| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6000 |
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| Symbol | |
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| ID | 7380828 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 1003819 |
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| End bp | 1004613 |
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| Gene Length | 795 bp |
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| Protein Length | 264 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643649503 |
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| Product | two-component response regulator |
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| Protein accession | YP_002547734 |
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| Protein GI | 222106943 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCCTTA CCACCCGCGT CGCTGCTCAT ATTCCTTATT TGAGGCGATA TGCCCGAGCT
GTCACGGGCT CGCAGACATC GGGCGACGCC TATGTCGCCG CTGTTCTGGA GGCTCTGATC
GCCGATCTTT CGGTCTATCC CGAAGCCAGC AGTGATCGGG TTTCACTTTA TAAACTGTTT
GTCACGATTT TTGGCTCGAC CCATGTCGAA ATCCGGCCAA TGACCTCGCC TTTTGCCTGG
GAAAAACGGG CCGCTTCTAA TCTGTTGGCC GTTCCTCCGC GTGAGCGCCA CGCGTTCCTG
CTGATCTCAG TCGAAGGCTT TACCTATGAG GAAGCTGCGG AAGTGCTCGG CGTCAGCGAC
AGCGACTTCC GGGGTCTGTT CAACCAGGCC GCCGTGGAAA TCTCCCGCCA GGTGGCAACC
GACATCATGA TCATCGAAGA CGAACCGCTG ATCGCGCTCG ATATTGAGCA GATGGTGGAA
GATCTCGGTC ATCGCGTCAC CGGCATTGCC CGGACCCACA AGGAAGCCGT TGAGCTTTAT
GGCCGAACCA ACCCGAAAAT GGTGCTTGCC GACATCCAGC TAGCCGATGG AAGCTCCGGC
ATCGACGCCA TCAACGATAT CCTGAAGGTG GATACCGTAC CGGTGATCTT CATTACCGCC
TTCCCGGAAC GTTTGCTGAC CGGCGAGCGG CCGGAACCTG CTTTTCTCGT CACCAAGCCG
TTCAATCCCG ATATGGTCAA GGCACTGATC AGCCAGGCAC TGTTCTTCAA CGAACATGCC
AAACAGGATG CCTGA
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| Protein sequence | MSLTTRVAAH IPYLRRYARA VTGSQTSGDA YVAAVLEALI ADLSVYPEAS SDRVSLYKLF
VTIFGSTHVE IRPMTSPFAW EKRAASNLLA VPPRERHAFL LISVEGFTYE EAAEVLGVSD
SDFRGLFNQA AVEISRQVAT DIMIIEDEPL IALDIEQMVE DLGHRVTGIA RTHKEAVELY
GRTNPKMVLA DIQLADGSSG IDAINDILKV DTVPVIFITA FPERLLTGER PEPAFLVTKP
FNPDMVKALI SQALFFNEHA KQDA
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