More than 300 homologs were found in PanDaTox collection
for query gene Ddes_0567 on replicon NC_011883
Organism: Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011883  Ddes_0567  two component transcriptional regulator, winged helix family  100 
 
 
225 aa  447  1e-125  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.463355  n/a   
 
 
-
 
NC_008751  Dvul_1911  two component transcriptional regulator  61.23 
 
 
229 aa  269  2e-71  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.258551 
 
 
-
 
NC_011769  DvMF_0882  two component transcriptional regulator, winged helix family  59.91 
 
 
230 aa  264  8e-70  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.148935 
 
 
-
 
NC_008554  Sfum_2892  two component transcriptional regulator  59.91 
 
 
227 aa  261  6.999999999999999e-69  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.0239565 
 
 
-
 
NC_008554  Sfum_0707  two component transcriptional regulator  58.22 
 
 
227 aa  260  1e-68  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.598521  normal 
 
 
-
 
NC_007519  Dde_2387  two component transcriptional regulator  57.71 
 
 
229 aa  259  2e-68  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00115026  n/a   
 
 
-
 
NC_013223  Dret_0467  two component transcriptional regulator, winged helix family  57.4 
 
 
230 aa  249  3e-65  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_2693  two component transcriptional regulator  54.46 
 
 
226 aa  245  4e-64  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.575064 
 
 
-
 
NC_002939  GSU1102  DNA-binding response regulator  52.23 
 
 
225 aa  241  7.999999999999999e-63  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2662  two component transcriptional regulator, winged helix family  51.56 
 
 
231 aa  237  8e-62  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1865  two component transcriptional regulator, winged helix family  50.22 
 
 
226 aa  237  1e-61  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1271  two component transcriptional regulator, winged helix family  54.3 
 
 
225 aa  237  1e-61  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_2952  two component transcriptional regulator, winged helix family  53.85 
 
 
225 aa  236  3e-61  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0588  two component transcriptional regulator, winged helix family  54.63 
 
 
226 aa  234  1.0000000000000001e-60  Geobacter lovleyi SZ  Bacteria  normal  0.944339  n/a   
 
 
-
 
NC_009483  Gura_1572  two component transcriptional regulator  51.79 
 
 
225 aa  233  2.0000000000000002e-60  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000784208  n/a   
 
 
-
 
NC_012918  GM21_2513  two component transcriptional regulator, winged helix family  51.57 
 
 
225 aa  231  9e-60  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_1846  two component transcriptional regulator, winged helix family  52.47 
 
 
226 aa  229  2e-59  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_0707  two component transcriptional regulator  51.08 
 
 
232 aa  228  4e-59  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_0415  two component transcriptional regulator  54.05 
 
 
231 aa  225  5.0000000000000005e-58  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.777838 
 
 
-
 
NC_007760  Adeh_4009  two component transcriptional regulator  53.39 
 
 
230 aa  223  1e-57  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  decreased coverage  0.00751412  n/a   
 
 
-
 
NC_011145  AnaeK_4125  two component transcriptional regulator, winged helix family  53.39 
 
 
230 aa  223  1e-57  Anaeromyxobacter sp. K  Bacteria  normal  0.125271  n/a   
 
 
-
 
NC_011891  A2cp1_4151  two component transcriptional regulator, winged helix family  52.49 
 
 
230 aa  221  8e-57  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1237  two component transcriptional regulator, winged helix family  48.2 
 
 
234 aa  220  1.9999999999999999e-56  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.178035  n/a   
 
 
-
 
NC_008609  Ppro_3155  two component transcriptional regulator  51.98 
 
 
228 aa  220  1.9999999999999999e-56  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1077  two component transcriptional regulator, winged helix family  48.7 
 
 
235 aa  216  2.9999999999999998e-55  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_2556  two component transcriptional regulator  51.79 
 
 
225 aa  214  8e-55  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.000000044969  n/a   
 
 
-
 
NC_013440  Hoch_6002  two component transcriptional regulator, winged helix family  50.88 
 
