| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3280 |
|---|
| Symbol | |
|---|
| ID | 8226858 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 4021154 |
|---|
| End bp | 4021891 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644931112 |
|---|
| Product | two component transcriptional regulator, LytTR family |
|---|
| Protein accession | YP_003087657 |
|---|
| Protein GI | 255037036 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 43 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGTGA CACTGGAATG CATTGCCGTG GACGACGAAC CATTGGCGCT CGGCCTGGTG
TGCGCATTTA TTGAAAAAAC ACCGTTCCTG AACCTCGCAG GCCGTTATTC CAGCGCAGTG
GAGGCTTTGC AGGTGATTAA CAGCAAGCCG ATCGACGTCA TTTTTCTCGA TATTCAAATG
CCCGACCTCA CTGGCATCGA ACTAGCCCGG GTGCTTGAAA AAGCCGGTAA TAAGGCGCCT
AGGATCATTT TTACAACCGC ATTCAATCAA TACGCGCTCG ATGGTTTTCG CGTAGATGCC
ATTGACTATC TCCTAAAACC CTTTAATTAC GAAGAGTTCC TCCGTGCCGC ATCCAAGGCG
CAGGCGTACG TAGAGCTGGT GCAAAAGGCC TCGTCGGCCG GTTCTGCGGA GCCGAAGGAC
GAGTACTTGT TCCTGAAAGT GGAATATCAG CTGGTGCGGA TCGCCTACGA CGACATTTTG
TACACGGAGG GGCTCAAAGA TTATGTAAAA GTCCACCTCA AATCGGACCC GAAGCCTGTG
CTCTCGCTCA CGAGCCTGAA AGCGCTGGAA GAAAAGCTGC CCGCGTCCAA ATTCATGCGG
GTGCATCGGT CGTTCATCGT CAATCTGGAT AAAATCAGCG CGGTCACGCG CAATACCATT
CAGATCGGCG CTATTTCGAT TCCCGTCAGC GACCAGTACA AGGAGGCTTT CAATCAGTTT
TTGAGTAAAT GGATGTAA
|
|---|
| Protein sequence | MSVTLECIAV DDEPLALGLV CAFIEKTPFL NLAGRYSSAV EALQVINSKP IDVIFLDIQM
PDLTGIELAR VLEKAGNKAP RIIFTTAFNQ YALDGFRVDA IDYLLKPFNY EEFLRAASKA
QAYVELVQKA SSAGSAEPKD EYLFLKVEYQ LVRIAYDDIL YTEGLKDYVK VHLKSDPKPV
LSLTSLKALE EKLPASKFMR VHRSFIVNLD KISAVTRNTI QIGAISIPVS DQYKEAFNQF
LSKWM
|
|---|
| |