Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_2207 |
Symbol | |
ID | 8358359 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 2726540 |
End bp | 2728501 |
Gene Length | 1962 bp |
Protein Length | 653 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644964391 |
Product | sigma54 specific transcriptional regulator, Fis family |
Protein accession | YP_003121900 |
Protein GI | 256421247 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.000576072 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACCATGA AGGAAAATAT ACTGATCGTC GAAGATGAAT TTATCGTAGG CAATGATCTC AGATTGATGC TGATCAGGGC AGGATACGCC GTTTGTGGCA TCGCTGCTTC CGTGGATGAG GCCAAAGCCA TGATAGAGCG GAATAAACCG AGTTGGGTAT TGCTGGATAT CTTTCTGCTG GATGGATCAT TAGGAACTGA TCTGGCTGGA TATCTCCGCC AGAAAAATAT CGGCTTTATA TACATCTCTG CAAATACGAA TCAAAGTATA CTGGAAATTG CGCGTGCTAC CAGGCCATAC GGCTTCCTGG TGAAACCTTT CCGGGAAAAG GACCTGCTCA TCATGCTGGA TATCGCCAGA TACAAACACC AGAATAACTT GCAGATGGCA CTGCAACGGG AGCAGTTAAT GCAAAAACAA TTGCAGCAGA TCATTGAGGC GCCCTTTGAA CTGGCTGATA AGATTGCCCG TATCCCTGAT GTTTTACAGA CATTTGTCCC GTTTGACTAT CTCCATATTG CCATCACCGG TAAAAGACCG CATACGCTGG AAGATCTGAG TTTCCAGCGG ACAGGCTTCG ATGAGTATGA ACACCTGGAC AATACCGCAC TGTGTAAGTC TTTGGGGCTG GAAAGAAATA CTATCCTTAC CGGAAGAATT GCACAACTGG AAAATGAAAC AGGCGGGTAT CTGAGTGATG CTGAATTCAG GCAATGGATA GCTGACAAAA TATGGGAAAG TAAACTAAGT GATCATCTCC GTCTAAACGC CAGACTGGCT ATTGCTGTTA CGCTGCCGGC CGGTAATCTG GCCGTCATTT CTTTTTACAG CCGTAATGCC GACACGTATA CGGAAGAGCT GTTTACATTG CTGGGAAGAA TGGAAAACGG TATCCGTCAG TTGCTGGAAC AGATCCAGCA AAAGAATGAT GCCCTGAGTG CCCGTATTGT TGCCAGAAAA CGTGTGGAAA AGCCGCTTAT AGACAATGAA GTCTTGTTTG AAGGGATCGT TGGTCGCAGT CCTGTTTTTC TGAGTGTATT ACATAGTATC AACATGGTGT CCGCAGCGCC AAGTTCTGTA CTGATACTGG GAGAAAGTGG TACAGGTAAG GAACTGATTG CGCGATGTAT ACACCGGCAG TCTCCCCGTA AGAATAAACC ATTGATCACG GTGAATTGTG CCGCCTTACC TGCTGAGCTG ATAGAATCTG AGTTGTTTGG GCATGAGAAA GGCGCATTTA CAGGTGCGAC TGATAAACGT GCAGGTAAAT TTGAAATGGC AGACGGTGGT ACGATCTTCC TGGATGAAAT AGGTGAACTG CCTATAGAAT CCCAGGTAAA GCTGCTGCGT GTTTTGCAGG AGAAAGAGTT CGAAAGGGTC GGAGGGAGTA AGGTCATCAA GGTAGATGTA CGTGTGATTG CTGCTACGAA CAGAAACCTG GAGAAAGAAG TGGCGGAAGG TCGTTTCCGT CTGGATCTAT ATTACCGCCT GAATGTATTC CCTGTAGAAT TACCATCACT CAGAGAGCGT AAAGAAGATA TACCTTTGCT GGCACAACAT TTTGTGGATA AACTATCTGA GAAGCTAAGC CGTAATATTA CAGATATCAG TCCTGATGCC TTAAAAGCTT TACGGTCATA CGACTGGCCC GGAAACATCC GTGAAATGGA ACATGTGATG GAAAGGAGCC TGCTAATGAC GACGGGCACT ATCCTGAAAC AGATTATGCT GCCTAAAATG GCTGCGCAAC CGGTAGGAAC CACTATTTCA TCGGCTGATG GAAACAGGAT CAAAACCCTG GAGGAAATGG AAATAGAACA TATCCTGCAG GTGTTGAAAA GCTGTAAGGG AAAAGTATGT GGTGTTGGTG GCGCTGCAGA GTTATTAGGG CTGCCGCCCA GTACCCTGAA TTCCAAGATC AGGAAGCTGG GCATTAAGAG AGATTTTCAC TTTAAGGATT AA
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Protein sequence | MTMKENILIV EDEFIVGNDL RLMLIRAGYA VCGIAASVDE AKAMIERNKP SWVLLDIFLL DGSLGTDLAG YLRQKNIGFI YISANTNQSI LEIARATRPY GFLVKPFREK DLLIMLDIAR YKHQNNLQMA LQREQLMQKQ LQQIIEAPFE LADKIARIPD VLQTFVPFDY LHIAITGKRP HTLEDLSFQR TGFDEYEHLD NTALCKSLGL ERNTILTGRI AQLENETGGY LSDAEFRQWI ADKIWESKLS DHLRLNARLA IAVTLPAGNL AVISFYSRNA DTYTEELFTL LGRMENGIRQ LLEQIQQKND ALSARIVARK RVEKPLIDNE VLFEGIVGRS PVFLSVLHSI NMVSAAPSSV LILGESGTGK ELIARCIHRQ SPRKNKPLIT VNCAALPAEL IESELFGHEK GAFTGATDKR AGKFEMADGG TIFLDEIGEL PIESQVKLLR VLQEKEFERV GGSKVIKVDV RVIAATNRNL EKEVAEGRFR LDLYYRLNVF PVELPSLRER KEDIPLLAQH FVDKLSEKLS RNITDISPDA LKALRSYDWP GNIREMEHVM ERSLLMTTGT ILKQIMLPKM AAQPVGTTIS SADGNRIKTL EEMEIEHILQ VLKSCKGKVC GVGGAAELLG LPPSTLNSKI RKLGIKRDFH FKD
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