 
243 aa  214  9e-55  Haliangium ochraceum DSM 14365  Bacteria  normal  0.472724  normal 
 
 
-
 
NC_008576  Mmc1_1491  two component transcriptional regulator  51.53 
 
 
236 aa  213  1.9999999999999998e-54  Magnetococcus sp. MC-1  Bacteria  normal  decreased coverage  0.00391258 
 
 
-
 
NC_010424  Daud_1419  two component transcriptional regulator  50.88 
 
 
231 aa  211  7e-54  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0720218  n/a   
 
 
-
 
NC_011772  BCG9842_B5346  DNA-binding response regulator YycF  45.92 
 
 
235 aa  207  7e-53  Bacillus cereus G9842  Bacteria  hitchhiker  0.000000234523  hitchhiker  0.00000000000323141 
 
 
-
 
NC_008228  Patl_1053  two component transcriptional regulator  47.79 
 
 
229 aa  207  7e-53  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5615  DNA-binding response regulator YycF  45.92 
 
 
235 aa  207  1e-52  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A5650  DNA-binding response regulator YycF  45.92 
 
 
235 aa  207  1e-52  Bacillus cereus AH187  Bacteria  hitchhiker  0.00563499  n/a   
 
 
-
 
NC_005945  BAS5319  DNA-binding response regulator YycF  45.92 
 
 
235 aa  207  1e-52  Bacillus anthracis str. Sterne  Bacteria  normal  0.169223  n/a   
 
 
-
 
NC_005957  BT9727_5147  response regulator  45.92 
 
 
235 aa  207  1e-52  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00168683  n/a   
 
 
-
 
NC_006274  BCZK5163  response regulator  45.92 
 
 
235 aa  207  1e-52  Bacillus cereus E33L  Bacteria  hitchhiker  0.00196509  n/a   
 
 
-
 
NC_011725  BCB4264_A5589  DNA-binding response regulator YycF  45.92 
 
 
235 aa  207  1e-52  Bacillus cereus B4264  Bacteria  normal  0.0469644  n/a   
 
 
-
 
NC_011773  BCAH820_5572  DNA-binding response regulator YycF  45.92 
 
 
235 aa  207  1e-52  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.81316e-29 
 
 
-
 
NC_007530  GBAA_5715  DNA-binding response regulator YycF  45.92 
 
 
235 aa  207  1e-52  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.656882  n/a   
 
 
-
 
NC_009674  Bcer98_4006  two component transcriptional regulator  45.92 
 
 
235 aa  207  1e-52  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.010356  n/a   
 
 
-
 
NC_008346  Swol_0951  response regulator receiver protein  46.12 
 
 
239 aa  206  3e-52  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.0000000111905  n/a   
 
 
-
 
NC_007404  Tbd_0216  two component transcriptional regulator  49.34 
 
 
230 aa  205  4e-52  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.305183 
 
 
-
 
NC_012793  GWCH70_3409  two component transcriptional regulator, winged helix family  45.92 
 
 
236 aa  205  5e-52  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1997  two component transcriptional regulator  46.52 
 
 
234 aa  204  6e-52  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000000742772  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5259  two component transcriptional regulator  45.49 
 
 
235 aa  204  7e-52  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000559572  n/a   
 
 
-
 
NC_010571  Oter_2550  two component transcriptional regulator  52 
 
 
228 aa  204  1e-51  Opitutus terrae PB90-1  Bacteria  normal  normal  0.0605198 
 
 
-
 
NC_008261  CPF_0623  DNA-binding response regulator  44.64 
 
 
231 aa  203  1e-51  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000212568  n/a   
 
 
-
 
NC_013411  GYMC61_3538  two component transcriptional regulator, winged helix family  45.3 
 
 
237 aa  203  2e-51  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011899  Hore_21640  two component transcriptional regulator, winged helix family  46.88 
 
 
226 aa  202  2e-51  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000000176926  n/a   
 
 
-
 
NC_011149  SeAg_B0435  transcriptional regulator PhoB  48.23 
 
 
229 aa  202  2e-51  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1028  two component transcriptional regulator, winged helix family  51.33 
 
