More than 300 homologs were found in PanDaTox collection
for query gene Rsph17025_4165 on replicon NC_009430
Organism: Rhodobacter sphaeroides ATCC 17025



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009430  Rsph17025_4165  hypothetical protein  100 
 
 
153 aa  303  6e-82  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007490  RSP_4195  response regulator receiver protein  76.47 
 
 
154 aa  216  7.999999999999999e-56  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.81513  n/a   
 
 
-
 
NC_011884  Cyan7425_3178  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  50 
 
 
426 aa  108  2.0000000000000002e-23  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007955  Mbur_1557  response regulator receiver  44.92 
 
 
131 aa  102  3e-21  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000000412225  n/a   
 
 
-
 
NC_010338  Caul_4330  response regulator receiver protein  44.54 
 
 
127 aa  101  3e-21  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_007955  Mbur_2285  response regulator receiver  41.67 
 
 
130 aa  99  2e-20  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000158247  n/a   
 
 
-
 
NC_007355  Mbar_A3448  putative transcriptional regulator  42.98 
 
 
143 aa  98.2  4e-20  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.132297  normal  0.0606491 
 
 
-
 
NC_007413  Ava_0066  response regulator receiver sensor signal transduction histidine kinase  44.64 
 
 
377 aa  97.8  4e-20  Anabaena variabilis ATCC 29413  Bacteria  normal  0.359193  normal  0.0132857 
 
 
-
 
NC_009483  Gura_2117  putative PAS/PAC sensor protein  44.83 
 
 
257 aa  95.5  2e-19  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_1497  putative PAS/PAC sensor protein  42.37 
 
 
380 aa  94.4  5e-19  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.506851  normal  0.137069 
 
 
-
 
NC_007955  Mbur_0841  response regulator receiver  39.5 
 
 
135 aa  93.6  9e-19  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_007413  Ava_4326  PAS/PAC sensor hybrid histidine kinase  39.66 
 
 
571 aa  92  2e-18  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_2677  response regulator receiver sensor hybrid histidine kinase  42.86 
 
 
636 aa  92.4  2e-18  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.068934 
 
 
-
 
NC_011832  Mpal_0573  response regulator receiver protein  38.33 
 
 
261 aa  89.7  1e-17  Methanosphaerula palustris E1-9c  Archaea  normal  0.666159  normal  0.332219 
 
 
-
 
NC_009712  Mboo_1528  response regulator receiver protein  38.98 
 
 
450 aa  89.7  1e-17  Candidatus Methanoregula boonei 6A8  Archaea  hitchhiker  0.00374994  normal  0.77554 
 
 
-
 
NC_007796  Mhun_1724  response regulator receiver domain-containing protein  40.18 
 
 
352 aa  89.7  1e-17  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_007796  Mhun_2637  putative PAS/PAC sensor protein  40.5 
 
 
461 aa  89.7  1e-17  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_011884  Cyan7425_2337  signal transduction histidine kinase  43.27 
 
 
352 aa  89.4  2e-17  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011832  Mpal_2212  response regulator receiver protein  40.17 
 
 
122 aa  89.4  2e-17  Methanosphaerula palustris E1-9c  Archaea  normal  0.092497  normal  0.290386 
 
 
-
 
NC_013730  Slin_3896  two component transcriptional regulator, LytTR family  37.82 
 
 
245 aa  88.6  3e-17  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.356034 
 
 
-
 
NC_008609  Ppro_3008  multi-sensor hybrid histidine kinase  40.83 
 
 
953 aa  88.2  4e-17  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_0985  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  38.02 
 
 
704 aa  87.8  5e-17  Herpetosiphon aurantiacus ATCC 23779  Bacteria  decreased coverage  0.000494124  n/a   
 
 
-
 
NC_008751  Dvul_2282  histidine kinase  41.94 
 
 
667 aa  87  7e-17  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_1730  multi-sensor signal transduction histidine kinase  40.17 
 
 
591 aa  87  9e-17  Geobacter uraniireducens Rf4  Bacteria  normal  0.319599  n/a   
 
 
-
 
NC_009712  Mboo_2407  response regulator receiver protein  40 
 
 
182 aa  86.7  1e-16  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_009712  Mboo_1813  response regulator receiver protein  40.5 
 
