More than 300 homologs were found in PanDaTox collection
for query gene Dfer_1630 on replicon NC_013037
Organism: Dyadobacter fermentans DSM 18053



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013037  Dfer_1630  two component transcriptional regulator, LytTR family  100 
 
 
243 aa  489  1e-137  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.192215 
 
 
-
 
NC_013730  Slin_3427  two component transcriptional regulator, LytTR family  30.56 
 
 
256 aa  108  6e-23  Spirosoma linguale DSM 74  Bacteria  normal  0.239231  normal 
 
 
-
 
NC_013037  Dfer_5460  sigma54 specific transcriptional regulator, Fis family  36.55 
 
 
650 aa  106  3e-22  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.665291  normal  0.225769 
 
 
-
 
NC_014230  CA2559_08681  transcriptional regulator  29.82 
 
 
240 aa  97.8  1e-19  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.803849  n/a   
 
 
-
 
NC_007955  Mbur_0841  response regulator receiver  40.98 
 
 
135 aa  93.6  2e-18  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_013132  Cpin_5058  two component transcriptional regulator, LytTR family  28.51 
 
 
247 aa  92.8  4e-18  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.0000256301  normal  0.0140106 
 
 
-
 
NC_007955  Mbur_2285  response regulator receiver  39.2 
 
 
130 aa  91.7  1e-17  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000158247  n/a   
 
 
-
 
NC_007355  Mbar_A3448  putative transcriptional regulator  39.2 
 
 
143 aa  90.9  2e-17  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.132297  normal  0.0606491 
 
 
-
 
NC_011769  DvMF_1460  putative PAS/PAC sensor protein  36.84 
 
 
474 aa  90.1  3e-17  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.81808 
 
 
-
 
NC_013132  Cpin_2085  putative two component, sigma54 specific, transcriptional regulator, Fis family  43.1 
 
 
457 aa  88.2  1e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4307  sigma54 specific transcriptional regulator, Fis family  42.24 
 
 
635 aa  88.2  1e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.056389 
 
 
-
 
NC_011832  Mpal_0048  putative PAS/PAC sensor protein  40.98 
 
 
255 aa  87  2e-16  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_013037  Dfer_5458  putative two component, sigma54 specific, transcriptional regulator, Fis family  41.38 
 
 
582 aa  87.8  2e-16  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.336827 
 
 
-
 
NC_011884  Cyan7425_2337  signal transduction histidine kinase  42.97 
 
 
352 aa  87.4  2e-16  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_1007  putative GAF sensor protein  37.19 
 
 
311 aa  87  3e-16  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.164021  normal  0.860345 
 
 
-
 
NC_009712  Mboo_1311  putative PAS/PAC sensor protein  39.2 
 
 
340 aa  86.3  5e-16  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.187179 
 
 
-
 
NC_007796  Mhun_1724  response regulator receiver domain-containing protein  36.36 
 
 
352 aa  85.5  7e-16  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_007796  Mhun_2637  putative PAS/PAC sensor protein  38.02 
 
 
461 aa  85.5  7e-16  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_013730  Slin_3896  two component transcriptional regulator, LytTR family  30.49 
 
 
245 aa  85.5  7e-16  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.356034 
 
 
-
 
NC_013161  Cyan8802_0439  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  43.09 
 
 
455 aa  85.1  8e-16  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.444664 
 
 
-
 
NC_007498  Pcar_2709  two component signal transduction response regulator  36.97 
 
 
429 aa  85.1  0.000000000000001  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_0428  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  42.28 
 
 
455 aa  84.3  0.000000000000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011831  Cagg_1360  putative PAS/PAC sensor protein  38.81 
 
 
429 aa  84.3  0.000000000000001  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00110028  hitchhiker  0.000665614 
 
 
-
 
NC_007948  Bpro_3511  response regulator receiver sensor signal transduction histidine kinase  32.68 
 
 
384 aa  85.1  0.000000000000001  Polaromonas sp. JS666  Bacteria  normal  normal  0.253652 
 
 
-
 
NC_013132  Cpin_4853  two component, sigma54 specific, transcriptional regulator, Fis family  36.59 
 
 
457 aa  84.7  0.000000000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.231814  hitchhiker  0.00735887 
 
