More than 300 homologs were found in PanDaTox collection
for query gene GM21_2513 on replicon NC_012918
Organism: Geobacter sp. M21



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012918  GM21_2513  two component transcriptional regulator, winged helix family  100 
 
 
225 aa  454  1e-127  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_1846  two component transcriptional regulator, winged helix family  80.44 
 
 
226 aa  373  1e-102  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1865  two component transcriptional regulator, winged helix family  76.44 
 
 
226 aa  357  9.999999999999999e-98  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2693  two component transcriptional regulator  73.66 
 
 
226 aa  339  2e-92  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.575064 
 
 
-
 
NC_002939  GSU1102  DNA-binding response regulator  70.09 
 
 
225 aa  325  3e-88  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1572  two component transcriptional regulator  68.75 
 
 
225 aa  325  5e-88  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000784208  n/a   
 
 
-
 
NC_012918  GM21_1271  two component transcriptional regulator, winged helix family  68.75 
 
 
225 aa  313  9.999999999999999e-85  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_2952  two component transcriptional regulator, winged helix family  68.3 
 
 
225 aa  311  4.999999999999999e-84  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0588  two component transcriptional regulator, winged helix family  66.22 
 
 
226 aa  306  2.0000000000000002e-82  Geobacter lovleyi SZ  Bacteria  normal  0.944339  n/a   
 
 
-
 
NC_009483  Gura_2556  two component transcriptional regulator  69.64 
 
 
225 aa  303  1.0000000000000001e-81  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.000000044969  n/a   
 
 
-
 
NC_008609  Ppro_3155  two component transcriptional regulator  63.84 
 
 
228 aa  277  7e-74  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_4151  two component transcriptional regulator, winged helix family  57.4 
 
 
230 aa  261  8e-69  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_4125  two component transcriptional regulator, winged helix family  56.5 
 
 
230 aa  258  5.0000000000000005e-68  Anaeromyxobacter sp. K  Bacteria  normal  0.125271  n/a   
 
 
-
 
NC_007760  Adeh_4009  two component transcriptional regulator  56.5 
 
 
230 aa  258  7e-68  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  decreased coverage  0.00751412  n/a   
 
 
-
 
NC_009675  Anae109_0415  two component transcriptional regulator  56.25 
 
 
231 aa  250  1e-65  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.777838 
 
 
-
 
NC_013440  Hoch_6002  two component transcriptional regulator, winged helix family  55.8 
 
 
243 aa  240  1e-62  Haliangium ochraceum DSM 14365  Bacteria  normal  0.472724  normal 
 
 
-
 
NC_008576  Mmc1_1491  two component transcriptional regulator  54.71 
 
 
236 aa  239  2.9999999999999997e-62  Magnetococcus sp. MC-1  Bacteria  normal  decreased coverage  0.00391258 
 
 
-
 
NC_008639  Cpha266_0880  two component transcriptional regulator  53.15 
 
 
236 aa  234  9e-61  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0707  two component transcriptional regulator  51.8 
 
 
227 aa  233  1.0000000000000001e-60  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.598521  normal 
 
 
-
 
NC_010803  Clim_0772  two component transcriptional regulator, winged helix family  51.35 
 
 
233 aa  232  4.0000000000000004e-60  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2387  two component transcriptional regulator  51.8 
 
 
229 aa  231  6e-60  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00115026  n/a   
 
 
-
 
NC_011883  Ddes_0567  two component transcriptional regulator, winged helix family  51.57 
 
 
225 aa  231  9e-60  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.463355  n/a   
 
 
-
 
NC_008751  Dvul_1911  two component transcriptional regulator  49.78 
 
 
229 aa  227  9e-59  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.258551 
 
 
-
 
NC_007512  Plut_0632  two component transcriptional regulator  50.9 
 
 
236 aa  227  1e-58  Chlorobium luteolum DSM 273  Bacteria  normal  0.883969  normal 
 
 
-
 
NC_013173  Dbac_2662  two component transcriptional regulator, winged helix family  49.78 
 
 
231 aa  226  2e-58  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2892  two component transcriptional regulator  50.91 
 
