| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_1631 |
|---|
| Symbol | |
|---|
| ID | 3756628 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | + |
|---|
| Start bp | 1682090 |
|---|
| End bp | 1683775 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637782510 |
|---|
| Product | response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor |
|---|
| Protein accession | YP_388123 |
|---|
| Protein GI | 78356674 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.608678 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCTT CAGATGATTT GCCCGGAGTA TTGATTGTCG AAGACGGCAG GCTTGCCGCT
GCAACTCTGC GTATCCAGCT GGAGTCATTA GGGTATGATG TGCTCGGGGT GTTTGATAAC
GGTGAAGAGG CGGTGCGTTG TGCCCCTGAT CTGCGTCCGG ACATAGCACT GGTGGATATA
ATGCTGTGCG GGGCATTGGA CGGTGTGGAA ACCGCAGCCC GTCTTGCAGC CGGATGCAAT
CTGCCGATCA TTTTCATAAC CAGCAGTCAG GATGTGGAAA CATTCCAGCG GGCCAAGCGG
GTCAATCCGT TCGGTTATCT GGCCAAGCCC GTGGCGGCGG ACACGCTGCA CCGTTCCATA
GAGATGGCCA TTCACAAGAA AAAGCTGGAA CAGCGGCTGC TGGAAAGCGA AGCCCGCTAC
CGCCTGATTG TGGAAAGCCT GAATGACGGA CTGGCCATTC TGGATGCCGG GTACCACATC
CGGTACTGCA ATACCAAGCT GGTGGCCATG CTGCAGAATA CCGGTGCCGT GGCTTTGCAT
GCCCCTTTCA CTTCTTTGCT GCATCCGGGC AGCGTTTCCC GCTTTCTGCT TACCGCACAA
AGCGCAGCGA CAAGCGGATT TGCTTCTTTC GGTGGCAATC TGCAGGCTGT CGACGATGTG
GCTCTGCCTG TCCGGGTGGG GGTATCCTGC CGAAAGGCTG AAGGTAACCG GCAGTCGGAA
TATGTATGCG TTTTGACGGA TGTTTCCGAG TTGGTTGCTT CTGCGGCGGC GCAGCGTGAA
GCCGAAGCAA AGTACCGCAC AATTTTTGAA AACGCCCACG AAGGAATTTT TCAGGCCAGA
GCAGACGGTC GCTTTCTGGA AGTCAATCCA TCCATGGCGG CGCTTTTCGG TTTTCCCGAT
GCGGCAACCA TGCTGCACGA GGTGCCCTCG CTTTGCGCTT TGTTTGCCAC GGGAGCGGAA
CAGGGTGAGC ATTGCCTGCC TTTTCTTGCT TCGCAGGAGT CGGTGCATGG TTTTCAGCTG
CAGCTCATGA CGCGCAAAGG TGACACTGTG TGGGTGGAGC TTAGCTGTCA TACCGTGCTT
GATGCTGCCG GTAACGTAAA CCGGCTGGAA GGCATGATCA TTGACGTGAC CGAGCGGCGC
AAGCACGAAT TGCATCTGCT GCGGCTGGCC ACAAAGGATG ATCTGACCGG CGTGAGCAAC
AGAGCGGCGT TTCGTGATAT GCTGAAAAAA TCTGTCGAAG AGGTGAAAGA AAGCTCCATC
TGTTCGGCGT TACTGTATAT TGACCTTAAT TATTTTAAAA AGGTTAATGA TAAATACGGT
CACTACGTGG GTGATATGGT TCTGCGCGAG GTGGCGGCAA GGCTGAGCAG CAGGGTGCGC
ACGGCCGATG TTATCGGACG TGTGGGCGGT GACGAGTTTT GTGTGCTGCT GCGCGGCGTA
GGCGGGGTGG AACGTGCCGT CAGTCTGGCC GAAGATATGC GCGGAGTGCT GGACAAGCCC
TTTGAAAATT TGCCCGAAGA GCATCGTCTG GGCATGAGCA TAGGCGTGCT GCTGCTACAG
CCGCCCGATG TTGTTGACGC GGGCGAAGCC ATGCGGCGTG CCGATTCGGC CATGTATCAT
GCCAAAACAA CAGGCCGGGG GGTTGTCGTC TGGGAAGAAG GCATGCTGCA GAGCAAGGCG
TGCTGA
|
|---|
| Protein sequence | MTASDDLPGV LIVEDGRLAA ATLRIQLESL GYDVLGVFDN GEEAVRCAPD LRPDIALVDI
MLCGALDGVE TAARLAAGCN LPIIFITSSQ DVETFQRAKR VNPFGYLAKP VAADTLHRSI
EMAIHKKKLE QRLLESEARY RLIVESLNDG LAILDAGYHI RYCNTKLVAM LQNTGAVALH
APFTSLLHPG SVSRFLLTAQ SAATSGFASF GGNLQAVDDV ALPVRVGVSC RKAEGNRQSE
YVCVLTDVSE LVASAAAQRE AEAKYRTIFE NAHEGIFQAR ADGRFLEVNP SMAALFGFPD
AATMLHEVPS LCALFATGAE QGEHCLPFLA SQESVHGFQL QLMTRKGDTV WVELSCHTVL
DAAGNVNRLE GMIIDVTERR KHELHLLRLA TKDDLTGVSN RAAFRDMLKK SVEEVKESSI
CSALLYIDLN YFKKVNDKYG HYVGDMVLRE VAARLSSRVR TADVIGRVGG DEFCVLLRGV
GGVERAVSLA EDMRGVLDKP FENLPEEHRL GMSIGVLLLQ PPDVVDAGEA MRRADSAMYH
AKTTGRGVVV WEEGMLQSKA C
|
|---|
| |