| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1630 |
|---|
| Symbol | |
|---|
| ID | 8225201 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 1977085 |
|---|
| End bp | 1977816 |
|---|
| Gene Length | 732 bp |
|---|
| Protein Length | 243 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644929485 |
|---|
| Product | two component transcriptional regulator, LytTR family |
|---|
| Protein accession | YP_003086037 |
|---|
| Protein GI | 255035416 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.192215 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCCGT TACGAATACT GATTGTTGAG GATATCGTCC TGACCGCCCT GGACCTGAGA
AATTCACTTG AAAAAAACGG CTACGTCGTC ACCGCGATCG CCCGGAATAT GGAGGAGGTG
CGACAGGCCG TGGTGCAAAC GCTCCCGGAC CTCGCGCTGA TCGACATCAT CCTGGAAGGC
TCGGATGCGT CGGGGATCGA AATCGCCCAG TATTTGACCG AATTGCGGCC CATTCCCATC
ATTTACCTTA CCGCGAATTC CGAAGAGGAG CAGTTCAGGA AAGCACAGCT GACCCGTCCG
GCAGCCTATC TTTTGAAGCC ATTCAGGATC AGCGATGTGA TTTTCAATGT CGAATTGGCT
TATCACAATT TCAAAGCGGC GGATCACGAT CCGGAGCGGC ACCTGATGCT GCCGACCAAT
GGCGGACTGG AACTCGTGGA CCTCGATGAG GTGGCCTATC TGAAAGCCGC CGGCGCTTAT
ACGGAGGTGG TTTTGGCCGA TGGCACTACG TATCTCGTCA GTTCCGGCCT CGGGCAAACC
GGGCTGTATT TCCGTGGAGC CAATTTTTTC CGGCTCTCGC GCTCGTTTGT GGTCAATATC
CAGTACATCA AGCGCGTGAA GGAAGGCGAA CTTCTGCTGC GTGACGGCAT TACGAAAATT
TCCCTGCCCG ACGGCGCCCG CAAGGAGCTG CTGAATAAGT TTACGATTTT GAAAACGAAA
CAGCCGAAGT AA
|
|---|
| Protein sequence | MPPLRILIVE DIVLTALDLR NSLEKNGYVV TAIARNMEEV RQAVVQTLPD LALIDIILEG
SDASGIEIAQ YLTELRPIPI IYLTANSEEE QFRKAQLTRP AAYLLKPFRI SDVIFNVELA
YHNFKAADHD PERHLMLPTN GGLELVDLDE VAYLKAAGAY TEVVLADGTT YLVSSGLGQT
GLYFRGANFF RLSRSFVVNI QYIKRVKEGE LLLRDGITKI SLPDGARKEL LNKFTILKTK
QPK
|
|---|
| |