 
-
 
NC_013173  Dbac_0866  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  39.2 
 
 
701 aa  84.3  0.000000000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.711392  n/a   
 
 
-
 
NC_013132  Cpin_0115  two component, sigma54 specific, transcriptional regulator, Fis family  33.81 
 
 
481 aa  84.7  0.000000000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_1725  multi-sensor signal transduction histidine kinase  36 
 
 
499 aa  84  0.000000000000002  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_1557  response regulator receiver  39.34 
 
 
131 aa  84  0.000000000000002  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000000412225  n/a   
 
 
-
 
NC_007413  Ava_3003  PAS/PAC sensor hybrid histidine kinase  35 
 
 
498 aa  83.6  0.000000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007796  Mhun_0455  response regulator receiver domain-containing protein  35.61 
 
 
238 aa  83.2  0.000000000000004  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.21261 
 
 
-
 
NC_013730  Slin_4327  transcriptional regulator, NifA subfamily, Fis Family  38.21 
 
 
875 aa  82.4  0.000000000000005  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.184763 
 
 
-
 
NC_013132  Cpin_4365  two component, sigma54 specific, transcriptional regulator, Fis family  35.29 
 
 
471 aa  82.4  0.000000000000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.231326 
 
 
-
 
NC_010623  Bphy_4529  multi-sensor hybrid histidine kinase  38.57 
 
 
989 aa  82  0.000000000000007  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_4302  signal transduction histidine kinase  35.94 
 
 
343 aa  82  0.000000000000007  Cyanothece sp. PCC 7425  Bacteria  normal  0.219335  normal  0.321802 
 
 
-
 
NC_013132  Cpin_0268  sigma54 specific transcriptional regulator, Fis family  36.44 
 
 
651 aa  82.4  0.000000000000007  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_2117  putative PAS/PAC sensor protein  37.5 
 
 
257 aa  82  0.000000000000008  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_1235  multi-sensor hybrid histidine kinase  38.57 
 
 
989 aa  82  0.000000000000008  Burkholderia ambifaria MC40-6  Bacteria  normal  0.172784  normal 
 
 
-
 
NC_008751  Dvul_2282  histidine kinase  36.51 
 
 
667 aa  80.5  0.00000000000002  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_1730  multi-sensor signal transduction histidine kinase  37.9 
 
 
591 aa  80.1  0.00000000000003  Geobacter uraniireducens Rf4  Bacteria  normal  0.319599  n/a   
 
 
-
 
NC_007796  Mhun_2645  putative PAS/PAC sensor protein  38.89 
 
 
336 aa  79.7  0.00000000000004  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_011729  PCC7424_4564  response regulator receiver sensor signal transduction histidine kinase  36.51 
 
 
376 aa  79.7  0.00000000000004  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.531352 
 
 
-
 
NC_013132  Cpin_1348  two component, sigma54 specific, transcriptional regulator, Fis family  40.52 
 
 
461 aa  79.3  0.00000000000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0434  putative PAS/PAC sensor protein  35 
 
 
458 aa  79.3  0.00000000000005  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_0985  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  36 
 
 
704 aa  79.3  0.00000000000005  Herpetosiphon aurantiacus ATCC 23779  Bacteria  decreased coverage  0.000494124  n/a   
 
 
-
 
NC_009712  Mboo_2032  response regulator receiver protein  34.07 
 
 
387 aa  78.6  0.00000000000009  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.0686114 
 
 
-
 
NC_007413  Ava_0066  response regulator receiver sensor signal transduction histidine kinase  39.2 
 
 
377 aa  78.2  0.0000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.359193  normal  0.0132857 
 
 
-
 
NC_008609  Ppro_3008  multi-sensor hybrid histidine kinase  36.36 
 
 
953 aa  78.2  0.0000000000001  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_1807  putative PAS/PAC sensor protein  35.94 
 
 
258 aa  77.8  0.0000000000002  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.254511 
 
 
-
 
NC_009712  Mboo_2407  response regulator receiver protein  37.9 
 
 
182 aa  76.6  0.0000000000003  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_007796  Mhun_0118  putative PAS/PAC sensor protein  35.25 
 
 
265 aa  76.6  0.0000000000003  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_013730  Slin_3671  Sigma 54 interacting domain protein  39.67 
 
