More than 300 homologs were found in PanDaTox collection
for query gene Tgr7_0031 on replicon NC_011901
Organism: Thioalkalivibrio sp. HL-EbGR7



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011901  Tgr7_0031  response regulator receiver protein  100 
 
 
243 aa  494  1e-139  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3668  two-component response regulator AlgR  55.56 
 
 
243 aa  257  1e-67  Saccharophagus degradans 2-40  Bacteria  decreased coverage  0.00827536  normal  0.334671 
 
 
-
 
NC_009656  PSPA7_6007  alginate biosynthesis regulatory protein AlgR  53.23 
 
 
248 aa  253  1.0000000000000001e-66  Pseudomonas aeruginosa PA7  Bacteria  normal  0.404994  n/a   
 
 
-
 
NC_008463  PA14_69470  alginate biosynthesis regulatory protein AlgR  53.23 
 
 
248 aa  253  2.0000000000000002e-66  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.184834  normal 
 
 
-
 
NC_009439  Pmen_0279  two-component response regulator AlgR  52.42 
 
 
248 aa  251  6e-66  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_0127  alginate biosynthesis regulatory protein AlgR  51.21 
 
 
248 aa  251  7e-66  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0063  response regulator receiver:LytTr DNA-binding region  51.21 
 
 
248 aa  249  3e-65  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_5488  two-component response regulator AlgR  50.81 
 
 
248 aa  241  7e-63  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_47610  encystment and alginate biosynthesis response regulator; AlgR  48.58 
 
 
251 aa  230  2e-59  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_0210  LytTR family two component transcriptional regulator  47.37 
 
 
247 aa  226  4e-58  Pseudomonas putida GB-1  Bacteria  normal  0.375452  normal 
 
 
-
 
NC_010717  PXO_04138  two-component system regulatory protein  49.38 
 
 
245 aa  226  4e-58  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.739319  n/a   
 
 
-
 
NC_010501  PputW619_0255  LytTR family two component transcriptional regulator  46.96 
 
 
247 aa  224  1e-57  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0185  LytTR family two component transcriptional regulator  46.96 
 
 
247 aa  223  2e-57  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0207  LytTR family two component transcriptional regulator  46.96 
 
 
247 aa  223  2e-57  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_0488  response regulator receiver protein  46.44 
 
 
252 aa  221  6e-57  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2671  response regulator receiver protein  48.59 
 
 
243 aa  220  9.999999999999999e-57  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  hitchhiker  0.000000000586434 
 
 
-
 
NC_007298  Daro_3679  LytR/AlgR family transcriptional regulator  46.22 
 
 
262 aa  218  6e-56  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010513  Xfasm12_1259  response regulator receiver protein  47.28 
 
 
252 aa  217  1e-55  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_1226  LytTR family two component transcriptional regulator  46.86 
 
 
252 aa  216  4e-55  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_0097  LytR/AlgR family transcriptional regulator  43.5 
 
 
245 aa  213  2.9999999999999995e-54  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_3531  two component transcriptional regulator, LytTR family  51.21 
 
 
243 aa  206  4e-52  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_0036  LytR/AlgR family transcriptional regulator  45.27 
 
 
248 aa  200  1.9999999999999998e-50  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_0231  LytR/AlgR family transcriptional regulator  46.99 
 
 
254 aa  194  1e-48  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.740894 
 
 
-
 
NC_011662  Tmz1t_1435  two component transcriptional regulator, LytTR family  44.22 
 
 
264 aa  186  2e-46  Thauera sp. MZ1T  Bacteria  normal  0.314663  n/a   
 
 
-
 
NC_007948  Bpro_3670  LytR/AlgR family transcriptional regulator  41.22 
 
 
246 aa  175  5e-43  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A1113  LytR/AlgR family transcriptional regulator  39.29 
 
 
256 aa  162  5.0000000000000005e-39  Methylibium petroleiphilum PM1  Bacteria  normal  0.45992  normal  0.29087 
 
 
-
 
NC_008786  Veis_2880  response regulator receiver protein  41.37 
 
 
253 aa  158  9e-38  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.313062  normal  0.0817302 
 
 
-
 
NC_008782  Ajs_3314  LytR/AlgR family transcriptional regulator  39.39 
 
 
250 aa  156  2e-37  Acidovorax sp. JS42  Bacteria  normal  0.742064  normal  0.13531 
 
 
-
 
NC_008781  Pnap_3096  response regulator receiver protein  39.34 
 
 
247 aa  154  1e-36  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_1712  LytR/AlgR family transcriptional regulator  38.96 
 
