Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphy_1954 |
Symbol | |
ID | 5744633 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium phytofermentans ISDg |
Kingdom | Bacteria |
Replicon accession | NC_010001 |
Strand | + |
Start bp | 2411187 |
End bp | 2411876 |
Gene Length | 690 bp |
Protein Length | 229 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 641293050 |
Product | two component transcriptional regulator |
Protein accession | YP_001559061 |
Protein GI | 160880093 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.000155813 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | TTGAGTAAAA AGGTGCTTGT AGTAGATGAT GAAAAATTAA TTGTTAAGGG AATTCGCTTT TCCCTCGAAC AAGATGGCAT GGAAGTTGAT TGTGCTTATG ATGGTGAGGA AGCACTCGTT TTTGCGAAAC AAAAAGAATA TGATGTTATT CTTCTTGATG TTATGCTTCC AAGAATGAAT GGGTTTGAAG TATGCCAGCA GATACGTGAA TTTTCTAATA TGCCAGTCAT CATGTTAACG GCTAAAGGTG ATGATATGGA TAAGATTCTA GGACTAGAAT ATGGTGCAGA TGATTATATT ACTAAGCCAT TTAATATTTT AGAAGTAAAA GCTAGAATCA AAGCAATTAT GAGAAGAAAT ACAAGAAAGG CTTCAGAAGC AGAAGCATCT AAGACGATTG TCTTTGGTGA TCTAAAGATT GATAGTGAGA GTCGCCGTGT ATTTATTTCA GAAAAAGAAA TTAATCTTAC TGCGAAAGAA TTTGATGTAC TAGAATTACT AGTTCTTAAT CCGAATAAAG TATACAGCAG AGAAAATTTA TTAAACATCG TATGGGGTTA TGACTATCCA GGCGATGTCA GAACAGTGGA TGTGCATATC CGCCGCTTAA GAGAGAAGAT TGAAGAAAAT CCTAGCGAGC CTAAGTATGT ACATACTAAA TGGGGTGTTG GTTATTATTT CAAAAATTAA
|
Protein sequence | MSKKVLVVDD EKLIVKGIRF SLEQDGMEVD CAYDGEEALV FAKQKEYDVI LLDVMLPRMN GFEVCQQIRE FSNMPVIMLT AKGDDMDKIL GLEYGADDYI TKPFNILEVK ARIKAIMRRN TRKASEAEAS KTIVFGDLKI DSESRRVFIS EKEINLTAKE FDVLELLVLN PNKVYSRENL LNIVWGYDYP GDVRTVDVHI RRLREKIEEN PSEPKYVHTK WGVGYYFKN
|
| |