More than 300 homologs were found in PanDaTox collection
for query gene Caul_4330 on replicon NC_010338
Organism: Caulobacter sp. K31



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010338  Caul_4330  response regulator receiver protein  100 
 
 
127 aa  252  1.0000000000000001e-66  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_007490  RSP_4195  response regulator receiver protein  45.38 
 
 
154 aa  103  5e-22  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.81513  n/a   
 
 
-
 
NC_009430  Rsph17025_4165  hypothetical protein  44.54 
 
 
153 aa  101  3e-21  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_3178  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  42.86 
 
 
426 aa  95.9  2e-19  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3896  two component transcriptional regulator, LytTR family  38.26 
 
 
245 aa  95.1  3e-19  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.356034 
 
 
-
 
NC_011832  Mpal_2212  response regulator receiver protein  38.46 
 
 
122 aa  95.1  3e-19  Methanosphaerula palustris E1-9c  Archaea  normal  0.092497  normal  0.290386 
 
 
-
 
NC_008609  Ppro_3008  multi-sensor hybrid histidine kinase  38.52 
 
 
953 aa  94  6e-19  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_4326  PAS/PAC sensor hybrid histidine kinase  39.13 
 
 
571 aa  90.9  5e-18  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_1497  putative PAS/PAC sensor protein  39.13 
 
 
380 aa  89.7  1e-17  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.506851  normal  0.137069 
 
 
-
 
NC_014248  Aazo_1725  multi-sensor signal transduction histidine kinase  36.67 
 
 
499 aa  89.4  2e-17  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_1311  putative PAS/PAC sensor protein  40.87 
 
 
340 aa  87.8  5e-17  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.187179 
 
 
-
 
NC_009712  Mboo_1609  response regulator receiver protein  40.71 
 
 
463 aa  87.8  5e-17  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.672475  normal  0.374216 
 
 
-
 
NC_011769  DvMF_2677  response regulator receiver sensor hybrid histidine kinase  40.68 
 
 
636 aa  87.8  5e-17  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.068934 
 
 
-
 
NC_009712  Mboo_2407  response regulator receiver protein  37.82 
 
 
182 aa  86.7  9e-17  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_011884  Cyan7425_4302  signal transduction histidine kinase  37.29 
 
 
343 aa  86.7  1e-16  Cyanothece sp. PCC 7425  Bacteria  normal  0.219335  normal  0.321802 
 
 
-
 
NC_011726  PCC8801_0428  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  35.65 
 
 
455 aa  85.5  2e-16  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007948  Bpro_3511  response regulator receiver sensor signal transduction histidine kinase  38.26 
 
 
384 aa  84.7  4e-16  Polaromonas sp. JS666  Bacteria  normal  normal  0.253652 
 
 
-
 
NC_009483  Gura_2117  putative PAS/PAC sensor protein  36.52 
 
 
257 aa  84.3  5e-16  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_1557  response regulator receiver  37.39 
 
 
131 aa  84.3  5e-16  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000000412225  n/a   
 
 
-
 
NC_007413  Ava_0066  response regulator receiver sensor signal transduction histidine kinase  35.65 
 
 
377 aa  83.6  8e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  0.359193  normal  0.0132857 
 
 
-
 
NC_007355  Mbar_A3448  putative transcriptional regulator  33.06 
 
 
143 aa  83.6  9e-16  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.132297  normal  0.0606491 
 
 
-
 
NC_007955  Mbur_2285  response regulator receiver  34.45 
 
 
130 aa  83.6  9e-16  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000158247  n/a   
 
 
-
 
NC_007955  Mbur_2294  response regulator receiver  37.84 
 
 
134 aa  83.6  9e-16  Methanococcoides burtonii DSM 6242  Archaea  normal  0.371138  n/a   
 
 
-
 
NC_009712  Mboo_0900  response regulator receiver protein  30.89 
 
 
126 aa  83.6  0.000000000000001  Candidatus Methanoregula boonei 6A8  Archaea  normal  hitchhiker  0.000110071 
 
 
-
 
NC_013161  Cyan8802_0439  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  34.78 
 
