More than 300 homologs were found in PanDaTox collection
for query gene Mpe_A2860 on replicon NC_008825
Organism: Methylibium petroleiphilum PM1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008825  Mpe_A2860  response regulator  100 
 
 
198 aa  385  1e-106  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_2721  response regulator receiver protein  64.77 
 
 
201 aa  235  3e-61  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000310079 
 
 
-
 
NC_007484  Noc_1494  response regulator  39.31 
 
 
194 aa  113  2.0000000000000002e-24  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.621557  n/a   
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  39.34 
 
 
566 aa  86.7  2e-16  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_011831  Cagg_2933  response regulator receiver and ANTAR domain protein  31.58 
 
 
194 aa  87  2e-16  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0803562  normal  0.225953 
 
 
-
 
NC_013385  Adeg_0532  two component, sigma54 specific, transcriptional regulator, Fis family  36.76 
 
 
470 aa  83.2  0.000000000000002  Ammonifex degensii KC4  Bacteria  hitchhiker  0.00706375  n/a   
 
 
-
 
NC_011831  Cagg_2047  response regulator receiver and ANTAR domain protein  28.04 
 
 
191 aa  83.2  0.000000000000002  Chloroflexus aggregans DSM 9485  Bacteria  unclonable  0.000000169009  normal 
 
 
-
 
NC_009767  Rcas_3118  response regulator receiver/ANTAR domain-containing protein  31.58 
 
 
196 aa  83.6  0.000000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_2035  response regulator receiver/ANTAR domain-containing protein  29.38 
 
 
199 aa  82.8  0.000000000000003  Frankia sp. EAN1pec  Bacteria  normal  normal  0.480822 
 
 
-
 
NC_007517  Gmet_0555  two component, sigma54 specific, Fis family transcriptional regulator  35.21 
 
 
457 aa  82.4  0.000000000000004  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_4080  DNA-binding response regulator, LuxR family  36 
 
 
222 aa  82  0.000000000000006  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.542388  n/a   
 
 
-
 
NC_009523  RoseRS_2361  response regulator receiver/ANTAR domain-containing protein  32.46 
 
 
196 aa  81.6  0.000000000000007  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_1224  two component transcriptional regulator, winged helix family  34.71 
 
 
227 aa  80.9  0.00000000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0117785  hitchhiker  0.00926138 
 
 
-
 
NC_013173  Dbac_2713  two component, sigma54 specific, transcriptional regulator, Fis family  34.65 
 
 
454 aa  80.5  0.00000000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_4102  response regulator receiver/ANTAR domain-containing protein  29.05 
 
 
194 aa  80.9  0.00000000000001  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_3061  two component transcriptional regulator  34.96 
 
 
227 aa  79.7  0.00000000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.799336  n/a   
 
 
-
 
NC_011883  Ddes_2272  two component transcriptional regulator, winged helix family  34.33 
 
 
240 aa  80.1  0.00000000000002  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.543841  n/a   
 
 
-
 
NC_009767  Rcas_3658  response regulator receiver/ANTAR domain-containing protein  29.05 
 
 
194 aa  79.3  0.00000000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.568485 
 
 
-
 
NC_009972  Haur_4357  response regulator receiver/ANTAR domain-containing protein  32.14 
 
 
198 aa  79.7  0.00000000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.480943  n/a   
 
 
-
 
NC_011772  BCG9842_B5346  DNA-binding response regulator YycF  35.83 
 
 
235 aa  79  0.00000000000004  Bacillus cereus G9842  Bacteria  hitchhiker  0.000000234523  hitchhiker  0.00000000000323141 
 
 
-
 
NC_007777  Francci3_1618  response regulator receiver/ANTAR domain-containing protein  28.72 
 
 
199 aa  79  0.00000000000004  Frankia sp. CcI3  Bacteria  normal  0.144201  normal  0.292856 
 
 
-
 
NC_009674  Bcer98_4006  two component transcriptional regulator  35.83 
 
 
235 aa  79  0.00000000000004  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.010356  n/a   
 
 
-
 
NC_009380  Strop_3151  response regulator receiver  30.11 
 
 
206 aa  79.3  0.00000000000004  Salinispora tropica CNB-440  Bacteria  normal  normal  0.332536 
 
