTTGAT GGACATCGAT
TTGGGCGGTT CAAATTCTGG TATTGAAATA GCAAAAAACA TCACAGAAAG GTATAAAGTG
CCCGTGGTAT TTAGTACCTC TTACTGTGAT GACACGACAA TTTCTAATGC GCTCGCAATT
TCCCCGTATG GATATCTTGT AAAACCGTAC GGCATGCTTT CGCTCACCAC TACTATTCAA
GTTGCGCTGG AAAGAAAAAA AACCGAAAAA GCGCTTGCCT CCTCTAATAG ACGTTTCGCA
ATGGCCTCAA AAATTGCGAA GTTAGGCGTG TTAGAAGTCG ATACTTCTGC TCAGTCTGTC
GTTATCGAGA GTGTAGAAAA CCTTTTTGAT TTTCCACGTA AAATGCCCGT ATCCAAATTC
CTTGCGCTGT TTCCCGAGGA AAAGAAGTCT GAATTAAAAC AGGCGATACA TTTGAAGTCG
AATTACCTTA CAACGCTGCA GCTAAAAGTT GATGGGCAAC CGACTAAATG GTTTCAGGTT
GTCCTTTCCG ACGTAGGGTG GGGCGACGAC TATGTACAAA TTGGCGCTAT ACAAGATATA
TCAATACTAC AAAGTACTCA GTCGAACCTA AGCGTTGCAG ATAAGATAGT CAGTGAAATT
AAAGAAGGTG TTTTAGTCTG TGATGCTGTA GGGCTCATAA TTAAAGCCAA CCAATCCTTA
TGCGATATGC TTGGCACCAA AGTTAAACAT CTAATATCTA CTCACATTAA CAGTGTTTTT
CCTAAAGCGC GAAAACACGA TCCTCGCCCG GACTATCTAA TAGACGGTTT AAGGACTGAG
CTCACTATTG TAAGCGAAGG ACGAAGGTTT CATTTAACCA TGTCGGTAAC CTCATTCGAG
CTTGATGATG GTGAAACAAA TTTCGTAGCC ATTCTCACTG ACGTTTCAGA GCTCAAGTCA
TCGGAAAGTC AACTTAAGTA CTTAGCTTTT ACCGACGCTC TTACGGGTGC TGGGAACCGG
AACCTTTTGA ACAGTATTGT CGAGACTTAT AATGAATCAT GTGAGCCCTG CTCAATTATT
TTTATAGATA TCGACGAATT CAAGCTTATA AATGATACCC ATGGACATGA GGTGGGAGAC
GAGATATTGA GAGCATGCGC AAGTCGATTT AAGGCTGCGT TGAGAGGTGA TGACACTGTT
ATAAGGTTTG GGGGCGACGA GTTTGTAGTC GTGACAAGCA CTACCTGCCA CAAGCTTTTG
AAAAAAATGA CATCGCGGTT ATCTTTATCA TTGAAAAAAA TCTTTAAGAC AACATCAGGT
GACTTTCAAA TTACTGCAAG TATCGGCCTT GCTTCATCTA CAGAAAGTAT GTCGCCAACA
GAACTACTAA AAAATGCAGA TATTGCTATG TTTTCAGCAA AACAAGGCGG TAAAAATGGT
GTTGTCACAT TCAGCGATGA TCTTTCGAAA AATATCGAGT ATAGGTTATT TATTCAACAA
GGGCTTAAAA GCGCAATTCA AAATAAACAA ATCACAGCCT ACTTTCAGCC TATAATAGAT
TCGAAAGGTG AAGTATTAGC CGTGGAGGCG TTAGCTCGCT GGCACATACC CAGCCATGGT
CCAATTAGCC CTGACAAGTT TATTCCTATA GCTGAACGCA CAAAGCATAT TCACGATATT
GGGTTACTAA TGCTAGACGA GGTCTGTTTT GCACTCAAAG CATTAAGCGG ATGGGGTTTT
TTAAACGTAA AATTCAATCT AAATATGTCA GCGGTACAGT TACAGAATGA TGGTGTTGTA
GAGCTGTTTG CTGAACGTTT TGCTTTCCAT AATATAGACC CTGGACGCAT AGTCATAGAA
ATCACTGAAT CCACGCTTCA AAGTGCAAAG GCAAGAGACG TGCTTATAAA GATTAAGGCT
CTTGGCGTCA TCGTTTCCAT CGATGACTTT GGTACAGGTT TTTCTTGCAT ATCAGAGTTA
GCTGACGAAA CGTATGACGC TATCAAAATT GATCGCTCAC TACTGCCCGG TTTTCCACTG
CAAAGTGAAC AAGAAAAACG CAGAGCGCTT ATCATCGAGA ATGTAGTGTC AATGTGTGTG
AAACTCGGTA TGCCTTGCAC TTTAGAAGGC TTAGAGACCA TTGAACAGGT GTCGTTCGCC
AAAAAGATTG GTGCCAAAGC TATGCAAGGG TACTACTTTA CAAGGCCTGT GAACTTGGTC
GGATTAATGG AATACCTGCA AGCAGAGCAT GCTTCACCGC TTGTTAATGT TAGATAA
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| Protein sequence | MTDITRPLIL VVEDNLIEAM NVKNALTEAD MEVLGIAKTE SELYSLVEKR VPDLILMDID
LGGSNSGIEI AKNITERYKV PVVFSTSYCD DTTISNALAI SPYGYLVKPY GMLSLTTTIQ
VALERKKTEK ALASSNRRFA MASKIAKLGV LEVDTSAQSV VIESVENLFD FPRKMPVSKF
LALFPEEKKS ELKQAIHLKS NYLTTLQLKV DGQPTKWFQV VLSDVGWGDD YVQIGAIQDI
SILQSTQSNL SVADKIVSEI KEGVLVCDAV GLIIKANQSL CDMLGTKVKH LISTHINSVF
PKARKHDPRP DYLIDGLRTE LTIVSEGRRF HLTMSVTSFE LDDGETNFVA ILTDVSELKS
SESQLKYLAF TDALTGAGNR NLLNSIVETY NESCEPCSII FIDIDEFKLI NDTHGHEVGD
EILRACASRF KAALRGDDTV IRFGGDEFVV VTSTTCHKLL KKMTSRLSLS LKKIFKTTSG
DFQITASIGL ASSTESMSPT ELLKNADIAM FSAKQGGKNG VVTFSDDLSK NIEYRLFIQQ
GLKSAIQNKQ ITAYFQPIID SKGEVLAVEA LARWHIPSHG PISPDKFIPI AERTKHIHDI
GLLMLDEVCF ALKALSGWGF LNVKFNLNMS AVQLQNDGVV ELFAERFAFH NIDPGRIVIE
ITESTLQSAK ARDVLIKIKA LGVIVSIDDF GTGFSCISEL ADETYDAIKI DRSLLPGFPL
QSEQEKRRAL IIENVVSMCV KLGMPCTLEG LETIEQVSFA KKIGAKAMQG YYFTRPVNLV
GLMEYLQAEH ASPLVNVR
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