| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0287 |
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| Symbol | |
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| ID | 4082647 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 284220 |
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| End bp | 285014 |
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| Gene Length | 795 bp |
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| Protein Length | 264 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638008645 |
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| Product | two-component response regulator |
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| Protein accession | YP_615343 |
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| Protein GI | 103485782 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.162207 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.615861 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCATTGG GCGACGAAAT CCGCGGGCAT CTTCCCTATC TGCGCCGCTA TGCGCGCGCG
CTGACGGGCA GCCAGCAGCA TGGCGACAAT TTCGTCCACG CACTGCTGGA GGTGATCGTC
GCGGCACCCG ACGAGTTCCG CAGCGGCGCC GGCAGCCGCA TCGACCTTTA TCGCGGTTTT
CACCGCATCT GGGAAAGCGC CTATATCGAC GATGGCGAAG GCAGCGACGA CGCCGAAAAC
CCGCTCGTCC GCGCGGCGCA CCAGCGACTT CGGCAGATGA CGCCGCTCGG TCGCCAGATA
TTGCTGCTCA CCGCGCTCGA AGGCTTTTCG GTCGAGGAAG CGGGACAGAT CACGGGCACC
GACACGGCGA CGGTCGAAAC GCTGCTTGCC GACGCGGTCG CCGACCTCGA CCGCGAATCG
CGCACCTCGG TGCTCATCAT CGAGGACGAG CCGCTGATCG CGATGGAACT CGAACAGATC
GTCCGCAGCC TGGGGCACGA GATCGCGGGA ATCGCGACGA CGCACGAGGA TGCGGTTGCG
GCGTTCGAGG ACACCGATGC CGGGCTGGTG CTTGCCGACA TCCAGCTCGC CGACGGATCA
TCGGGGATCG ACGCGGTGCA GGACATATTG GCGCGCGCGC CGGTTCCCGC CATCTTCATC
ACCGCCTTTC CCGAACGGCT GCTCACCGGC GGACGGGTCG AGCCGACCTT CCTCATCTCC
AAGCCATTCC GCGAAAATAC GGTGCGCGCG GCGATCAGCC AGAGCCTGCT CTTCACGCCG
CAGCTCGCGG CATAG
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| Protein sequence | MALGDEIRGH LPYLRRYARA LTGSQQHGDN FVHALLEVIV AAPDEFRSGA GSRIDLYRGF
HRIWESAYID DGEGSDDAEN PLVRAAHQRL RQMTPLGRQI LLLTALEGFS VEEAGQITGT
DTATVETLLA DAVADLDRES RTSVLIIEDE PLIAMELEQI VRSLGHEIAG IATTHEDAVA
AFEDTDAGLV LADIQLADGS SGIDAVQDIL ARAPVPAIFI TAFPERLLTG GRVEPTFLIS
KPFRENTVRA AISQSLLFTP QLAA
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