 
-
 
NC_010803  Clim_1831  multi-sensor signal transduction histidine kinase  39.47 
 
 
685 aa  79  0.00000000000005  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A5589  DNA-binding response regulator YycF  35.83 
 
 
235 aa  79  0.00000000000005  Bacillus cereus B4264  Bacteria  normal  0.0469644  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5259  two component transcriptional regulator  35.83 
 
 
235 aa  78.6  0.00000000000005  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000559572  n/a   
 
 
-
 
NC_003909  BCE_5615  DNA-binding response regulator YycF  35.83 
 
 
235 aa  78.6  0.00000000000006  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5319  DNA-binding response regulator YycF  35.83 
 
 
235 aa  78.6  0.00000000000006  Bacillus anthracis str. Sterne  Bacteria  normal  0.169223  n/a   
 
 
-
 
NC_005957  BT9727_5147  response regulator  35.83 
 
 
235 aa  78.6  0.00000000000006  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00168683  n/a   
 
 
-
 
NC_006274  BCZK5163  response regulator  35.83 
 
 
235 aa  78.6  0.00000000000006  Bacillus cereus E33L  Bacteria  hitchhiker  0.00196509  n/a   
 
 
-
 
NC_011773  BCAH820_5572  DNA-binding response regulator YycF  35.83 
 
 
235 aa  78.6  0.00000000000006  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.81316e-29 
 
 
-
 
NC_007530  GBAA_5715  DNA-binding response regulator YycF  35.83 
 
 
235 aa  78.6  0.00000000000006  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.656882  n/a   
 
 
-
 
NC_011658  BCAH187_A5650  DNA-binding response regulator YycF  35.83 
 
 
235 aa  78.6  0.00000000000006  Bacillus cereus AH187  Bacteria  hitchhiker  0.00563499  n/a   
 
 
-
 
NC_009338  Mflv_3575  response regulator receiver/ANTAR domain-containing protein  28.5 
 
 
229 aa  78.2  0.00000000000007  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.10936  normal  0.0183031 
 
 
-
 
NC_013441  Gbro_2893  response regulator receiver  30.39 
 
 
206 aa  78.2  0.00000000000008  Gordonia bronchialis DSM 43247  Bacteria  normal  0.723289  n/a   
 
 
-
 
NC_011898  Ccel_3394  two component transcriptional regulator, winged helix family  34.4 
 
 
230 aa  78.2  0.00000000000008  Clostridium cellulolyticum H10  Bacteria  normal  0.103692  n/a   
 
 
-
 
NC_009712  Mboo_1807  putative PAS/PAC sensor protein  34.96 
 
 
258 aa  77.8  0.0000000000001  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.254511 
 
 
-
 
NC_011898  Ccel_1892  two component transcriptional regulator, winged helix family  32.35 
 
 
228 aa  77  0.0000000000001  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.0000392  n/a   
 
 
-
 
NC_007517  Gmet_2145  two component, sigma54 specific, Fis family transcriptional regulator  37.39 
 
 
446 aa  77.4  0.0000000000001  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_5540  response regulator receiver and ANTAR domain protein  30.22 
 
 
200 aa  77.4  0.0000000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2333  two component transcriptional regulator  34.43 
 
 
232 aa  77.4  0.0000000000001  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_1110  response regulator receiver and ANTAR domain protein  27.46 
 
 
197 aa  76.6  0.0000000000002  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0520878  n/a   
 
 
-
 
NC_011769  DvMF_2677  response regulator receiver sensor hybrid histidine kinase  36.29 
 
 
636 aa  76.6  0.0000000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.068934 
 
 
-
 
NC_012034  Athe_1456  two component transcriptional regulator, winged helix family  28.88 
 
 
223 aa  76.6  0.0000000000002  Anaerocellum thermophilum DSM 6725  Bacteria  decreased coverage  0.000183373  n/a   
 
 
-
 
NC_011138  MADE_01717  putative response regulator  38.46 
 
 
568 aa  77  0.0000000000002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2061  response regulator receiver modulated diguanylate cyclase  35.77 
 
 
318 aa  76.6  0.0000000000002  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.0000000365539  n/a   
 
 
-
 
NC_013165  Shel_02200  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  35.48 
 
 
231 aa  76.6  0.0000000000002  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_2407  response regulator receiver protein  32.87 
 
 
182 aa  76.6  0.0000000000002  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_014158  Tpau_2483  response regulator receiver and ANTAR domain protein  35.59 
 