 
657 aa  76.6  0.0000000000003  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_1912  response regulator receiver protein  35.54 
 
 
263 aa  75.9  0.0000000000005  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.181503  normal  0.732361 
 
 
-
 
NC_007948  Bpro_3510  PAS/PAC sensor hybrid histidine kinase  35.9 
 
 
521 aa  75.5  0.0000000000007  Polaromonas sp. JS666  Bacteria  normal  normal  0.269968 
 
 
-
 
NC_011884  Cyan7425_3178  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  33.06 
 
 
426 aa  74.7  0.000000000001  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_1631  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  37.5 
 
 
561 aa  74.7  0.000000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.608678  n/a   
 
 
-
 
NC_007575  Suden_1012  response regulator receiver domain-containing protein  39.25 
 
 
109 aa  75.1  0.000000000001  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_4326  PAS/PAC sensor hybrid histidine kinase  36.07 
 
 
571 aa  74.3  0.000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_2677  response regulator receiver sensor hybrid histidine kinase  34.71 
 
 
636 aa  73.6  0.000000000003  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.068934 
 
 
-
 
NC_009712  Mboo_1813  response regulator receiver protein  36 
 
 
316 aa  73.6  0.000000000003  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.445517  normal  0.445863 
 
 
-
 
NC_013757  Gobs_3208  response regulator receiver and ANTAR domain protein  35.25 
 
 
200 aa  73.2  0.000000000003  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3669  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  35.2 
 
 
432 aa  73.6  0.000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011832  Mpal_0573  response regulator receiver protein  30.99 
 
 
261 aa  73.6  0.000000000003  Methanosphaerula palustris E1-9c  Archaea  normal  0.666159  normal  0.332219 
 
 
-
 
NC_007955  Mbur_2294  response regulator receiver  36.11 
 
 
134 aa  72  0.000000000008  Methanococcoides burtonii DSM 6242  Archaea  normal  0.371138  n/a   
 
 
-
 
NC_009441  Fjoh_1441  LytTR family two component transcriptional regulator  22.8 
 
 
248 aa  72  0.000000000009  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_1808  putative PAS/PAC sensor protein  32.24 
 
 
603 aa  71.6  0.00000000001  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.268482 
 
 
-
 
NC_009565  TBFG_11642  two component system transcriptional regulator  35.77 
 
 
205 aa  71.6  0.00000000001  Mycobacterium tuberculosis F11  Bacteria  normal  0.0378541  normal  0.634495 
 
 
-
 
NC_009712  Mboo_2336  response regulator receiver protein  38.4 
 
 
355 aa  70.5  0.00000000002  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.404573  normal  0.642469 
 
 
-
 
NC_011138  MADE_01100  sensory box/GGDEF family protein  33.91 
 
 
798 aa  70.9  0.00000000002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_014230  CA2559_05930  DNA-binding response regulator, LuxR family protein  35.54 
 
 
207 aa  70.5  0.00000000002  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_0616  two component transcriptional regulator  34.92 
 
 
249 aa  70.9  0.00000000002  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_1358  putative PAS/PAC sensor protein  40.74 
 
 
404 aa  70.5  0.00000000002  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.873442  normal  0.0258422 
 
 
-
 
NC_007796  Mhun_2686  putative PAS/PAC sensor protein  41.35 
 
 
337 aa  70.9  0.00000000002  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.209027 
 
 
-
 
NC_013132  Cpin_2207  sigma54 specific transcriptional regulator, Fis family  35.54 
 
 
653 aa  70.9  0.00000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  hitchhiker  0.000576072 
 
 
-
 
NC_009712  Mboo_0913  response regulator receiver protein  36.97 
 
 
124 aa  70.9  0.00000000002  Candidatus Methanoregula boonei 6A8  Archaea  normal  hitchhiker  0.0000000115879 
 
 
-
 
NC_008554  Sfum_2639  multi-sensor hybrid histidine kinase  37.3 
 
 
817 aa  70.9  0.00000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_1110  response regulator receiver and ANTAR domain protein  36.8 
 
 
197 aa  70.9  0.00000000002  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0520878  n/a   
 