 
246 aa  154  2e-36  Rhodoferax ferrireducens T118  Bacteria  normal  0.42147  n/a   
 
 
-
 
NC_010002  Daci_5318  LytTR family two component transcriptional regulator  38.52 
 
 
253 aa  154  2e-36  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.541549 
 
 
-
 
NC_011992  Dtpsy_2666  two component transcriptional regulator, LytTR family  39.36 
 
 
250 aa  146  3e-34  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_1947  LytR/AlgR family transcriptional regulator  37.8 
 
 
248 aa  144  1e-33  Acidovorax citrulli AAC00-1  Bacteria  normal  0.298927  decreased coverage  0.00301393 
 
 
-
 
NC_013501  Rmar_1860  two component transcriptional regulator, LytTR family  38.55 
 
 
266 aa  140  9.999999999999999e-33  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_1393  two component transcriptional regulator, LytTR family  39.51 
 
 
238 aa  140  1.9999999999999998e-32  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000000160197 
 
 
-
 
NC_008699  Noca_0357  response regulator receiver  38.02 
 
 
249 aa  138  6e-32  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_3773  two component transcriptional regulator, LytTR family  35.16 
 
 
260 aa  137  1e-31  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.10961  normal 
 
 
-
 
NC_013132  Cpin_5734  two component transcriptional regulator, LytTR family  36.32 
 
 
257 aa  136  3.0000000000000003e-31  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0068  two component transcriptional regulator, LytTR family  36.18 
 
 
244 aa  135  4e-31  Catenulispora acidiphila DSM 44928  Bacteria  decreased coverage  0.00288448  normal 
 
 
-
 
NC_008541  Arth_1375  response regulator receiver protein  37.04 
 
 
239 aa  136  4e-31  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_2149  two component transcriptional regulator, LytTR family  36.63 
 
 
234 aa  135  5e-31  Halothiobacillus neapolitanus c2  Bacteria  hitchhiker  0.00472108  n/a   
 
 
-
 
NC_013440  Hoch_4801  two component transcriptional regulator, LytTR family  37.34 
 
 
240 aa  135  8e-31  Haliangium ochraceum DSM 14365  Bacteria  normal  0.154299  normal 
 
 
-
 
NC_007517  Gmet_2697  LytR/AlgR family transcriptional regulator  34.43 
 
 
240 aa  133  1.9999999999999998e-30  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6586  two component transcriptional regulator, LytTR family  31.38 
 
 
246 aa  132  3.9999999999999996e-30  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.318104  normal 
 
 
-
 
NC_009953  Sare_5008  LytTR family two component transcriptional regulator  35.54 
 
 
250 aa  132  3.9999999999999996e-30  Salinispora arenicola CNS-205  Bacteria  normal  0.135227  hitchhiker  0.0000288771 
 
 
-
 
NC_013165  Shel_00400  response regulator of the LytR/AlgR family  35.27 
 
 
237 aa  132  5e-30  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.132657  normal 
 
 
-
 
NC_009380  Strop_4494  LytTr DNA-binding region  34.57 
 
 
250 aa  131  7.999999999999999e-30  Salinispora tropica CNB-440  Bacteria  normal  0.0706486  normal  0.304613 
 
 
-
 
NC_007347  Reut_A1965  response regulator receiver:LytTr DNA-binding region  33.97 
 
 
273 aa  131  1.0000000000000001e-29  Ralstonia eutropha JMP134  Bacteria  normal  0.864475  n/a   
 
 
-
 
NC_014210  Ndas_4129  two component transcriptional regulator, LytTR family  40.59 
 
 
271 aa  131  1.0000000000000001e-29  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_0421  two component transcriptional regulator, LytTR family  34.13 
 
 
256 aa  130  2.0000000000000002e-29  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.268274 
 
 
-
 
NC_012791  Vapar_1363  two component transcriptional regulator, LytTR family  36.76 
 
 
248 aa  129  3e-29  Variovorax paradoxus S110  Bacteria  normal  0.124915  n/a   
 
 
-
 
NC_013203  Apar_1323  two component transcriptional regulator, LytTR family  32.64 
 
 
237 aa  129  5.0000000000000004e-29  Atopobium parvulum DSM 20469  Bacteria  normal  0.0540721  normal  0.0273831 
 
 
-
 
NC_013595  Sros_6324  response regulator receiver protein  36.59 
 
 
253 aa  129  5.0000000000000004e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.48372 
 
