More than 300 homologs were found in PanDaTox collection
for query gene Suden_1012 on replicon NC_007575
Organism: Sulfurimonas denitrificans DSM 1251



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007575  Suden_1012  response regulator receiver domain-containing protein  100 
 
 
109 aa  216  6e-56  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_011832  Mpal_0048  putative PAS/PAC sensor protein  42.86 
 
 
255 aa  90.1  8e-18  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_011661  Dtur_1110  response regulator receiver and ANTAR domain protein  44.34 
 
 
197 aa  87.4  6e-17  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0520878  n/a   
 
 
-
 
NC_009712  Mboo_1813  response regulator receiver protein  38.1 
 
 
316 aa  85.5  2e-16  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.445517  normal  0.445863 
 
 
-
 
NC_009712  Mboo_1808  putative PAS/PAC sensor protein  41.9 
 
 
603 aa  84.7  4e-16  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.268482 
 
 
-
 
NC_010623  Bphy_4529  multi-sensor hybrid histidine kinase  32.73 
 
 
989 aa  84  6e-16  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_2639  multi-sensor hybrid histidine kinase  40 
 
 
817 aa  84  6e-16  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_2709  two component signal transduction response regulator  40 
 
 
429 aa  83.6  8e-16  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_1807  putative PAS/PAC sensor protein  36.19 
 
 
258 aa  83.6  9e-16  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.254511 
 
 
-
 
NC_010551  BamMC406_1235  multi-sensor hybrid histidine kinase  33.03 
 
 
989 aa  83.6  9e-16  Burkholderia ambifaria MC40-6  Bacteria  normal  0.172784  normal 
 
 
-
 
NC_013132  Cpin_0268  sigma54 specific transcriptional regulator, Fis family  36.19 
 
 
651 aa  81.6  0.000000000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007355  Mbar_A3448  putative transcriptional regulator  38.1 
 
 
143 aa  80.5  0.000000000000006  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.132297  normal  0.0606491 
 
 
-
 
NC_009636  Smed_2347  two-component response regulator  36.89 
 
 
264 aa  80.5  0.000000000000006  Sinorhizobium medicae WSM419  Bacteria  normal  0.177509  normal 
 
 
-
 
NC_013730  Slin_3427  two component transcriptional regulator, LytTR family  34.95 
 
 
256 aa  80.5  0.000000000000006  Spirosoma linguale DSM 74  Bacteria  normal  0.239231  normal 
 
 
-
 
NC_011369  Rleg2_3026  two-component response regulator  36.89 
 
 
264 aa  80.1  0.000000000000009  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.246349  normal 
 
 
-
 
NC_011831  Cagg_1360  putative PAS/PAC sensor protein  40 
 
 
429 aa  80.1  0.00000000000001  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00110028  hitchhiker  0.000665614 
 
 
-
 
NC_012850  Rleg_3278  two-component response regulator  36.89 
 
 
264 aa  80.1  0.00000000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.442682  hitchhiker  0.00956717 
 
 
-
 
NC_011729  PCC7424_1114  response regulator receiver sensor signal transduction histidine kinase  37.14 
 
 
373 aa  79.7  0.00000000000001  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007413  Ava_0066  response regulator receiver sensor signal transduction histidine kinase  39.25 
 
 
377 aa  79  0.00000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.359193  normal  0.0132857 
 
 
-
 
NC_007796  Mhun_2637  putative PAS/PAC sensor protein  36.19 
 
 
461 aa  79.3  0.00000000000002  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_007955  Mbur_2285  response regulator receiver  36.79 
 
 
130 aa  79.3  0.00000000000002  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000158247  n/a   
 
 
-
 
NC_014230  CA2559_05930  DNA-binding response regulator, LuxR family protein  39.05 
 
 
207 aa  79  0.00000000000002  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_011832  Mpal_1773  response regulator receiver sensor signal transduction histidine kinase  38.46 
 
 
386 aa  79  0.00000000000002  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_007796  Mhun_2645  putative PAS/PAC sensor protein  33.96 
 
 
336 aa  78.2  0.00000000000003  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_008254  Meso_3109  two-component response regulator  34.95 
 
