| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2186 |
|---|
| Symbol | |
|---|
| ID | 4080220 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 2296991 |
|---|
| End bp | 2297785 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638010564 |
|---|
| Product | two-component response regulator |
|---|
| Protein accession | YP_617228 |
|---|
| Protein GI | 103487667 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTTGG GTCAGTCGAT CGCGCCGCAT CTTCCTTATC TGCGGCGCTA TGGCCGGTCC
GTTTCGGGGA ACCAGCAGAG CGGCGACGCG CTTGTGGCCC GGATGCTTGA AACGCTTGTC
GCGAACCCAG ACGCTATCGA TCCCGACGCC GATCTGCGCA TCCAGCTTTA CCGGATGGTG
CATGACAATT TCGGTCTGAT GGCGCAGCAG GCGCCCCCCG ACGGCGAGCG GGCGCGCGGC
GACATGGCGA TCGCCGACGC GCGGCTGCGC CGCATCCCGT CGCTCGCGCG GCAGGCCTTG
CTGCTTACGG CGGTCGAGGG CTTCGGCATC GAGGACGCGG GCCGGATCAT CGGCCGCGAC
GCCGAAGCGG TGCGCGCGCT GATCCACGAC GCGACCGACG AGATCGAGCG CCAGACGCGC
GCGCGCATCC TGATCATCGA GGATGAACCG ATCATCGCGA TGGACATCGA AATGATCGTC
CGCGACCTTG GCCATGATGT CGTCGCGGTC GCGACGACCC ACGCCGAAGC GGTCGAAGAC
GCGCAGAAGC ACCAGCCCGG CCTTGTGCTC GCCGACATCC AGCTTGCCGA CAATAGTTCG
GGGATCGAGG CGGTGCAGGA AATCCTGTCG GACGTGAAGC TGCCCGTGAT TTTCATCACC
GCCTTCCCCG AACGGCTGCT CACCGGCGAC CGGCCCGAAC CGGCCTTCCT GCTGACCAAG
CCCTATCAGC CCGCGACGCT GCGCGCGGCG ATCTCGCAGG TGCTGTTCTT CGACGAAAGC
ACGGTTCCGG CCTGA
|
|---|
| Protein sequence | MSLGQSIAPH LPYLRRYGRS VSGNQQSGDA LVARMLETLV ANPDAIDPDA DLRIQLYRMV
HDNFGLMAQQ APPDGERARG DMAIADARLR RIPSLARQAL LLTAVEGFGI EDAGRIIGRD
AEAVRALIHD ATDEIERQTR ARILIIEDEP IIAMDIEMIV RDLGHDVVAV ATTHAEAVED
AQKHQPGLVL ADIQLADNSS GIEAVQEILS DVKLPVIFIT AFPERLLTGD RPEPAFLLTK
PYQPATLRAA ISQVLFFDES TVPA
|
|---|
| |