 
-
 
NC_013595  Sros_2762  response regulator receiver protein  36.18 
 
 
254 aa  129  6e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  0.330347  normal  0.784413 
 
 
-
 
NC_013889  TK90_0013  two component transcriptional regulator, LytTR family  34.85 
 
 
241 aa  128  7.000000000000001e-29  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.349161 
 
 
-
 
NC_014165  Tbis_2133  LytTR family two component transcriptional regulator  34.54 
 
 
248 aa  128  8.000000000000001e-29  Thermobispora bispora DSM 43833  Bacteria  normal  0.565653  normal 
 
 
-
 
NC_007973  Rmet_1381  LytR/AlgR family transcriptional regulator  32.33 
 
 
273 aa  128  9.000000000000001e-29  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.557466 
 
 
-
 
NC_007912  Sde_0480  response regulator receiver domain-containing protein  33.72 
 
 
265 aa  127  1.0000000000000001e-28  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_1153  two component transcriptional regulator, LytTR family  35.58 
 
 
299 aa  127  2.0000000000000002e-28  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_2443  LytTR family two component transcriptional regulator  35.69 
 
 
279 aa  126  2.0000000000000002e-28  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2858  response regulator receiver  35.32 
 
 
264 aa  126  3e-28  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_2594  putative two-component response-regulatory protein YehT  30.83 
 
 
236 aa  126  3e-28  Shewanella sp. ANA-3  Bacteria  normal  0.0103906  hitchhiker  0.00157605 
 
 
-
 
NC_013510  Tcur_3172  two component transcriptional regulator, LytTR family  33.46 
 
 
258 aa  125  5e-28  Thermomonospora curvata DSM 43183  Bacteria  decreased coverage  0.00901875  n/a   
 
 
-
 
NC_013037  Dfer_5142  two component transcriptional regulator, LytTR family  31.02 
 
 
244 aa  125  5e-28  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.546377  normal 
 
 
-
 
NC_008009  Acid345_3487  LytR/AlgR family transcriptional regulator  32.8 
 
 
253 aa  125  5e-28  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.76921  normal 
 
 
-
 
NC_007969  Pcryo_0765  LytR/AlgR family transcriptional regulator  30.08 
 
 
247 aa  125  8.000000000000001e-28  Psychrobacter cryohalolentis K5  Bacteria  normal  0.584976  normal  0.255142 
 
 
-
 
NC_010524  Lcho_3089  LytTR family two component transcriptional regulator  32.38 
 
 
278 aa  125  9e-28  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_013170  Ccur_01160  response regulator of the LytR/AlgR family  34.44 
 
 
238 aa  124  1e-27  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_2432  putative two-component response-regulatory protein YehT  30.42 
 
 
236 aa  124  1e-27  Shewanella sp. MR-4  Bacteria  decreased coverage  0.0000158974  hitchhiker  0.00361478 
 
 
-
 
NC_012880  Dd703_0957  putative two-component response-regulatory protein YehT  35.54 
 
 
241 aa  124  1e-27  Dickeya dadantii Ech703  Bacteria  normal  0.147856  n/a   
 
 
-
 
NC_009708  YpsIP31758_3221  putative two-component response-regulatory protein YehT  32.5 
 
 
238 aa  123  2e-27  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_07024  transcriptional regulator  34.48 
 
 
263 aa  124  2e-27  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009457  VC0395_A0224  putative two-component response-regulatory protein YehT  33.06 
 
 
237 aa  123  2e-27  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_2502  putative two-component response-regulatory protein YehT  30 
 
 
236 aa  124  2e-27  Shewanella sp. MR-7  Bacteria  decreased coverage  0.00178929  normal  0.0452702 
 
 
-
 
NC_013457  VEA_000974  response regulator of the LytR/AlgR family  34.48 
 
 
263 aa  123  3e-27  Vibrio sp. Ex25  Bacteria  normal  0.728867  n/a   
 
 
-
 
NC_010465  YPK_3358  putative two-component response-regulatory protein YehT  32.5 
 
 
238 aa  123  3e-27  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3485  putative two-component response-regulatory protein YehT  32.5 
 
 
238 aa  123  3e-27  Yersinia pestis Angola  Bacteria  normal  normal  0.159726 
 
 
-
 
NC_013204  Elen_0137  two component transcriptional regulator, LytTR family  33.61 
 
 
237 aa  123  3e-27  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_1548  putative two-component response-regulatory protein YehT  30.83 
 
 
236 aa  123  3e-27  Shewanella putrefaciens CN-32  Bacteria  normal  0.496368  n/a   
 