 
-
 
NC_007796  Mhun_3039  response regulator receiver sensor signal transduction histidine kinase  35.34 
 
 
355 aa  70.1  0.00000000003  Methanospirillum hungatei JF-1  Archaea  normal  0.610599  normal 
 
 
-
 
NC_011729  PCC7424_1114  response regulator receiver sensor signal transduction histidine kinase  38.33 
 
 
373 aa  70.1  0.00000000003  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007777  Francci3_1618  response regulator receiver/ANTAR domain-containing protein  34.43 
 
 
199 aa  69.7  0.00000000004  Frankia sp. CcI3  Bacteria  normal  0.144201  normal  0.292856 
 
 
-
 
NC_008146  Mmcs_3021  response regulator receiver/ANTAR domain-containing protein  34.43 
 
 
210 aa  69.7  0.00000000004  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_1242  multi-sensor signal transduction histidine kinase  37.04 
 
 
472 aa  69.7  0.00000000004  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.41521  normal 
 
 
-
 
NC_008705  Mkms_3067  response regulator receiver/ANTAR domain-containing protein  34.43 
 
 
210 aa  69.7  0.00000000004  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_2840  response regulator receiver/ANTAR domain-containing protein  35.25 
 
 
213 aa  69.7  0.00000000004  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0401204  normal 
 
 
-
 
NC_013159  Svir_25990  response regulator with putative antiterminator output domain protein  36.59 
 
 
204 aa  69.7  0.00000000004  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3036  response regulator receiver/ANTAR domain-containing protein  34.43 
 
 
210 aa  69.7  0.00000000004  Mycobacterium sp. JLS  Bacteria  normal  0.222389  normal  0.216241 
 
 
-
 
NC_009712  Mboo_1488  response regulator receiver protein  26.32 
 
 
450 aa  69.3  0.00000000005  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.379239 
 
 
-
 
NC_009338  Mflv_3575  response regulator receiver/ANTAR domain-containing protein  35.25 
 
 
229 aa  68.9  0.00000000008  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.10936  normal  0.0183031 
 
 
-
 
NC_007519  Dde_3002  putative PAS/PAC sensor protein  34.59 
 
 
469 aa  68.6  0.00000000009  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.345319  n/a   
 
 
-
 
NC_013510  Tcur_2860  response regulator receiver and ANTAR domain protein  33.88 
 
 
214 aa  68.6  0.00000000009  Thermomonospora curvata DSM 43183  Bacteria  normal  0.153721  n/a   
 
 
-
 
NC_009767  Rcas_3118  response regulator receiver/ANTAR domain-containing protein  35.2 
 
 
196 aa  68.2  0.0000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_2035  response regulator receiver/ANTAR domain-containing protein  33.61 
 
 
199 aa  68.6  0.0000000001  Frankia sp. EAN1pec  Bacteria  normal  normal  0.480822 
 
 
-
 
NC_009712  Mboo_1497  putative PAS/PAC sensor protein  35.57 
 
 
380 aa  68.2  0.0000000001  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.506851  normal  0.137069 
 
 
-
 
NC_013132  Cpin_5950  two component transcriptional regulator, LytTR family  26.09 
 
 
253 aa  68.2  0.0000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.792388  normal  0.0587504 
 
 
-
 
NC_011832  Mpal_1773  response regulator receiver sensor signal transduction histidine kinase  31.52 
 
 
386 aa  67  0.0000000002  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_007778  RPB_0781  two component transcriptional regulator  37.93 
 
 
233 aa  66.6  0.0000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.174075 
 
 
-
 
NC_009972  Haur_4203  response regulator receiver/ANTAR domain-containing protein  35.2 
 
 
195 aa  67  0.0000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.793788  n/a   
 
 
-
 
NC_007908  Rfer_0895  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  31.36 
 
 
701 aa  66.6  0.0000000004  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_1528  response regulator receiver protein  30.6 
 
 
450 aa  66.2  0.0000000004  Candidatus Methanoregula boonei 6A8  Archaea  hitchhiker  0.00374994  normal  0.77554 
 
 
-
 
NC_013037  Dfer_1279  two component transcriptional regulator, LytTR family  25.55 
 
 
248 aa  66.2  0.0000000004  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.111911  normal  0.254446 
 
 
-
 
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