 
455 aa  82.4  0.000000000000002  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.444664 
 
 
-
 
NC_011729  PCC7424_4564  response regulator receiver sensor signal transduction histidine kinase  37.39 
 
 
376 aa  82.4  0.000000000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.531352 
 
 
-
 
NC_007796  Mhun_2637  putative PAS/PAC sensor protein  34.71 
 
 
461 aa  82  0.000000000000002  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_007948  Bpro_3510  PAS/PAC sensor hybrid histidine kinase  40.83 
 
 
521 aa  82  0.000000000000003  Polaromonas sp. JS666  Bacteria  normal  normal  0.269968 
 
 
-
 
NC_009712  Mboo_1808  putative PAS/PAC sensor protein  34.45 
 
 
603 aa  81.6  0.000000000000003  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.268482 
 
 
-
 
NC_007796  Mhun_2576  response regulator receiver domain-containing protein  34.19 
 
 
122 aa  81.3  0.000000000000005  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_007355  Mbar_A2510  transcriptional regulator  33.04 
 
 
157 aa  80.9  0.000000000000006  Methanosarcina barkeri str. Fusaro  Archaea  decreased coverage  0.000843612  normal  0.354799 
 
 
-
 
NC_007796  Mhun_1724  response regulator receiver domain-containing protein  35.4 
 
 
352 aa  80.5  0.000000000000007  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_007498  Pcar_2709  two component signal transduction response regulator  37.29 
 
 
429 aa  79.7  0.00000000000001  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_4529  multi-sensor hybrid histidine kinase  36.97 
 
 
989 aa  79.7  0.00000000000001  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_1528  response regulator receiver protein  37.39 
 
 
450 aa  78.6  0.00000000000002  Candidatus Methanoregula boonei 6A8  Archaea  hitchhiker  0.00374994  normal  0.77554 
 
 
-
 
NC_009712  Mboo_1813  response regulator receiver protein  32.77 
 
 
316 aa  78.6  0.00000000000003  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.445517  normal  0.445863 
 
 
-
 
NC_009712  Mboo_1912  response regulator receiver protein  35.65 
 
 
263 aa  77.8  0.00000000000004  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.181503  normal  0.732361 
 
 
-
 
NC_007955  Mbur_0841  response regulator receiver  30.83 
 
 
135 aa  77.8  0.00000000000005  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_009712  Mboo_1488  response regulator receiver protein  36.52 
 
 
450 aa  77.4  0.00000000000006  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.379239 
 
 
-
 
NC_007413  Ava_3003  PAS/PAC sensor hybrid histidine kinase  34.45 
 
 
498 aa  77.4  0.00000000000006  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007796  Mhun_0455  response regulator receiver domain-containing protein  36.21 
 
 
238 aa  77.4  0.00000000000006  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.21261 
 
 
-
 
NC_010551  BamMC406_1235  multi-sensor hybrid histidine kinase  35.29 
 
 
989 aa  77  0.00000000000007  Burkholderia ambifaria MC40-6  Bacteria  normal  0.172784  normal 
 
 
-
 
NC_007908  Rfer_0895  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  35.29 
 
 
701 aa  77.4  0.00000000000007  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_2337  signal transduction histidine kinase  31.4 
 
 
352 aa  77  0.00000000000009  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_1360  putative PAS/PAC sensor protein  36.97 
 
 
429 aa  76.6  0.0000000000001  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00110028  hitchhiker  0.000665614 
 
 
-
 
NC_011769  DvMF_1460  putative PAS/PAC sensor protein  36.52 
 
 
474 aa  75.5  0.0000000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.81808 
 
 
-
 
NC_009712  Mboo_2336  response regulator receiver protein  32.26 
 
 
355 aa  74.3  0.0000000000005  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.404573  normal  0.642469 
 
 
-
 
NC_009712  Mboo_1007  putative GAF sensor protein  34.96 
 
 
311 aa  73.9  0.0000000000006  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.164021  normal  0.860345 
 
 
-
 
NC_007796  Mhun_3039  response regulator receiver sensor signal transduction histidine kinase  36.13 
 