 
316 aa  85.9  2e-16  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.445517  normal  0.445863 
 
 
-
 
NC_009565  TBFG_11642  two component system transcriptional regulator  40.83 
 
 
205 aa  85.9  2e-16  Mycobacterium tuberculosis F11  Bacteria  normal  0.0378541  normal  0.634495 
 
 
-
 
NC_009712  Mboo_1311  putative PAS/PAC sensor protein  41.18 
 
 
340 aa  85.5  3e-16  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.187179 
 
 
-
 
NC_007796  Mhun_2645  putative PAS/PAC sensor protein  36.36 
 
 
336 aa  85.1  3e-16  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_007908  Rfer_0895  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  43.97 
 
 
701 aa  84.3  6e-16  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_1808  putative PAS/PAC sensor protein  37.19 
 
 
603 aa  84  6e-16  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.268482 
 
 
-
 
NC_007948  Bpro_3511  response regulator receiver sensor signal transduction histidine kinase  38.66 
 
 
384 aa  83.6  8e-16  Polaromonas sp. JS666  Bacteria  normal  normal  0.253652 
 
 
-
 
NC_007355  Mbar_A2510  transcriptional regulator  41.38 
 
 
157 aa  83.2  0.000000000000001  Methanosarcina barkeri str. Fusaro  Archaea  decreased coverage  0.000843612  normal  0.354799 
 
 
-
 
NC_011884  Cyan7425_4302  signal transduction histidine kinase  38.98 
 
 
343 aa  83.2  0.000000000000001  Cyanothece sp. PCC 7425  Bacteria  normal  0.219335  normal  0.321802 
 
 
-
 
NC_007908  Rfer_0893  response regulator receiver sensor signal transduction histidine kinase  42.24 
 
 
359 aa  83.2  0.000000000000001  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0268  sigma54 specific transcriptional regulator, Fis family  38.53 
 
 
651 aa  83.6  0.000000000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_1912  response regulator receiver protein  36.97 
 
 
263 aa  82.4  0.000000000000002  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.181503  normal  0.732361 
 
 
-
 
NC_014248  Aazo_1725  multi-sensor signal transduction histidine kinase  41.88 
 
 
499 aa  82.4  0.000000000000002  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0115  two component, sigma54 specific, transcriptional regulator, Fis family  38.53 
 
 
481 aa  82.4  0.000000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_1242  multi-sensor signal transduction histidine kinase  37.17 
 
 
472 aa  82.4  0.000000000000002  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.41521  normal 
 
 
-
 
NC_011726  PCC8801_0428  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  40.37 
 
 
455 aa  82.8  0.000000000000002  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007955  Mbur_2294  response regulator receiver  42.48 
 
 
134 aa  82.4  0.000000000000002  Methanococcoides burtonii DSM 6242  Archaea  normal  0.371138  n/a   
 
 
-
 
NC_013161  Cyan8802_0439  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  39.45 
 
 
455 aa  82.8  0.000000000000002  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.444664 
 
 
-
 
NC_014230  CA2559_08681  transcriptional regulator  37.29 
 
 
240 aa  82  0.000000000000002  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.803849  n/a   
 
 
-
 
NC_010623  Bphy_4529  multi-sensor hybrid histidine kinase  41.32 
 
 
989 aa  81.3  0.000000000000005  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_1488  response regulator receiver protein  37.29 
 
 
450 aa  80.9  0.000000000000007  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.379239 
 
 
-
 
NC_011729  PCC7424_1114  response regulator receiver sensor signal transduction histidine kinase  38.46 
 
 
373 aa  80.5  0.000000000000007  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011832  Mpal_1773  response regulator receiver sensor signal transduction histidine kinase  36.97 
 
 
386 aa  80.9  0.000000000000007  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_007498  Pcar_2709  two component signal transduction response regulator  36.13 
 
 
429 aa  80.1  0.00000000000001  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_1235  multi-sensor hybrid histidine kinase  42.15 
 
 
989 aa  79.7  0.00000000000001  Burkholderia ambifaria MC40-6  Bacteria  normal  0.172784  normal 
 