 
-
 
NC_007794  Saro_0190  LytR/AlgR family transcriptional regulator  34.02 
 
 
244 aa  122  4e-27  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.625509  n/a   
 
 
-
 
NC_010571  Oter_2329  LytTR family two component transcriptional regulator  32.27 
 
 
255 aa  122  4e-27  Opitutus terrae PB90-1  Bacteria  normal  0.0531557  decreased coverage  0.00207881 
 
 
-
 
NC_009253  Dred_2957  response regulator receiver protein  32.37 
 
 
236 aa  122  4e-27  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.00954821  n/a   
 
 
-
 
NC_010571  Oter_3913  LytTR family two component transcriptional regulator  32.55 
 
 
268 aa  122  5e-27  Opitutus terrae PB90-1  Bacteria  normal  0.316099  normal 
 
 
-
 
NC_012669  Bcav_3377  two component transcriptional regulator, LytTR family  35.68 
 
 
319 aa  122  6e-27  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_5278  two component transcriptional regulator, LytTR family  35.83 
 
 
281 aa  122  6e-27  Actinosynnema mirum DSM 43827  Bacteria  normal  0.415246  n/a   
 
 
-
 
NC_008048  Sala_0930  response regulator receiver protein  32.53 
 
 
243 aa  122  6e-27  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.748451 
 
 
-
 
NC_013216  Dtox_3200  two component transcriptional regulator, LytTR family  30.2 
 
 
256 aa  122  7e-27  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  hitchhiker  0.00000259787 
 
 
-
 
NC_007644  Moth_2172  LytR/AlgR family transcriptional regulator  31.17 
 
 
252 aa  121  9e-27  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0721488  normal  0.0255714 
 
 
-
 
NC_011992  Dtpsy_1069  two component transcriptional regulator, LytTR family  35.92 
 
 
276 aa  121  9.999999999999999e-27  Acidovorax ebreus TPSY  Bacteria  normal  0.257927  n/a   
 
 
-
 
NC_013730  Slin_3594  two component transcriptional regulator, LytTR family  29.84 
 
 
260 aa  120  9.999999999999999e-27  Spirosoma linguale DSM 74  Bacteria  normal  0.833136  normal  0.0457058 
 
 
-
 
NC_010571  Oter_0704  LytTR family two component transcriptional regulator  30.26 
 
 
276 aa  121  9.999999999999999e-27  Opitutus terrae PB90-1  Bacteria  normal  normal  0.674394 
 
 
-
 
NC_012912  Dd1591_0959  putative two-component response-regulatory protein YehT  35.12 
 
 
241 aa  120  1.9999999999999998e-26  Dickeya zeae Ech1591  Bacteria  normal  0.606019  n/a   
 
 
-
 
NC_009997  Sbal195_1695  putative two-component response-regulatory protein YehT  30.42 
 
 
236 aa  120  1.9999999999999998e-26  Shewanella baltica OS195  Bacteria  decreased coverage  0.00000884824  normal 
 
 
-
 
NC_011663  Sbal223_2685  putative two-component response-regulatory protein YehT  30.42 
 
 
236 aa  120  1.9999999999999998e-26  Shewanella baltica OS223  Bacteria  normal  0.0538398  hitchhiker  0.000367908 
 
 
-
 
NC_004347  SO_2823  putative two-component response-regulatory protein YehT  30 
 
 
236 aa  120  1.9999999999999998e-26  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010571  Oter_2328  LytTR family two component transcriptional regulator  33.73 
 
 
255 aa  120  1.9999999999999998e-26  Opitutus terrae PB90-1  Bacteria  normal  0.261765  decreased coverage  0.00199939 
 
 
-
 
NC_009665  Shew185_1658  putative two-component response-regulatory protein YehT  30.42 
 
 
236 aa  120  1.9999999999999998e-26  Shewanella baltica OS185  Bacteria  hitchhiker  0.00000000153786  n/a   
 
 
-
 
NC_009052  Sbal_1673  putative two-component response-regulatory protein YehT  30.42 
 
 
236 aa  120  1.9999999999999998e-26  Shewanella baltica OS155  Bacteria  hitchhiker  0.00000537167  n/a   
 
 
-
 
NC_011830  Dhaf_3686  two component transcriptional regulator, LytTR family  31.22 
 
 
251 aa  119  3e-26  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1330  LytTR family two component transcriptional regulator  34.94 
 
 
261 aa  119  3e-26  Thermobispora bispora DSM 43833  Bacteria  normal  0.80792  hitchhiker  0.00674538 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>