 
237 aa  203  2e-51  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP2534  DNA-binding response regulator YycF  44.44 
 
 
233 aa  202  3e-51  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_1021  two component transcriptional regulator  47.3 
 
 
223 aa  202  3e-51  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_1784  alkaline phosphatase synthesis transcriptional regulatory protein  44.59 
 
 
234 aa  202  4e-51  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.561076  n/a   
 
 
-
 
NC_009487  SaurJH9_1750  two component transcriptional regulator  44.59 
 
 
234 aa  202  4e-51  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_03440  putative DNA-binding response regulator PhoB  47.79 
 
 
229 aa  202  4e-51  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_3394  two component transcriptional regulator, winged helix family  47.6 
 
 
230 aa  202  4e-51  Clostridium cellulolyticum H10  Bacteria  normal  0.103692  n/a   
 
 
-
 
NC_011831  Cagg_1100  two component transcriptional regulator, winged helix family  47.79 
 
 
236 aa  201  5e-51  Chloroflexus aggregans DSM 9485  Bacteria  normal  unclonable  0.0000000182155 
 
 
-
 
NC_009457  VC0395_A0253  DNA-binding response regulator PhoB  46.22 
 
 
229 aa  202  5e-51  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008530  LGAS_0064  DNA-binding response regulator  44.64 
 
 
235 aa  202  5e-51  Lactobacillus gasseri ATCC 33323  Bacteria  normal  0.611294  normal 
 
 
-
 
NC_013385  Adeg_1011  two component transcriptional regulator, winged helix family  49.78 
 
 
231 aa  201  6e-51  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_2866  two component transcriptional regulator, winged helix family  45.41 
 
 
231 aa  201  6e-51  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_1041  two component transcriptional regulator  48.02 
 
 
229 aa  201  6e-51  Serratia proteamaculans 568  Bacteria  normal  normal  0.194422 
 
 
-
 
NC_014148  Plim_1485  response regulator receiver  47.53 
 
 
235 aa  201  6e-51  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.236897  n/a   
 
 
-
 
NC_009708  YpsIP31758_3136  phosphate regulon transcriptional regulatory protein PhoB  48.02 
 
 
229 aa  201  7e-51  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_3276  two component transcriptional regulator  48.02 
 
 
229 aa  201  7e-51  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3286  phosphate regulon transcriptional regulatory protein  48.02 
 
 
230 aa  201  8e-51  Yersinia pestis Angola  Bacteria  normal  normal  0.0413143 
 
 
-
 
CP001509  ECD_00347  DNA-binding response regulator in two-component regulatory system with PhoR (or CreC)  48.23 
 
 
229 aa  200  9.999999999999999e-51  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3210  two component transcriptional regulator PhoB, winged helix family  48.23 
 
 
229 aa  200  9.999999999999999e-51  Escherichia coli DH1  Bacteria  normal  0.146413  n/a   
 
 
-
 
NC_011353  ECH74115_0475  transcriptional regulator PhoB  48.23 
 
 
229 aa  200  9.999999999999999e-51  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E0318  transcriptional regulator PhoB  48.23 
 
 
229 aa  200  9.999999999999999e-51  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A0441  transcriptional regulator PhoB  47.79 
 
 
229 aa  200  9.999999999999999e-51  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.244741  normal 
 
 
-
 
NC_012892  B21_00351  hypothetical protein  48.23 
 
 
229 aa  200  9.999999999999999e-51  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_0427  transcriptional regulator PhoB  48.23 
 
 
229 aa  200  9.999999999999999e-51  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_0018  response regulator receiver  43.88 
 
 
233 aa  200  9.999999999999999e-51  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C0496  transcriptional regulator PhoB  47.79 
 
 
229 aa  200  9.999999999999999e-51  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_2333  two component transcriptional regulator  46.29 
 
 
232 aa  200  9.999999999999999e-51  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1600  two component transcriptional regulator  45.21 
 
 
224 aa  200  9.999999999999999e-51  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.000237714  n/a   
 