 
227 aa  226  2e-58  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.0239565 
 
 
-
 
NC_011769  DvMF_0882  two component transcriptional regulator, winged helix family  48.44 
 
 
230 aa  224  9e-58  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.148935 
 
 
-
 
NC_010571  Oter_2550  two component transcriptional regulator  51.82 
 
 
228 aa  223  1e-57  Opitutus terrae PB90-1  Bacteria  normal  normal  0.0605198 
 
 
-
 
NC_011060  Ppha_1701  two component transcriptional regulator, winged helix family  50 
 
 
236 aa  222  4e-57  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_0769  two component transcriptional regulator, winged helix family  50.45 
 
 
236 aa  222  4e-57  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_010831  Cphamn1_1694  two component transcriptional regulator, winged helix family  48.65 
 
 
236 aa  219  3e-56  Chlorobium phaeobacteroides BS1  Bacteria  normal  decreased coverage  0.0000906935 
 
 
-
 
NC_013223  Dret_0467  two component transcriptional regulator, winged helix family  49.55 
 
 
230 aa  219  3.9999999999999997e-56  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_03750  PhoP-like protein  49.34 
 
 
226 aa  216  2e-55  Micrococcus luteus NCTC 2665  Bacteria  normal  0.181369  n/a   
 
 
-
 
NC_007514  Cag_0435  two component transcriptional regulator  48.2 
 
 
253 aa  215  4e-55  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.583358  n/a   
 
 
-
 
NC_009253  Dred_0707  two component transcriptional regulator  48.7 
 
 
232 aa  214  9.999999999999999e-55  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_0700  two component transcriptional regulator, winged helix family  48.68 
 
 
226 aa  213  1.9999999999999998e-54  Thermomonospora curvata DSM 43183  Bacteria  normal  0.768939  n/a   
 
 
-
 
NC_013159  Svir_02690  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  49.35 
 
 
229 aa  213  1.9999999999999998e-54  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_011658  BCAH187_A5650  DNA-binding response regulator YycF  48.91 
 
 
235 aa  212  3.9999999999999995e-54  Bacillus cereus AH187  Bacteria  hitchhiker  0.00563499  n/a   
 
 
-
 
NC_003909  BCE_5615  DNA-binding response regulator YycF  48.91 
 
 
235 aa  212  3.9999999999999995e-54  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5319  DNA-binding response regulator YycF  48.91 
 
 
235 aa  212  3.9999999999999995e-54  Bacillus anthracis str. Sterne  Bacteria  normal  0.169223  n/a   
 
 
-
 
NC_005957  BT9727_5147  response regulator  48.91 
 
 
235 aa  212  3.9999999999999995e-54  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00168683  n/a   
 
 
-
 
NC_006274  BCZK5163  response regulator  48.91 
 
 
235 aa  212  3.9999999999999995e-54  Bacillus cereus E33L  Bacteria  hitchhiker  0.00196509  n/a   
 
 
-
 
NC_007530  GBAA_5715  DNA-binding response regulator YycF  48.91 
 
 
235 aa  212  3.9999999999999995e-54  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.656882  n/a   
 
 
-
 
NC_011773  BCAH820_5572  DNA-binding response regulator YycF  48.91 
 
 
235 aa  212  3.9999999999999995e-54  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.81316e-29 
 
 
-
 
NC_009338  Mflv_0082  two component transcriptional regulator  49.13 
 
 
228 aa  211  4.9999999999999996e-54  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_0831  two component transcriptional regulator  49.13 
 
 
228 aa  211  4.9999999999999996e-54  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.310785  normal 
 
 
-
 
NC_009674  Bcer98_4006  two component transcriptional regulator  48.91 
 
 
235 aa  211  5.999999999999999e-54  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.010356  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5259  two component transcriptional regulator  48.91 
 
 
235 aa  211  5.999999999999999e-54  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000559572  n/a   
 
 
-
 
NC_011725  BCB4264_A5589  DNA-binding response regulator YycF  48.91 
 
 
235 aa  211  7.999999999999999e-54  Bacillus cereus B4264  Bacteria  normal  0.0469644  n/a   
 