 
355 aa  73.9  0.0000000000006  Methanospirillum hungatei JF-1  Archaea  normal  0.610599  normal 
 
 
-
 
NC_009712  Mboo_1242  multi-sensor signal transduction histidine kinase  30.43 
 
 
472 aa  73.9  0.0000000000008  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.41521  normal 
 
 
-
 
NC_009712  Mboo_1807  putative PAS/PAC sensor protein  32.77 
 
 
258 aa  73.6  0.0000000000009  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.254511 
 
 
-
 
NC_009483  Gura_1730  multi-sensor signal transduction histidine kinase  32.8 
 
 
591 aa  73.6  0.000000000001  Geobacter uraniireducens Rf4  Bacteria  normal  0.319599  n/a   
 
 
-
 
NC_007796  Mhun_2645  putative PAS/PAC sensor protein  33.91 
 
 
336 aa  73.6  0.000000000001  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_008554  Sfum_2639  multi-sensor hybrid histidine kinase  34.17 
 
 
817 aa  72.4  0.000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_2282  histidine kinase  40 
 
 
667 aa  71.6  0.000000000003  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_1358  putative PAS/PAC sensor protein  34.21 
 
 
404 aa  71.6  0.000000000003  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.873442  normal  0.0258422 
 
 
-
 
NC_013173  Dbac_0866  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  31.3 
 
 
701 aa  72  0.000000000003  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.711392  n/a   
 
 
-
 
NC_007519  Dde_1631  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  35.29 
 
 
561 aa  72  0.000000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.608678  n/a   
 
 
-
 
NC_013132  Cpin_0268  sigma54 specific transcriptional regulator, Fis family  31.58 
 
 
651 aa  72  0.000000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_011832  Mpal_0048  putative PAS/PAC sensor protein  32.17 
 
 
255 aa  71.6  0.000000000003  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_007908  Rfer_0893  response regulator receiver sensor signal transduction histidine kinase  34.78 
 
 
359 aa  71.6  0.000000000004  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_3671  Sigma 54 interacting domain protein  31.3 
 
 
657 aa  71.2  0.000000000004  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4853  two component, sigma54 specific, transcriptional regulator, Fis family  31.58 
 
 
457 aa  71.6  0.000000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.231814  hitchhiker  0.00735887 
 
 
-
 
NC_009511  Swit_3925  two-component response regulator  36.44 
 
 
264 aa  70.9  0.000000000005  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0434  putative PAS/PAC sensor protein  31.15 
 
 
458 aa  70.5  0.000000000008  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_011832  Mpal_0573  response regulator receiver protein  33.91 
 
 
261 aa  70.1  0.000000000009  Methanosphaerula palustris E1-9c  Archaea  normal  0.666159  normal  0.332219 
 
 
-
 
NC_007796  Mhun_2686  putative PAS/PAC sensor protein  32.17 
 
 
337 aa  68.9  0.00000000002  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.209027 
 
 
-
 
NC_009636  Smed_2347  two-component response regulator  36.21 
 
 
264 aa  68.2  0.00000000003  Sinorhizobium medicae WSM419  Bacteria  normal  0.177509  normal 
 
 
-
 
NC_009972  Haur_0985  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  28.23 
 
 
704 aa  67.8  0.00000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  decreased coverage  0.000494124  n/a   
 
 
-
 
NC_007519  Dde_3002  putative PAS/PAC sensor protein  33.91 
 
 
469 aa  67.8  0.00000000005  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.345319  n/a   
 
 
-
 
NC_011832  Mpal_1773  response regulator receiver sensor signal transduction histidine kinase  31.93 
 
 
386 aa  67.4  0.00000000006  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_007955  Mbur_0834  response regulator receiver  30.89 
 
 
134 aa  67  0.00000000009  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000017528  n/a   
 
 
-
 
NC_014230  CA2559_08681  transcriptional regulator  26.27 
 
 
240 aa  65.5  0.0000000002  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.803849  n/a   
 
 
-
 
NC_011729  PCC7424_1114  response regulator receiver sensor signal transduction histidine kinase  29.57 
 
 
373 aa  66.2  0.0000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008048  Sala_2186  two-component response regulator  36.97 
 
