More than 300 homologs were found in PanDaTox collection
for query gene Lcho_2721 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010524  Lcho_2721  response regulator receiver protein  100 
 
 
201 aa  394  1e-109  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000310079 
 
 
-
 
NC_008825  Mpe_A2860  response regulator  65.13 
 
 
198 aa  243  9.999999999999999e-64  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_007484  Noc_1494  response regulator  37.37 
 
 
194 aa  118  7.999999999999999e-26  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.621557  n/a   
 
 
-
 
NC_011831  Cagg_2933  response regulator receiver and ANTAR domain protein  37.21 
 
 
194 aa  100  1e-20  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0803562  normal  0.225953 
 
 
-
 
NC_009767  Rcas_3118  response regulator receiver/ANTAR domain-containing protein  34.39 
 
 
196 aa  92  5e-18  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_0804  two component LuxR family transcriptional regulator  39.86 
 
 
204 aa  91.7  6e-18  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_0720  two component transcriptional regulator  36.59 
 
 
236 aa  88.6  6e-17  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2361  response regulator receiver/ANTAR domain-containing protein  33.16 
 
 
196 aa  88.6  6e-17  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_1110  response regulator receiver and ANTAR domain protein  33.16 
 
 
197 aa  88.2  8e-17  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0520878  n/a   
 
 
-
 
NC_009972  Haur_4357  response regulator receiver/ANTAR domain-containing protein  32.04 
 
 
198 aa  86.7  2e-16  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.480943  n/a   
 
 
-
 
NC_009565  TBFG_11642  two component system transcriptional regulator  30.54 
 
 
205 aa  85.1  6e-16  Mycobacterium tuberculosis F11  Bacteria  normal  0.0378541  normal  0.634495 
 
 
-
 
NC_013216  Dtox_1554  two component transcriptional regulator, winged helix family  37.61 
 
 
229 aa  84.3  0.000000000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  hitchhiker  0.00709514 
 
 
-
 
NC_002967  TDE0149  DNA-binding response regulator  33.8 
 
 
201 aa  83.6  0.000000000000002  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  40.48 
 
 
566 aa  83.2  0.000000000000003  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_008751  Dvul_1911  two component transcriptional regulator  38.73 
 
 
229 aa  82.8  0.000000000000004  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.258551 
 
 
-
 
NC_013947  Snas_3775  response regulator receiver and ANTAR domain-containing protein  32.34 
 
 
207 aa  82  0.000000000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.665226  normal  0.0118196 
 
 
-
 
NC_009712  Mboo_2407  response regulator receiver protein  30.95 
 
 
182 aa  82  0.000000000000005  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_013124  Afer_0200  two component transcriptional regulator, winged helix family  33.86 
 
 
242 aa  81.6  0.000000000000008  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.0955644  n/a   
 
 
-
 
NC_013093  Amir_5540  response regulator receiver and ANTAR domain protein  32.34 
 
 
200 aa  80.9  0.00000000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_2907  two component transcriptional regulator  34.29 
 
 
250 aa  80.5  0.00000000000001  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_4720  DNA-binding response regulator PhoP  32.86 
 
 
239 aa  80.1  0.00000000000002  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_3151  response regulator receiver  31.76 
 
 
206 aa  80.1  0.00000000000002  Salinispora tropica CNB-440  Bacteria  normal  normal  0.332536 
 
 
-
 
NC_005945  BAS4484  DNA-binding response regulator PhoP  32.86 
 
 
239 aa  80.1  0.00000000000002  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_3378  response regulator receiver/ANTAR domain-containing protein  31.18 
 
 
206 aa  80.1  0.00000000000002  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0248143 
 
 
-
 
NC_005957  BT9727_4319  alkaline phosphatase synthesis response regulator  32.86 
 
 
239 aa  80.1  0.00000000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4330  alkaline phosphatase synthesis response regulator  32.86 
 
 
239 aa  80.1  0.00000000000002  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A4714  DNA-binding response regulator PhoP  32.86 
 
 
239 aa  80.1  0.00000000000002  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0297  response regulator receiver/ANTAR domain-containing protein  27.01 
 
 
195 aa  79.7  0.00000000000002  Petrotoga mobilis SJ95  Bacteria  normal  0.719259  n/a   
 
