| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2392 |
|---|
| Symbol | |
|---|
| ID | 8420252 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 2737103 |
|---|
| End bp | 2738479 |
|---|
| Gene Length | 1377 bp |
|---|
| Protein Length | 458 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 645038993 |
|---|
| Product | two component, sigma54 specific, transcriptional regulator, Fis family |
|---|
| Protein accession | YP_003199252 |
|---|
| Protein GI | 258406510 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0321511 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCAGAAAA CCGAATCCCC CGACACTCCC CGCGTTCTGG TGGTTGATGA CGAAGAAGCC
TTGCGACTGA TGCTCCGCGC CGTTCTTGAG GAGCAGGGCT GGGAGGTGGA TGAGGCCGCC
AATGGCGAGA AAGCGTTGCA CCGGGTCACT GCCCTGGAGC CGCAGGTCAT CGTTCTCGAC
ATCCGTATGC CTGGGATCAG CGGGCTTGAG GTCCTGGGGC GGCTCCAGGC CGACTACCGC
CACATCCCTG TGATCATGCT CACCGCTTAC GGGACCGTGG ACACGGCCGT GGAGGCCATG
AAACTCGGCG CTTTCGACTT TCTGGCCAAA CCGGCGGACA ACGAGGAGAT CATCTCGGTG
CTCGACCGGG CCCTGGAATA CAGCCGTTAC CTGCGTCGGG AGGGGCCGGA GGCCCAGCCC
CCGGTCGAGG GCAGTCAATT GGTCGGCGAC AGCGCAGCCA TGCGCACCGT TTTTGAATTC
ATCCGCCAGG TCGGTCCCAG CGAGGCCACA GTGCTTATCC AGGGGGAATC AGGGACCGGC
AAAGAGCTAG TGGCCGAGGC TCTGCATGCG GCAAGCCACC GCGCTTCAGG CCCTCTGGTC
AAAGTCAACT GCGCGGCCCT GCCGGAAAAC CTCCTGGAGA GCGAACTTTT CGGTTACGCC
AAAGGCGCCT TCACCGGAGC GGCCAAGGAC AAGCCCGGCC GATTCCAACT CGCCCACAAA
GGGACCCTGT TTCTGGACGA AGTTGGGGAA ATGGCGTTGC CGCTCCAGGC AAAATTGCTC
CGAGCCCTGC AGGAACGCCT CATCGAGCCC TTGGGCGGTG TCCGGCCCCA GGAAGTCGAT
GTCCGCGTCA TTGCGGCCAC CAACCTCCAC CTGGAGCAGG CCGTCGAGGA ACACCGCTTC
CGTCAGGATC TGTATTACCG CCTCAACGTC CTTGAAGTCC GCCTGCCCCC GCTGCGGGAA
CGCAGTGAGG ACATCCCCCT TCTGGTAGGC CATCTGCTGG AAAAATTGGC CGAGAAGAAC
AAGCGTCGTC CGCCCCGGGC GACCCCGGCC TTCCTCCACG CTCTGCAGGG CTATACCTGG
CCGGGCAACG TGAGGGAGTT GGAAAATGTC CTGGAACGGG CCCTGATCCT GTCCACGGCA
AGCACTCTGA CACCTGAGGA CCTGCCGCCC CAGATCCTGG ACCACTCCCC CGCAGGTCCC
GCCGAGCCGG TCGCAGCCGG CGGCAATGGC ATCTCCCTGG ACGCTGCCGA AAAACAGGCC
ATCATCCAAG CCCTGGAAAG CAACGGCCAG CACCGGGAAC GGACGGCCCA GGCCCTGGGG
ATCAGCCGCC GAACGCTGCA GTACAAGCTG CGCAAATACG GACTGACCTC ACGCTGA
|
|---|
| Protein sequence | MQKTESPDTP RVLVVDDEEA LRLMLRAVLE EQGWEVDEAA NGEKALHRVT ALEPQVIVLD
IRMPGISGLE VLGRLQADYR HIPVIMLTAY GTVDTAVEAM KLGAFDFLAK PADNEEIISV
LDRALEYSRY LRREGPEAQP PVEGSQLVGD SAAMRTVFEF IRQVGPSEAT VLIQGESGTG
KELVAEALHA ASHRASGPLV KVNCAALPEN LLESELFGYA KGAFTGAAKD KPGRFQLAHK
GTLFLDEVGE MALPLQAKLL RALQERLIEP LGGVRPQEVD VRVIAATNLH LEQAVEEHRF
RQDLYYRLNV LEVRLPPLRE RSEDIPLLVG HLLEKLAEKN KRRPPRATPA FLHALQGYTW
PGNVRELENV LERALILSTA STLTPEDLPP QILDHSPAGP AEPVAAGGNG ISLDAAEKQA
IIQALESNGQ HRERTAQALG ISRRTLQYKL RKYGLTSR
|
|---|
| |