Gene Lcho_2721 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2721 
Symbol 
ID6160612 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp3000367 
End bp3000972 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content71% 
IMG OID641665498 
Productresponse regulator receiver protein 
Protein accessionYP_001791751 
Protein GI171059402 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.000310079 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGAATCCAT CTCCCGACAG CAAGGGCCGC ATCCTGGTCG TCGACGACGA CCGGCTGGTG 
CTCGCCACCC TGGTGCACGG CCTGTCGCAG GCCGGTTTCG AGGTGGTCGA CGCCGACAAC 
GGCGACGACG CCATCCTGCA GGCGCGCCAG CACAAGCCCG ATCTGGCGCT GCTCGACATC 
CGCATGGACG GCATGAGCGG CTTCGACGTG GCGGCCTATC TGCGCGAGCA CCTGCACCTG 
CCGTTCATGT TCCTGTCGGC CTTCTCCGAC GAGGCCACCG TGGCGCAGAT CAAGGCGCTG 
GGCGCCAAGG CCTACCTGGT CAAGCCGCTC GACATCGCCC AGATCGTGCC GGCGGTCGAG 
GCCGTGATGG CGCAGGTGCG CAGCGGCCCG GCGGCGCAGC CCGCCCGGCC GGCACCGGCC 
GAAGCCGATC CGCTGGCCCA GCCGGTGGCG ATCGCGGTGG GCATCGTCAT GCATCGCTAT 
TCGCTCACCG CCAGCGCCGC GCTGGCGCGC CTGCAGCAGC TGGCCGAGCG CGACGGTCGC 
CCGCTCGACG TCAGCTGCCG CGCGATGGTG CAGGCGGTCG AGCAACTGGC GCTGCCCGGA 
CTGTGA
 
Protein sequence
MNPSPDSKGR ILVVDDDRLV LATLVHGLSQ AGFEVVDADN GDDAILQARQ HKPDLALLDI 
RMDGMSGFDV AAYLREHLHL PFMFLSAFSD EATVAQIKAL GAKAYLVKPL DIAQIVPAVE 
AVMAQVRSGP AAQPARPAPA EADPLAQPVA IAVGIVMHRY SLTASAALAR LQQLAERDGR 
PLDVSCRAMV QAVEQLALPG L