 
-
 
NC_007796  Mhun_0118  putative PAS/PAC sensor protein  38.21 
 
 
265 aa  80.1  0.00000000000001  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_007796  Mhun_2576  response regulator receiver domain-containing protein  39.32 
 
 
122 aa  79.3  0.00000000000002  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_007796  Mhun_2686  putative PAS/PAC sensor protein  36.75 
 
 
337 aa  79.3  0.00000000000002  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.209027 
 
 
-
 
NC_009712  Mboo_1358  putative PAS/PAC sensor protein  37.5 
 
 
404 aa  79.3  0.00000000000002  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.873442  normal  0.0258422 
 
 
-
 
NC_008726  Mvan_2840  response regulator receiver/ANTAR domain-containing protein  41.38 
 
 
213 aa  79.3  0.00000000000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0401204  normal 
 
 
-
 
NC_009338  Mflv_3575  response regulator receiver/ANTAR domain-containing protein  40.52 
 
 
229 aa  79  0.00000000000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.10936  normal  0.0183031 
 
 
-
 
NC_007413  Ava_3003  PAS/PAC sensor hybrid histidine kinase  39.81 
 
 
498 aa  78.6  0.00000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3671  Sigma 54 interacting domain protein  38.79 
 
 
657 aa  77.8  0.00000000000004  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_3021  response regulator receiver/ANTAR domain-containing protein  39.83 
 
 
210 aa  77.4  0.00000000000006  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_3067  response regulator receiver/ANTAR domain-containing protein  39.83 
 
 
210 aa  77.4  0.00000000000006  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_007796  Mhun_3039  response regulator receiver sensor signal transduction histidine kinase  37.72 
 
 
355 aa  77.4  0.00000000000007  Methanospirillum hungatei JF-1  Archaea  normal  0.610599  normal 
 
 
-
 
NC_011831  Cagg_1360  putative PAS/PAC sensor protein  36.67 
 
 
429 aa  77.4  0.00000000000007  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00110028  hitchhiker  0.000665614 
 
 
-
 
NC_009077  Mjls_3036  response regulator receiver/ANTAR domain-containing protein  39.83 
 
 
210 aa  77.4  0.00000000000007  Mycobacterium sp. JLS  Bacteria  normal  0.222389  normal  0.216241 
 
 
-
 
NC_009712  Mboo_0900  response regulator receiver protein  35.9 
 
 
126 aa  75.5  0.0000000000002  Candidatus Methanoregula boonei 6A8  Archaea  normal  hitchhiker  0.000110071 
 
 
-
 
NC_007955  Mbur_0834  response regulator receiver  33.33 
 
 
134 aa  76.3  0.0000000000002  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000017528  n/a   
 
 
-
 
NC_009712  Mboo_1807  putative PAS/PAC sensor protein  32.5 
 
 
258 aa  75.1  0.0000000000003  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.254511 
 
 
-
 
NC_007796  Mhun_0455  response regulator receiver domain-containing protein  33.9 
 
 
238 aa  74.7  0.0000000000004  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.21261 
 
 
-
 
NC_009712  Mboo_2032  response regulator receiver protein  33.33 
 
 
387 aa  74.3  0.0000000000005  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.0686114 
 
 
-
 
NC_008554  Sfum_2639  multi-sensor hybrid histidine kinase  34.19 
 
 
817 aa  74.3  0.0000000000005  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_4327  transcriptional regulator, NifA subfamily, Fis Family  34.48 
 
 
875 aa  74.3  0.0000000000005  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.184763 
 
 
-
 
NC_013132  Cpin_4853  two component, sigma54 specific, transcriptional regulator, Fis family  37.38 
 
 
457 aa  74.3  0.0000000000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.231814  hitchhiker  0.00735887 
 
 
-
 
NC_009712  Mboo_1517  response regulator receiver protein  37.07 
 
 
127 aa  73.9  0.0000000000008  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.394491  normal  0.160821 
 
 
-
 
NC_011729  PCC7424_4564  response regulator receiver sensor signal transduction histidine kinase  37.93 
 
 
376 aa  72.8  0.000000000001  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.531352 
 
 
-
 
NC_013159  Svir_25990  response regulator with putative antiterminator output domain protein  38.1 
 
 
204 aa  73.2  0.000000000001  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_01100  sensory box/GGDEF family protein  33.6 
 