 
-
 
NC_007530  GBAA_4833  DNA-binding response regulator PhoP  32.86 
 
 
239 aa  80.1  0.00000000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0982965  n/a   
 
 
-
 
NC_013159  Svir_25990  response regulator with putative antiterminator output domain protein  31.09 
 
 
204 aa  80.5  0.00000000000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_011773  BCAH820_4704  DNA-binding response regulator PhoP  32.86 
 
 
239 aa  80.1  0.00000000000002  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000673192 
 
 
-
 
NC_010718  Nther_0251  response regulator receiver protein  32.79 
 
 
126 aa  79.3  0.00000000000003  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.102048 
 
 
-
 
NC_013595  Sros_8879  response regulator receiver protein  37.86 
 
 
235 aa  79.3  0.00000000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.103439  normal 
 
 
-
 
NC_010184  BcerKBAB4_4419  two component transcriptional regulator  32.86 
 
 
239 aa  79.3  0.00000000000003  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_4351  two component transcriptional regulator  28.5 
 
 
245 aa  79  0.00000000000004  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.110039  normal 
 
 
-
 
NC_014158  Tpau_2483  response regulator receiver and ANTAR domain protein  31.14 
 
 
205 aa  79.3  0.00000000000004  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_02200  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  31.58 
 
 
231 aa  79  0.00000000000004  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_1694  response regulator receiver/ANTAR domain-containing protein  33.6 
 
 
201 aa  79.3  0.00000000000004  Arthrobacter sp. FB24  Bacteria  normal  0.136848  n/a   
 
 
-
 
NC_013730  Slin_3896  two component transcriptional regulator, LytTR family  33.33 
 
 
245 aa  79  0.00000000000004  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.356034 
 
 
-
 
NC_011725  BCB4264_A5589  DNA-binding response regulator YycF  32.41 
 
 
235 aa  79  0.00000000000005  Bacillus cereus B4264  Bacteria  normal  0.0469644  n/a   
 
 
-
 
NC_009674  Bcer98_4006  two component transcriptional regulator  32.41 
 
 
235 aa  79  0.00000000000005  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.010356  n/a   
 
 
-
 
NC_009675  Anae109_0467  response regulator receiver protein  34.19 
 
 
124 aa  79  0.00000000000005  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.117091  normal  0.827791 
 
 
-
 
NC_009483  Gura_1146  response regulator receiver/ANTAR domain-containing protein  28.31 
 
 
188 aa  79  0.00000000000005  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.00000000356105  n/a   
 
 
-
 
NC_011725  BCB4264_A4699  DNA-binding response regulator PhoP  35.82 
 
 
239 aa  78.6  0.00000000000005  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B0539  DNA-binding response regulator PhoP  35.82 
 
 
239 aa  78.6  0.00000000000005  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.000130788 
 
 
-
 
NC_003909  BCE_5615  DNA-binding response regulator YycF  32.41 
 
 
235 aa  78.6  0.00000000000006  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5319  DNA-binding response regulator YycF  32.41 
 
 
235 aa  78.6  0.00000000000006  Bacillus anthracis str. Sterne  Bacteria  normal  0.169223  n/a   
 
 
-
 
NC_005957  BT9727_5147  response regulator  32.41 
 
 
235 aa  78.6  0.00000000000006  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00168683  n/a   
 
 
-
 
NC_006274  BCZK5163  response regulator  32.41 
 
 
235 aa  78.6  0.00000000000006  Bacillus cereus E33L  Bacteria  hitchhiker  0.00196509  n/a   
 
 
-
 
NC_007530  GBAA_5715  DNA-binding response regulator YycF  32.41 
 
 
235 aa  78.6  0.00000000000006  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.656882  n/a   
 
 
-
 
NC_011658  BCAH187_A5650  DNA-binding response regulator YycF  32.41 
 
 
235 aa  78.6  0.00000000000006  Bacillus cereus AH187  Bacteria  hitchhiker  0.00563499  n/a   
 
 
-
 
NC_011773  BCAH820_5572  DNA-binding response regulator YycF  32.41 
 
 
235 aa  78.6  0.00000000000006  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.81316e-29 
 