 
265 aa  77.8  0.00000000000004  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_2035  response regulator receiver/ANTAR domain-containing protein  38.1 
 
 
199 aa  78.2  0.00000000000004  Frankia sp. EAN1pec  Bacteria  normal  normal  0.480822 
 
 
-
 
NC_009483  Gura_2117  putative PAS/PAC sensor protein  37.38 
 
 
257 aa  77.8  0.00000000000004  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007796  Mhun_1724  response regulator receiver domain-containing protein  32.38 
 
 
352 aa  77.4  0.00000000000005  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_007796  Mhun_0455  response regulator receiver domain-containing protein  32.08 
 
 
238 aa  77.4  0.00000000000006  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.21261 
 
 
-
 
NC_013730  Slin_3671  Sigma 54 interacting domain protein  34.29 
 
 
657 aa  77.4  0.00000000000006  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_1528  response regulator receiver protein  37.38 
 
 
450 aa  77.4  0.00000000000006  Candidatus Methanoregula boonei 6A8  Archaea  hitchhiker  0.00374994  normal  0.77554 
 
 
-
 
NC_008686  Pden_2822  two-component response regulator  38.68 
 
 
267 aa  77  0.00000000000007  Paracoccus denitrificans PD1222  Bacteria  normal  0.230061  normal 
 
 
-
 
NC_009049  Rsph17029_2932  two-component response regulator  37.74 
 
 
269 aa  77  0.00000000000009  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_2703  two-component response regulator  37.74 
 
 
269 aa  77  0.00000000000009  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_1488  response regulator receiver protein  34.58 
 
 
450 aa  76.3  0.0000000000001  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.379239 
 
 
-
 
NC_009667  Oant_1246  two-component response regulator  35.92 
 
 
264 aa  76.6  0.0000000000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.660623  n/a   
 
 
-
 
NC_007493  RSP_1274  two-component response regulator  36.79 
 
 
269 aa  76.3  0.0000000000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_1517  response regulator receiver protein  35.24 
 
 
127 aa  76.3  0.0000000000001  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.394491  normal  0.160821 
 
 
-
 
NC_009972  Haur_0985  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  34.62 
 
 
704 aa  76.3  0.0000000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  decreased coverage  0.000494124  n/a   
 
 
-
 
NC_008726  Mvan_2840  response regulator receiver/ANTAR domain-containing protein  34.62 
 
 
213 aa  76.6  0.0000000000001  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0401204  normal 
 
 
-
 
NC_009712  Mboo_1497  putative PAS/PAC sensor protein  36.19 
 
 
380 aa  75.5  0.0000000000002  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.506851  normal  0.137069 
 
 
-
 
NC_011884  Cyan7425_2337  signal transduction histidine kinase  35.58 
 
 
352 aa  75.5  0.0000000000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_1630  two component transcriptional regulator, LytTR family  39.25 
 
 
243 aa  75.1  0.0000000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.192215 
 
 
-
 
NC_007643  Rru_A3285  two-component response regulator  33.98 
 
 
265 aa  75.1  0.0000000000003  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008783  BARBAKC583_0250  two-component response regulator  33.65 
 
 
264 aa  75.1  0.0000000000003  Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_3575  response regulator receiver/ANTAR domain-containing protein  33.65 
 
 
229 aa  75.1  0.0000000000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.10936  normal  0.0183031 
 
 
-
 
NC_004310  BR1657  two-component response regulator  35.58 
 
 
264 aa  74.7  0.0000000000004  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_3178  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  30.19 
 
 
426 aa  74.7  0.0000000000004  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_1618  response regulator receiver/ANTAR domain-containing protein  38.1 
 
 
199 aa  74.7  0.0000000000004  Frankia sp. CcI3  Bacteria  normal  0.144201  normal  0.292856 
 
 
-
 
NC_007955  Mbur_1557  response regulator receiver  37.14 
 
 
131 aa  74.7  0.0000000000004  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000000412225  n/a   
 
 
-
 
NC_008609  Ppro_3008  multi-sensor hybrid histidine kinase  36.19 
 
 
953 aa  74.7  0.0000000000004  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_1604  two-component response regulator  35.58 
 