 
264 aa  65.9  0.0000000002  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_0913  response regulator receiver protein  28.7 
 
 
124 aa  65.1  0.0000000003  Candidatus Methanoregula boonei 6A8  Archaea  normal  hitchhiker  0.0000000115879 
 
 
-
 
NC_013730  Slin_3427  two component transcriptional regulator, LytTR family  31.93 
 
 
256 aa  65.1  0.0000000003  Spirosoma linguale DSM 74  Bacteria  normal  0.239231  normal 
 
 
-
 
NC_007796  Mhun_0118  putative PAS/PAC sensor protein  31.93 
 
 
265 aa  65.5  0.0000000003  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_013132  Cpin_4365  two component, sigma54 specific, transcriptional regulator, Fis family  27.83 
 
 
471 aa  65.1  0.0000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.231326 
 
 
-
 
NC_010338  Caul_4556  response regulator  35.4 
 
 
155 aa  64.7  0.0000000004  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_2932  two-component response regulator  35.34 
 
 
269 aa  64.3  0.0000000005  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1274  two-component response regulator  35.34 
 
 
269 aa  64.3  0.0000000005  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_2703  two-component response regulator  35.34 
 
 
269 aa  64.3  0.0000000005  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0297  response regulator receiver/ANTAR domain-containing protein  32.17 
 
 
195 aa  64.3  0.0000000005  Petrotoga mobilis SJ95  Bacteria  normal  0.719259  n/a   
 
 
-
 
NC_007498  Pcar_2711  two component signal transduction response regulator  31.09 
 
 
131 aa  64.3  0.0000000006  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_4327  transcriptional regulator, NifA subfamily, Fis Family  32.17 
 
 
875 aa  63.9  0.0000000006  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.184763 
 
 
-
 
NC_007796  Mhun_1200  response regulator receiver domain-containing protein  32.23 
 
 
248 aa  63.5  0.0000000009  Methanospirillum hungatei JF-1  Archaea  normal  0.0783054  normal  0.0763711 
 
 
-
 
NC_009712  Mboo_1517  response regulator receiver protein  35.04 
 
 
127 aa  62.8  0.000000001  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.394491  normal  0.160821 
 
 
-
 
NC_013132  Cpin_6068  response regulator receiver protein  27.27 
 
 
248 aa  62.8  0.000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_1348  two component, sigma54 specific, transcriptional regulator, Fis family  30.7 
 
 
461 aa  62  0.000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0031  response regulator receiver protein  41.38 
 
 
243 aa  61.6  0.000000003  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3566  two-component response regulator  35.04 
 
 
275 aa  61.6  0.000000003  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2207  sigma54 specific transcriptional regulator, Fis family  31.3 
 
 
653 aa  61.2  0.000000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  hitchhiker  0.000576072 
 
 
-
 
NC_008686  Pden_2822  two-component response regulator  35.9 
 
 
267 aa  60.8  0.000000005  Paracoccus denitrificans PD1222  Bacteria  normal  0.230061  normal 
 
 
-
 
NC_007517  Gmet_0660  response regulator receiver/ANTAR domain-containing protein  33.33 
 
 
202 aa  60.5  0.000000008  Geobacter metallireducens GS-15  Bacteria  normal  0.132289  normal  0.0166929 
 
 
-
 
NC_009712  Mboo_2032  response regulator receiver protein  31.3 
 
 
387 aa  60.5  0.000000008  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.0686114 
 
 
-
 
NC_013235  Namu_3061  response regulator receiver and ANTAR domain protein  36.52 
 
 
194 aa  60.1  0.000000009  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00113676  hitchhiker  0.000689676 
 
 
-
 
NC_010511  M446_2725  two-component response regulator  33.62 
 
 
267 aa  60.5  0.000000009  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.127392 
 
 
-
 
NC_009667  Oant_1246  two-component response regulator  32.17 
 
 
264 aa  60.1  0.000000009  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.660623  n/a   
 
 
-
 
NC_011894  Mnod_4399  two-component response regulator  33.62 
 
 
267 aa  60.5  0.000000009  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.042433  n/a   
 
 
-
 
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