 
205 aa  77  0.0000000000002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1696  two component transcriptional regulator, winged helix family  32.81 
 
 
224 aa  76.6  0.0000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009565  TBFG_11642  two component system transcriptional regulator  27.75 
 
 
205 aa  76.6  0.0000000000002  Mycobacterium tuberculosis F11  Bacteria  normal  0.0378541  normal  0.634495 
 
 
-
 
NC_013739  Cwoe_3139  response regulator receiver modulated diguanylate cyclase  36.93 
 
 
676 aa  76.6  0.0000000000002  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.990746 
 
 
-
 
NC_008726  Mvan_2840  response regulator receiver/ANTAR domain-containing protein  28.65 
 
 
213 aa  77  0.0000000000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0401204  normal 
 
 
-
 
NC_008751  Dvul_1911  two component transcriptional regulator  38.85 
 
 
229 aa  76.6  0.0000000000002  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.258551 
 
 
-
 
NC_009972  Haur_0720  two component transcriptional regulator  33.33 
 
 
236 aa  76.6  0.0000000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_0925  two component, sigma54 specific, transcriptional regulator, Fis family  36.04 
 
 
484 aa  76.3  0.0000000000003  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.815173  normal 
 
 
-
 
NC_009487  SaurJH9_1750  two component transcriptional regulator  35.9 
 
 
234 aa  76.3  0.0000000000003  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_1784  alkaline phosphatase synthesis transcriptional regulatory protein  35.9 
 
 
234 aa  76.3  0.0000000000003  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.561076  n/a   
 
 
-
 
NC_010571  Oter_3856  response regulator receiver sensor signal transduction histidine kinase  35.29 
 
 
378 aa  75.9  0.0000000000004  Opitutus terrae PB90-1  Bacteria  normal  normal  0.215089 
 
 
-
 
NC_010483  TRQ2_1174  two component transcriptional regulator  30.05 
 
 
239 aa  75.9  0.0000000000004  Thermotoga sp. RQ2  Bacteria  normal  0.0181894  n/a   
 
 
-
 
NC_009486  Tpet_1136  two component transcriptional regulator  30.05 
 
 
239 aa  75.9  0.0000000000004  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000000652217  n/a   
 
 
-
 
NC_012918  GM21_2828  two component, sigma54 specific, transcriptional regulator, Fis family  37.72 
 
 
444 aa  75.9  0.0000000000004  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009712  Mboo_1488  response regulator receiver protein  34.68 
 
 
450 aa  75.5  0.0000000000005  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.379239 
 
 
-
 
NC_011146  Gbem_1426  two component, sigma54 specific, transcriptional regulator, Fis family  37.72 
 
 
444 aa  75.5  0.0000000000005  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_3378  response regulator receiver/ANTAR domain-containing protein  29.03 
 
 
206 aa  75.1  0.0000000000006  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0248143 
 
 
-
 
NC_009665  Shew185_4204  response regulator receiver modulated diguanylate cyclase  40.37 
 
 
310 aa  75.1  0.0000000000006  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_1200  two component transcriptional regulator  34.71 
 
 
238 aa  75.1  0.0000000000007  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3850  two component LuxR family transcriptional regulator  36.99 
 
 
209 aa  75.1  0.0000000000007  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2418  two component transcriptional regulator  37.19 
 
 
237 aa  75.1  0.0000000000007  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1834  multi-sensor signal transduction histidine kinase  35.83 
 
 
681 aa  74.7  0.0000000000007  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2867  two component transcriptional regulator, winged helix family  36.52 
 
 
233 aa  75.1  0.0000000000007  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_4132  response regulator receiver modulated diguanylate cyclase  40.37 
 
 
310 aa  75.1  0.0000000000007  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_007796  Mhun_2637  putative PAS/PAC sensor protein  32.92 
 
 
461 aa  74.7  0.0000000000008  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_008751  Dvul_2282  histidine kinase  37.5 
 
 
667 aa  74.7  0.0000000000008  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_1235  multi-sensor hybrid histidine kinase  34.4 
 
 
989 aa  74.7  0.0000000000009  Burkholderia ambifaria MC40-6  Bacteria  normal  0.172784  normal 
 
 
-
 
NC_008009  Acid345_0751  two component, sigma54 specific, Fis family transcriptional regulator  34.03 
 
