| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_5133 |
|---|
| Symbol | |
|---|
| ID | 8728899 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 6275125 |
|---|
| End bp | 6275808 |
|---|
| Gene Length | 684 bp |
|---|
| Protein Length | 227 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | two component transcriptional regulator, LytTR family |
|---|
| Protein accession | YP_003389904 |
|---|
| Protein GI | 284039974 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.983168 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCCTA CTCTCCGTTG CATCGCCATT GACGACGAAC CGATTGCGCT CGATATTATC
AAAGCGCACG CGGGTAAAGT GCCGTTTCTG GACCTGAAAC GAACGTTCGT GAACGCCTTC
GAAGCCCTTA CTTTCCTGAA AACAGAAACG GTTGACCTGA TTTTTCTGGA CATCAATATG
CCCGACCTTA CAGGGCTTGA CTTCGCCCAG GTGGTTGGCA ACAAATCGTT GGTGGTGTTT
ACGACGGCCT ATCCCGAGTA TGCCTTGCAG GGTTTTGAAT TAAGTGCACT GGATTACCTG
CTGAAGCCCA TTGCGTTCGG GCGGTTTATG CAGGCGGCCA ACAAAGCCTA CGAACGTCTG
TCGGGCGATT CAAAAAAGTC ACCCTTCGTT TTTGTGAAAG ACGGCTACGA CTGGGTACGA
ATCAATCTGG ACGAGTTACA GTATGTCGAA TCGGAAGGTA ATTACCTGAC GTTTCAGGAA
ACGGGCAAAA AAGCCCTCAC CCGCATGACC ATCACCGAAG CCATCGACCT GCTCCCCGCC
GACCAATTCA TGCGTGTTCA CAAATCTTAC ATCGTGGCCC TCGACCGCAT CGAGAAAATA
GAGCGGCATC AGCTCACCAT CGGTAAAGCA CAGATTCCCC TGGCTGGCTC GTACCGCGAT
GAGTTGCTGG AGCGGGTGAA GTAA
|
|---|
| Protein sequence | MPPTLRCIAI DDEPIALDII KAHAGKVPFL DLKRTFVNAF EALTFLKTET VDLIFLDINM
PDLTGLDFAQ VVGNKSLVVF TTAYPEYALQ GFELSALDYL LKPIAFGRFM QAANKAYERL
SGDSKKSPFV FVKDGYDWVR INLDELQYVE SEGNYLTFQE TGKKALTRMT ITEAIDLLPA
DQFMRVHKSY IVALDRIEKI ERHQLTIGKA QIPLAGSYRD ELLERVK
|
|---|
| |