 
798 aa  72.8  0.000000000002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_6068  response regulator receiver protein  30.77 
 
 
248 aa  72.8  0.000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_3061  response regulator receiver and ANTAR domain protein  39.29 
 
 
194 aa  71.6  0.000000000003  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00113676  hitchhiker  0.000689676 
 
 
-
 
NC_008541  Arth_1694  response regulator receiver/ANTAR domain-containing protein  36.92 
 
 
201 aa  71.2  0.000000000004  Arthrobacter sp. FB24  Bacteria  normal  0.136848  n/a   
 
 
-
 
NC_007948  Bpro_3510  PAS/PAC sensor hybrid histidine kinase  37.5 
 
 
521 aa  71.2  0.000000000005  Polaromonas sp. JS666  Bacteria  normal  normal  0.269968 
 
 
-
 
NC_013441  Gbro_2893  response regulator receiver  37.93 
 
 
206 aa  70.9  0.000000000006  Gordonia bronchialis DSM 43247  Bacteria  normal  0.723289  n/a   
 
 
-
 
NC_013132  Cpin_2085  putative two component, sigma54 specific, transcriptional regulator, Fis family  34.95 
 
 
457 aa  70.9  0.000000000007  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2933  response regulator receiver and ANTAR domain protein  39.37 
 
 
194 aa  70.5  0.000000000008  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0803562  normal  0.225953 
 
 
-
 
NC_014230  CA2559_05930  DNA-binding response regulator, LuxR family protein  29.27 
 
 
207 aa  69.7  0.00000000001  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_1689  response regulator receiver and ANTAR domain protein  37.5 
 
 
201 aa  70.1  0.00000000001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000385738 
 
 
-
 
NC_013730  Slin_3427  two component transcriptional regulator, LytTR family  31.93 
 
 
256 aa  69.7  0.00000000001  Spirosoma linguale DSM 74  Bacteria  normal  0.239231  normal 
 
 
-
 
NC_011832  Mpal_0048  putative PAS/PAC sensor protein  32.76 
 
 
255 aa  69.7  0.00000000001  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_009636  Smed_2347  two-component response regulator  37.84 
 
 
264 aa  70.1  0.00000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.177509  normal 
 
 
-
 
NC_009505  BOV_1604  two-component response regulator  35.9 
 
 
264 aa  70.1  0.00000000001  Brucella ovis ATCC 25840  Bacteria  normal  0.476211  n/a   
 
 
-
 
NC_009667  Oant_1246  two-component response regulator  37.01 
 
 
264 aa  69.7  0.00000000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.660623  n/a   
 
 
-
 
NC_009664  Krad_2958  response regulator receiver and ANTAR domain protein  38.39 
 
 
229 aa  68.9  0.00000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.799557  normal  0.502809 
 
 
-
 
NC_004310  BR1657  two-component response regulator  38.05 
 
 
264 aa  69.3  0.00000000002  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1460  putative PAS/PAC sensor protein  37.07 
 
 
474 aa  69.7  0.00000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.81808 
 
 
-
 
NC_007575  Suden_1012  response regulator receiver domain-containing protein  26.42 
 
 
109 aa  69.3  0.00000000002  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3118  response regulator receiver/ANTAR domain-containing protein  35.54 
 
 
196 aa  68.9  0.00000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0434  putative PAS/PAC sensor protein  34.45 
 
 
458 aa  69.3  0.00000000002  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_0866  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  34.71 
 
 
701 aa  68.9  0.00000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.711392  n/a   
 
 
-
 
NC_009712  Mboo_1007  putative GAF sensor protein  36.07 
 
 
311 aa  68.9  0.00000000003  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.164021  normal  0.860345 
 
 
-
 
NC_014165  Tbis_1468  response regulator receiver and ANTAR domain-containing protein  37.93 
 
 
197 aa  68.9  0.00000000003  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_1609  response regulator receiver protein  33.77 
 
 
463 aa  68.9  0.00000000003  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.672475  normal  0.374216 
 
 
-
 
NC_009523  RoseRS_2361  response regulator receiver/ANTAR domain-containing protein  35.25 
 
 
196 aa  68.6  0.00000000003  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
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