 
485 aa  74.7  0.0000000000009  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0880271  normal 
 
 
-
 
NC_014248  Aazo_0581  winged helix family two component transcriptional regulator  35.54 
 
 
242 aa  73.9  0.000000000001  'Nostoc azollae' 0708  Bacteria  normal  0.296955  n/a   
 
 
-
 
NC_002939  GSU2915  sigma-54 dependent DNA-binding response regulator  34.75 
 
 
457 aa  73.9  0.000000000001  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_4336  response regulator receiver modulated diguanylate cyclase  39.45 
 
 
310 aa  73.9  0.000000000001  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA0474  transcriptional regulatory protein OmpR, putative  35.66 
 
 
238 aa  73.9  0.000000000001  Brucella suis 1330  Bacteria  normal  0.558106  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1399  two component transcriptional regulator  33.88 
 
 
238 aa  74.3  0.000000000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.129694  n/a   
 
 
-
 
NC_007413  Ava_1878  two component transcriptional regulator  35.54 
 
 
242 aa  74.3  0.000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.559477 
 
 
-
 
NC_011884  Cyan7425_1115  two component transcriptional regulator, winged helix family  34.33 
 
 
243 aa  73.9  0.000000000001  Cyanothece sp. PCC 7425  Bacteria  normal  0.0950226  normal 
 
 
-
 
NC_013216  Dtox_1013  two component, sigma54 specific, transcriptional regulator, Fis family  32.74 
 
 
456 aa  73.9  0.000000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.0616674 
 
 
-
 
NC_007604  Synpcc7942_1453  two component transcriptional regulator  33.88 
 
 
244 aa  74.3  0.000000000001  Synechococcus elongatus PCC 7942  Bacteria  normal  0.952418  normal  0.0249242 
 
 
-
 
NC_009976  P9211_01481  two-component response regulator  36.36 
 
 
248 aa  74.3  0.000000000001  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_3061  response regulator receiver and ANTAR domain protein  28.18 
 
 
194 aa  74.3  0.000000000001  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00113676  hitchhiker  0.000689676 
 
 
-
 
NC_011898  Ccel_2106  two component transcriptional regulator, winged helix family  32.33 
 
 
238 aa  74.3  0.000000000001  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0495  two component, sigma-54 specific, Fis family transcriptional regulator  33.9 
 
 
456 aa  73.9  0.000000000001  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0065  response regulator receiver domain-containing protein  33.61 
 
 
196 aa  73.2  0.000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.670969  normal  0.0252366 
 
 
-
 
NC_011772  BCG9842_B2796  DNA-binding response regulator  28.19 
 
 
231 aa  73.6  0.000000000002  Bacillus cereus G9842  Bacteria  normal  0.512352  hitchhiker  0.00000533196 
 
 
-
 
NC_007644  Moth_0070  two component transcriptional regulator  34.19 
 
 
229 aa  73.9  0.000000000002  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.834843 
 
 
-
 
NC_011725  BCB4264_A2526  DNA-binding response regulator  28.19 
 
 
231 aa  73.6  0.000000000002  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_0249  two component transcriptional regulator, winged helix family  35.88 
 
 
232 aa  73.6  0.000000000002  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_1237  two component transcriptional regulator, winged helix family  31.54 
 
 
232 aa  73.2  0.000000000002  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0413  putative transcriptional regulatory protein OmpR  35.66 
 
 
238 aa  73.2  0.000000000002  Brucella ovis ATCC 25840  Bacteria  normal  0.16231  n/a   
 
 
-
 
NC_009012  Cthe_0537  two component transcriptional regulator  33.62 
 
 
223 aa  73.6  0.000000000002  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.340982  n/a   
 
 
-
 
NC_009077  Mjls_3036  response regulator receiver/ANTAR domain-containing protein  32.2 
 
 
210 aa  73.6  0.000000000002  Mycobacterium sp. JLS  Bacteria  normal  0.222389  normal  0.216241 
 
 
-
 
NC_009523  RoseRS_0188  two component transcriptional regulator  35.09 
 
 
245 aa  73.6  0.000000000002  Roseiflexus sp. RS-1  Bacteria  hitchhiker  0.00347389  normal  0.0545477 
 
 
-
 
NC_009436  Ent638_1497  two component transcriptional regulator  33.58 
 
 
263 aa  73.6  0.000000000002  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
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