 
264 aa  74.7  0.0000000000004  Brucella ovis ATCC 25840  Bacteria  normal  0.476211  n/a   
 
 
-
 
NC_009511  Swit_3925  two-component response regulator  37.38 
 
 
264 aa  74.3  0.0000000000005  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_1242  multi-sensor signal transduction histidine kinase  38.1 
 
 
472 aa  74.3  0.0000000000005  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.41521  normal 
 
 
-
 
NC_009565  TBFG_11642  two component system transcriptional regulator  33.65 
 
 
205 aa  74.3  0.0000000000005  Mycobacterium tuberculosis F11  Bacteria  normal  0.0378541  normal  0.634495 
 
 
-
 
NC_009712  Mboo_0900  response regulator receiver protein  36.19 
 
 
126 aa  74.3  0.0000000000005  Candidatus Methanoregula boonei 6A8  Archaea  normal  hitchhiker  0.000110071 
 
 
-
 
NC_009664  Krad_2958  response regulator receiver and ANTAR domain protein  36.54 
 
 
229 aa  73.9  0.0000000000006  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.799557  normal  0.502809 
 
 
-
 
NC_007575  Suden_0616  two component transcriptional regulator  35.24 
 
 
249 aa  73.9  0.0000000000006  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_0841  response regulator receiver  35.85 
 
 
135 aa  73.9  0.0000000000006  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_013132  Cpin_0115  two component, sigma54 specific, transcriptional regulator, Fis family  35.24 
 
 
481 aa  73.9  0.0000000000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_25990  response regulator with putative antiterminator output domain protein  37.5 
 
 
204 aa  74.3  0.0000000000006  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_4327  transcriptional regulator, NifA subfamily, Fis Family  36.79 
 
 
875 aa  73.9  0.0000000000007  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.184763 
 
 
-
 
NC_011988  Avi_6000  two-component response regulator  35.92 
 
 
264 aa  73.9  0.0000000000007  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_2407  response regulator receiver protein  34.31 
 
 
182 aa  73.9  0.0000000000007  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_011726  PCC8801_0428  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  40 
 
 
455 aa  73.6  0.0000000000009  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011769  DvMF_2677  response regulator receiver sensor hybrid histidine kinase  32.69 
 
 
636 aa  73.2  0.000000000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.068934 
 
 
-
 
NC_011884  Cyan7425_4302  signal transduction histidine kinase  35.58 
 
 
343 aa  73.2  0.000000000001  Cyanothece sp. PCC 7425  Bacteria  normal  0.219335  normal  0.321802 
 
 
-
 
NC_014158  Tpau_2483  response regulator receiver and ANTAR domain protein  34.62 
 
 
205 aa  73.2  0.000000000001  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_0439  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  40 
 
 
455 aa  73.2  0.000000000001  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.444664 
 
 
-
 
NC_011894  Mnod_4399  two-component response regulator  34.91 
 
 
267 aa  72.8  0.000000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.042433  n/a   
 
 
-
 
NC_010511  M446_2725  two-component response regulator  34.91 
 
 
267 aa  72.8  0.000000000001  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.127392 
 
 
-
 
NC_007908  Rfer_0895  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  32.38 
 
 
701 aa  72.4  0.000000000002  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_3511  response regulator receiver sensor signal transduction histidine kinase  31.73 
 
 
384 aa  72.8  0.000000000002  Polaromonas sp. JS666  Bacteria  normal  normal  0.253652 
 
 
-
 
NC_007778  RPB_1388  two-component response regulator  36.79 
 
 
268 aa  71.6  0.000000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.740256  normal 
 
 
-
 
NC_013510  Tcur_2860  response regulator receiver and ANTAR domain protein  36.79 
 
 
214 aa  72  0.000000000003  Thermomonospora curvata DSM 43183  Bacteria  normal  0.153721  n/a   
 
 
-
 
NC_008146  Mmcs_3021  response regulator receiver/ANTAR domain-containing protein  32.69 
 