 
-
 
NC_009485  BBta_1549  LuxR transcriptional regulator  35.48 
 
 
201 aa  78.2  0.00000000000007  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.355184  normal  0.152747 
 
 
-
 
NC_010184  BcerKBAB4_5259  two component transcriptional regulator  34.68 
 
 
235 aa  78.2  0.00000000000007  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000559572  n/a   
 
 
-
 
NC_007796  Mhun_1724  response regulator receiver domain-containing protein  36.44 
 
 
352 aa  78.6  0.00000000000007  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_014165  Tbis_1468  response regulator receiver and ANTAR domain-containing protein  29.17 
 
 
197 aa  78.2  0.00000000000008  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B5346  DNA-binding response regulator YycF  31.72 
 
 
235 aa  78.2  0.00000000000008  Bacillus cereus G9842  Bacteria  hitchhiker  0.000000234523  hitchhiker  0.00000000000323141 
 
 
-
 
NC_013223  Dret_2392  two component, sigma54 specific, transcriptional regulator, Fis family  36.76 
 
 
458 aa  78.2  0.00000000000008  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0321511  normal 
 
 
-
 
NC_009012  Cthe_2333  two component transcriptional regulator  33.86 
 
 
232 aa  78.2  0.00000000000008  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0805  two component transcriptional regulator  35.59 
 
 
229 aa  77.8  0.00000000000009  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_3274  two component transcriptional regulator  34.62 
 
 
238 aa  77.8  0.0000000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_1136  two component transcriptional regulator  29.21 
 
 
239 aa  77.4  0.0000000000001  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000000652217  n/a   
 
 
-
 
NC_010483  TRQ2_1174  two component transcriptional regulator  29.21 
 
 
239 aa  77.4  0.0000000000001  Thermotoga sp. RQ2  Bacteria  normal  0.0181894  n/a   
 
 
-
 
NC_010320  Teth514_2061  response regulator receiver modulated diguanylate cyclase  36.84 
 
 
318 aa  77.4  0.0000000000001  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.0000000365539  n/a   
 
 
-
 
NC_007517  Gmet_0555  two component, sigma54 specific, Fis family transcriptional regulator  38.53 
 
 
457 aa  77.4  0.0000000000001  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2047  response regulator receiver and ANTAR domain protein  30.77 
 
 
191 aa  77.4  0.0000000000001  Chloroflexus aggregans DSM 9485  Bacteria  unclonable  0.000000169009  normal 
 
 
-
 
NC_007802  Jann_2695  response regulator receiver domain-containing protein  37.9 
 
 
186 aa  77.8  0.0000000000001  Jannaschia sp. CCS1  Bacteria  decreased coverage  0.00269866  normal  0.78823 
 
 
-
 
NC_009523  RoseRS_0188  two component transcriptional regulator  32.35 
 
 
245 aa  77.8  0.0000000000001  Roseiflexus sp. RS-1  Bacteria  hitchhiker  0.00347389  normal  0.0545477 
 
 
-
 
NC_011729  PCC7424_2267  two component transcriptional regulator, AraC family  37.39 
 
 
265 aa  77.8  0.0000000000001  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00808217 
 
 
-
 
NC_009712  Mboo_1488  response regulator receiver protein  33.08 
 
 
450 aa  77  0.0000000000002  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.379239 
 
 
-
 
NC_009436  Ent638_1497  two component transcriptional regulator  30.66 
 
 
263 aa  77  0.0000000000002  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_1419  two component transcriptional regulator  32.08 
 
 
231 aa  76.6  0.0000000000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0720218  n/a   
 
 
-
 
NC_012803  Mlut_11030  response regulator with putative antiterminator output domain  34.13 
 
 
198 aa  76.6  0.0000000000002  Micrococcus luteus NCTC 2665  Bacteria  normal  0.241703  n/a   
 
 
-
 
NC_007796  Mhun_2637  putative PAS/PAC sensor protein  34.43 
 
 
461 aa  76.6  0.0000000000002  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_007963  Csal_2418  two component transcriptional regulator  38.71 
 
 
237 aa  76.6  0.0000000000002  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_3021  response regulator receiver/ANTAR domain-containing protein  33.06 
 
 
210 aa  77  0.0000000000002  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_1594  response regulator receiver protein  36.79 
 