 
-
 
NC_011059  Paes_0769  two component transcriptional regulator, winged helix family  45.95 
 
 
236 aa  201  9.999999999999999e-51  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A0467  transcriptional regulator PhoB  48.23 
 
 
229 aa  200  9.999999999999999e-51  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_3234  transcriptional regulator PhoB  48.23 
 
 
229 aa  200  9.999999999999999e-51  Escherichia coli ATCC 8739  Bacteria  normal  0.456974  unclonable  0.00000000819474 
 
 
-
 
NC_010498  EcSMS35_0429  transcriptional regulator PhoB  48.23 
 
 
229 aa  200  9.999999999999999e-51  Escherichia coli SMS-3-5  Bacteria  normal  0.283039  normal 
 
 
-
 
NC_010831  Cphamn1_1694  two component transcriptional regulator, winged helix family  46.64 
 
 
236 aa  201  9.999999999999999e-51  Chlorobium phaeobacteroides BS1  Bacteria  normal  decreased coverage  0.0000906935 
 
 
-
 
NC_009487  SaurJH9_0018  two component transcriptional regulator  43.88 
 
 
233 aa  200  9.999999999999999e-51  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.70243  n/a   
 
 
-
 
NC_011094  SeSA_A0454  transcriptional regulator PhoB  47.79 
 
 
229 aa  200  9.999999999999999e-51  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_0867  transcriptional regulator PhoB  47.35 
 
 
229 aa  201  9.999999999999999e-51  Enterobacter sp. 638  Bacteria  normal  0.437737  normal 
 
 
-
 
NC_011205  SeD_A0435  transcriptional regulator PhoB  47.79 
 
 
229 aa  200  9.999999999999999e-51  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.464381  normal 
 
 
-
 
NC_009972  Haur_0804  two component transcriptional regulator  47.58 
 
 
236 aa  200  9.999999999999999e-51  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.324741  n/a   
 
 
-
 
NC_011898  Ccel_2106  two component transcriptional regulator, winged helix family  44.21 
 
 
238 aa  200  1.9999999999999998e-50  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_01026  response regulator  46.22 
 
 
229 aa  200  1.9999999999999998e-50  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008262  CPR_0609  DNA-binding response regulator  43.75 
 
 
231 aa  199  1.9999999999999998e-50  Clostridium perfringens SM101  Bacteria  hitchhiker  0.0000282114  n/a   
 
 
-
 
NC_008347  Mmar10_0483  two component transcriptional regulator  49.78 
 
 
229 aa  199  1.9999999999999998e-50  Maricaulis maris MCS10  Bacteria  normal  0.342081  normal 
 
 
-
 
NC_011312  VSAL_I2457  response regulator homolog PhoB (phosphate regulon transcriptional regulatory protein)  47.35 
 
 
230 aa  200  1.9999999999999998e-50  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0227  two component transcriptional regulator PhoB, winged helix family  50 
 
 
236 aa  200  1.9999999999999998e-50  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_1194  two component transcriptional regulator  47.62 
 
 
233 aa  199  3.9999999999999996e-50  Burkholderia ambifaria MC40-6  Bacteria  normal  0.159741  normal  0.484581 
 
 
-
 
NC_006274  BCZK1193  response regulator  44.55 
 
 
223 aa  198  3.9999999999999996e-50  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_1182  two component transcriptional regulator  47.62 
 
 
233 aa  199  3.9999999999999996e-50  Burkholderia ambifaria AMMD  Bacteria  normal  0.547738  n/a   
 
 
-
 
NC_010508  Bcenmc03_1276  two component transcriptional regulator  47.62 
 
 
233 aa  199  3.9999999999999996e-50  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008542  Bcen2424_1305  two component transcriptional regulator  47.62 
 
 
233 aa  199  3.9999999999999996e-50  Burkholderia cenocepacia HI2424  Bacteria  normal  0.920206  n/a   
 
 
-
 
NC_008576  Mmc1_1893  two component transcriptional regulator  45.61 
 
 
235 aa  199  3.9999999999999996e-50  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.203788 
 
 
-
 
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