 
210 aa  72  0.000000000003  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_3896  two component transcriptional regulator, LytTR family  34.62 
 
 
245 aa  72  0.000000000003  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.356034 
 
 
-
 
NC_008705  Mkms_3067  response regulator receiver/ANTAR domain-containing protein  32.69 
 
 
210 aa  72  0.000000000003  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3036  response regulator receiver/ANTAR domain-containing protein  32.69 
 
 
210 aa  72  0.000000000003  Mycobacterium sp. JLS  Bacteria  normal  0.222389  normal  0.216241 
 
 
-
 
NC_014210  Ndas_3159  response regulator receiver and ANTAR domain protein  38.89 
 
 
212 aa  71.6  0.000000000004  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_007796  Mhun_3039  response regulator receiver sensor signal transduction histidine kinase  31.78 
 
 
355 aa  71.2  0.000000000004  Methanospirillum hungatei JF-1  Archaea  normal  0.610599  normal 
 
 
-
 
NC_007925  RPC_4028  two-component response regulator  36.79 
 
 
268 aa  71.6  0.000000000004  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.215518 
 
 
-
 
NC_007333  Tfu_1181  response regulator receiver  39.81 
 
 
207 aa  71.2  0.000000000005  Thermobifida fusca YX  Bacteria  normal  0.928438  n/a   
 
 
-
 
NC_007406  Nwi_2771  two-component response regulator  34.91 
 
 
268 aa  70.9  0.000000000006  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.724162 
 
 
-
 
NC_013037  Dfer_5460  sigma54 specific transcriptional regulator, Fis family  37.14 
 
 
650 aa  70.9  0.000000000006  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.665291  normal  0.225769 
 
 
-
 
NC_009953  Sare_3378  response regulator receiver/ANTAR domain-containing protein  35.85 
 
 
206 aa  70.5  0.000000000006  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0248143 
 
 
-
 
NC_011004  Rpal_4704  two-component response regulator  35.85 
 
 
268 aa  70.9  0.000000000006  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.868333  n/a   
 
 
-
 
NC_009636  Smed_0337  two-component response regulator  34.95 
 
 
265 aa  70.9  0.000000000006  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.101907 
 
 
-
 
NC_007958  RPD_1368  two-component response regulator  36.79 
 
 
268 aa  70.9  0.000000000006  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_1358  putative PAS/PAC sensor protein  36.11 
 
 
404 aa  70.5  0.000000000007  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.873442  normal  0.0258422 
 
 
-
 
NC_011729  PCC7424_4564  response regulator receiver sensor signal transduction histidine kinase  36.19 
 
 
376 aa  70.5  0.000000000007  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.531352 
 
 
-
 
NC_013132  Cpin_1348  two component, sigma54 specific, transcriptional regulator, Fis family  33.33 
 
 
461 aa  70.5  0.000000000008  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_1689  response regulator receiver and ANTAR domain protein  37.5 
 
 
201 aa  70.5  0.000000000008  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000385738 
 
 
-
 
NC_007908  Rfer_0893  response regulator receiver sensor signal transduction histidine kinase  32.38 
 
 
359 aa  70.5  0.000000000008  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_7001  two-component response regulator  35.85 
 
 
254 aa  70.1  0.000000000008  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.746604 
 
 
-
 
NC_008048  Sala_0287  two-component response regulator  33.64 
 
 
264 aa  70.5  0.000000000008  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.162207  normal  0.615861 
 
 
-
 
NC_007794  Saro_0488  two-component response regulator  33.33 
 
 
265 aa  70.1  0.000000000009  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_1694  response regulator receiver/ANTAR domain-containing protein  37.5 
 
 
201 aa  70.1  0.000000000009  Arthrobacter sp. FB24  Bacteria  normal  0.136848  n/a   
 
 
-
 
NC_013235  Namu_3061  response regulator receiver and ANTAR domain protein  34.95 
 
 
194 aa  69.7  0.00000000001  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00113676  hitchhiker  0.000689676 
 
 
-
 
NC_008751  Dvul_0434  putative PAS/PAC sensor protein  31.13 
 
 
458 aa  69.7  0.00000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>