 
548 aa  77  0.0000000000002  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_3575  response regulator receiver/ANTAR domain-containing protein  33.33 
 
 
229 aa  76.6  0.0000000000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.10936  normal  0.0183031 
 
 
-
 
NC_008705  Mkms_3067  response regulator receiver/ANTAR domain-containing protein  33.06 
 
 
210 aa  77  0.0000000000002  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_2840  response regulator receiver/ANTAR domain-containing protein  34.19 
 
 
213 aa  76.6  0.0000000000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0401204  normal 
 
 
-
 
NC_009077  Mjls_3036  response regulator receiver/ANTAR domain-containing protein  33.06 
 
 
210 aa  77  0.0000000000002  Mycobacterium sp. JLS  Bacteria  normal  0.222389  normal  0.216241 
 
 
-
 
NC_010581  Bind_1212  response regulator receiver protein  32.77 
 
 
123 aa  76.3  0.0000000000003  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_2958  response regulator receiver and ANTAR domain protein  36.61 
 
 
229 aa  75.9  0.0000000000003  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.799557  normal  0.502809 
 
 
-
 
NC_007333  Tfu_1181  response regulator receiver  29.17 
 
 
207 aa  76.6  0.0000000000003  Thermobifida fusca YX  Bacteria  normal  0.928438  n/a   
 
 
-
 
NC_007796  Mhun_3039  response regulator receiver sensor signal transduction histidine kinase  35.54 
 
 
355 aa  76.3  0.0000000000003  Methanospirillum hungatei JF-1  Archaea  normal  0.610599  normal 
 
 
-
 
NC_009523  RoseRS_4102  response regulator receiver/ANTAR domain-containing protein  28.65 
 
 
194 aa  76.3  0.0000000000003  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_0784  two component transcriptional regulator  37.19 
 
 
239 aa  76.3  0.0000000000003  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_0567  two component transcriptional regulator, winged helix family  36 
 
 
225 aa  76.3  0.0000000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.463355  n/a   
 
 
-
 
NC_009921  Franean1_2035  response regulator receiver/ANTAR domain-containing protein  34.19 
 
 
199 aa  76.3  0.0000000000003  Frankia sp. EAN1pec  Bacteria  normal  normal  0.480822 
 
 
-
 
NC_004578  PSPTO_4080  DNA-binding response regulator, LuxR family  31.69 
 
 
222 aa  75.9  0.0000000000004  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.542388  n/a   
 
 
-
 
NC_009439  Pmen_0404  response regulator receiver protein  37.29 
 
 
121 aa  75.9  0.0000000000004  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_2360  response regulator receiver protein  40.57 
 
 
523 aa  75.9  0.0000000000004  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_3511  response regulator receiver sensor signal transduction histidine kinase  39.13 
 
 
384 aa  75.9  0.0000000000004  Polaromonas sp. JS666  Bacteria  normal  normal  0.253652 
 
 
-
 
NC_011883  Ddes_2272  two component transcriptional regulator, winged helix family  34.38 
 
 
240 aa  75.9  0.0000000000004  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.543841  n/a   
 
 
-
 
NC_011886  Achl_1689  response regulator receiver and ANTAR domain protein  32.58 
 
 
201 aa  75.9  0.0000000000004  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000385738 
 
 
-
 
NC_007912  Sde_0499  response regulator receiver domain-containing protein  32.31 
 
 
473 aa  75.5  0.0000000000005  Saccharophagus degradans 2-40  Bacteria  normal  0.021061  normal 
 
 
-
 
NC_013093  Amir_5468  two component transcriptional regulator, winged helix family  34.3 
 
 
223 aa  75.5  0.0000000000005  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_67680  two-component response regulator NtrC  36.13 
 
 
476 aa  75.5  0.0000000000005  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.000437551  normal 
 
 
-
 
NC_013235  Namu_3061  response regulator receiver and ANTAR domain protein  29.02 
 
 
194 aa  75.5  0.0000000000005  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00113676  hitchhiker  0.000689676 
 
 
-
 
NC_010001  Cphy_1954  two component transcriptional regulator  31.25 
 
 
229 aa  75.1  0.0000000000006  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.000155813  n/a   
 
 
-
 
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