| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_5460 |
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| Symbol | |
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| ID | 8229071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 6587655 |
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| End bp | 6589607 |
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| Gene Length | 1953 bp |
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| Protein Length | 650 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644933303 |
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| Product | sigma54 specific transcriptional regulator, Fis family |
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| Protein accession | YP_003089816 |
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| Protein GI | 255039195 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.665291 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.225769 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCAAA AAATACTCAT CGTAGAAGAT TTGTTTGTGG AGGCAAACCA TCTCCGGATC
ATCCTCACCC GGGCGGGCTA CCAGGTGACG GGCATCGCCC GCACTTTTGA AGAGGCCAGG
GAGCTCGTCC GCACCAACCA GCCCGATATT GCATTGCTGG ACATTATGCT GGCCGGGAAA
AAGAACGGTA TCGAGCTCGC CAAATGCCTT AATCAGCAGC ATATTCCATT CATTTTTCTG
TCGGCCAATT CCAGCGAAGA TATTCTCAGG GAAGCCAAGG CTACCCGTCC GAGCGGGTTC
ATTGTGAAGC CGTTCAGGGA AAAAGACCTG CTGATTTCGC TGGAAATCGC GGAATACCTG
CATCAAAACA GCAACGACGC CCAGCTGCGC AAAGAAGCCG TTTTTTTACA GGACCTGAAA
ACCCTGGCCG AAAATGGGGG CGAGTGGACT GCGCAGCTGC TGGGCATTGT GAAGGCATTT
CAGCGTCTTA TCCCTTTCGA CTACGTTTCC GCCGGTTTCT TCGGAAAGAA CTTTTTGCCT
TTCAAGGGAA TGCATTTTCT CCGCATTGGA TTCGACGAAT ACCAGGCGAT GGATGCCGAG
GGGCTGCGGA TGGTCACAAA TGTGCGGGCC GCGGAACTGG CGAATATGAT GGCCGCATTA
CCGCCCATTT CCCAGGTGGA GTATTACAAT GCGGAGAAAT TCAGGAAAAT GTCTGCCGAA
ATTCCGCTTA AAAAGCTGAT CGCGGGCAAA TTCGATATGC GCTCGAACCT GGTGATGCCC
ATTGCCAATA TTTCGATTGA CGGAAAGCAG TTTTTCTTCT GCTTTTACAG CCGCCGCCCC
GATGCCTTCG GGGAACAGGA CCTCGAACTC TGCGCGCGGT TACAGCCTGC GATCGAAAGT
GCGATCCGCA AAATGATCCG TGCCGCGAGC ACATCCGGTC CCGATATGGA ACTGGATCAC
GCGATCGAGG TAATGGCCGG TTCGAGGTCG GAGTCGCCTG TATTCGACTC GATGGTAGGA
CAGAGCCACC TGATGCTCAA TATCCTTGAC CTGATCAGCC AGGTGGCGCC GAGTGACACT
TCTGTGCTCA TCACCGGCGA GAGCGGTACC GGCAAGGAGC ATGTGGCCGA CACCATTCAC
CAGCTGTCTC CGCGAAAAAG CAAGCCGTTC GTGAAAGTGA ATTGCGCCGC ATTGCCCATT
AACCTGATCG AGTCCGAACT TTTCGGGCAT GAGAAAGGCG CATTTACCGG GGCGACCGAG
AGGCGGATCG GGCGGTTTGA ACAGGCGGAC GGCGGGACGA TATTTCTGGA CGAGATCGGC
GATATGCCGC TCGAAGTGCA GGTAAAACTA TTGCGGGTGT TGCAGCAGCG GGAAATCGAG
CGCGTGGGCG GCACCCAGCC GATCAAAATC AACATCCGGG TCATTACAGC CACCAACCGG
AACCTCGAAA GGGCCATTGC CGAAGGTAAA TTCCGCCTGG ACATTTACTA TCGCCTGAAT
GTATTCCCGA TTGCCATGCC TGCGCTCCGG GAGCGGACGG AGGACATTGC ACCGCTAGTG
CATCATTTTA TTGGCTATTT TGGCAGGAAA ACGGGTAAAA ACATCTCGGG CATATCCGAT
CGCGCCCTGG CGATGCTGAT GGACTACGGC TGGCCGGGCA ATATCCGGGA GCTGGAAAAT
GTGATCGAGC GCAGCGTGCT GCTGGCGAAG GGTAATTCGA TCGACACGGT GTATTTACCG
GCCCATCCGG CCGTGGAAGG AATAGCGAAA GCGGGGCCGC CGGTCCTGAA AAATATTTTT
GAAAATGAGC GCGACCACAT TATCAGCGTA TTAAAGGCTT GCGAAGGGAG GATCAGCGGG
GAAAACGGCG CAGCGAAGAT CCTCGCCATT CCGCCTACGA CGCTTAGTTC AAAAATGAAG
AAGCTGGGGA TTAAGAAGAG TATCGGCTTT TGA
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| Protein sequence | MKQKILIVED LFVEANHLRI ILTRAGYQVT GIARTFEEAR ELVRTNQPDI ALLDIMLAGK
KNGIELAKCL NQQHIPFIFL SANSSEDILR EAKATRPSGF IVKPFREKDL LISLEIAEYL
HQNSNDAQLR KEAVFLQDLK TLAENGGEWT AQLLGIVKAF QRLIPFDYVS AGFFGKNFLP
FKGMHFLRIG FDEYQAMDAE GLRMVTNVRA AELANMMAAL PPISQVEYYN AEKFRKMSAE
IPLKKLIAGK FDMRSNLVMP IANISIDGKQ FFFCFYSRRP DAFGEQDLEL CARLQPAIES
AIRKMIRAAS TSGPDMELDH AIEVMAGSRS ESPVFDSMVG QSHLMLNILD LISQVAPSDT
SVLITGESGT GKEHVADTIH QLSPRKSKPF VKVNCAALPI NLIESELFGH EKGAFTGATE
RRIGRFEQAD GGTIFLDEIG DMPLEVQVKL LRVLQQREIE RVGGTQPIKI NIRVITATNR
NLERAIAEGK FRLDIYYRLN VFPIAMPALR ERTEDIAPLV HHFIGYFGRK TGKNISGISD
RALAMLMDYG WPGNIRELEN VIERSVLLAK GNSIDTVYLP AHPAVEGIAK AGPPVLKNIF
ENERDHIISV LKACEGRISG ENGAAKILAI PPTTLSSKMK KLGIKKSIGF
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