 
-
 
NC_011830  Dhaf_1237  two component transcriptional regulator, winged helix family  46.05 
 
 
234 aa  211  1e-53  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.178035  n/a   
 
 
-
 
NC_009565  TBFG_10499  two component system sensor transduction protein regX3  49.34 
 
 
227 aa  210  1e-53  Mycobacterium tuberculosis F11  Bacteria  decreased coverage  2.46064e-66  normal 
 
 
-
 
NC_013216  Dtox_1077  two component transcriptional regulator, winged helix family  46.78 
 
 
235 aa  211  1e-53  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_4929  two component transcriptional regulator, winged helix family  50.22 
 
 
226 aa  211  1e-53  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B5346  DNA-binding response regulator YycF  48.47 
 
 
235 aa  210  1e-53  Bacillus cereus G9842  Bacteria  hitchhiker  0.000000234523  hitchhiker  0.00000000000323141 
 
 
-
 
NC_013441  Gbro_0997  response regulator receiver  49.78 
 
 
228 aa  211  1e-53  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4322  two component transcriptional regulator, winged helix family  49.12 
 
 
231 aa  210  2e-53  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_1893  two component transcriptional regulator  46.43 
 
 
235 aa  209  2e-53  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.203788 
 
 
-
 
NC_013093  Amir_6749  two component transcriptional regulator, winged helix family  48.25 
 
 
226 aa  208  4e-53  Actinosynnema mirum DSM 43827  Bacteria  normal  0.290774  n/a   
 
 
-
 
NC_008699  Noca_4046  response regulator receiver  46.29 
 
 
225 aa  208  6e-53  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2910  response regulator receiver  48.68 
 
 
230 aa  208  7e-53  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0499  winged helix family two component transcriptional regulator  47.37 
 
 
229 aa  207  1e-52  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_0661  two component transcriptional regulator  48.7 
 
 
228 aa  207  1e-52  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0674  two component transcriptional regulator  48.7 
 
 
228 aa  207  1e-52  Mycobacterium sp. KMS  Bacteria  normal  normal  0.850641 
 
 
-
 
NC_009077  Mjls_0654  two component transcriptional regulator  48.7 
 
 
228 aa  207  1e-52  Mycobacterium sp. JLS  Bacteria  normal  normal  0.682961 
 
 
-
 
NC_013169  Ksed_03700  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  46.49 
 
 
226 aa  206  2e-52  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.132847 
 
 
-
 
NC_013205  Aaci_1728  two component transcriptional regulator, winged helix family  49.34 
 
 
233 aa  206  2e-52  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_6145  two component transcriptional regulator  48.67 
 
 
228 aa  204  6e-52  Frankia sp. EAN1pec  Bacteria  normal  normal  0.788201 
 
 
-
 
NC_010320  Teth514_1997  two component transcriptional regulator  48.67 
 
 
234 aa  203  1e-51  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000000742772  n/a   
 
 
-
 
NC_013757  Gobs_4602  two component transcriptional regulator, winged helix family  46.49 
 
 
226 aa  203  2e-51  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1419  two component transcriptional regulator  47.35 
 
 
231 aa  203  2e-51  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0720218  n/a   
 
 
-
 
NC_008541  Arth_0724  two component transcriptional regulator  46.49 
 
 
226 aa  203  2e-51  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_21640  two component transcriptional regulator, winged helix family  46.67 
 
 
226 aa  202  2e-51  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000000176926  n/a   
 
 
-
 
NC_013172  Bfae_09290  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  47.6 
 
 
229 aa  202  3e-51  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_2083  two component transcriptional regulator, winged helix family  45.76 
 
 
237 aa  202  3e-51  Jonesia denitrificans DSM 20603  Bacteria  normal  0.873655  normal 
 
 
-
 
NC_010002  Daci_4913  two component transcriptional regulator  47.98 
 
 
231 aa  202  3e-51  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.121364 
 
 
-
 
NC_010655  Amuc_1110  two component transcriptional regulator, winged helix family  45.74 
 
 
234 aa  202  3e-51  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_0088  two component transcriptional regulator  47.14 
 
 
228 aa  202  4e-51  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0961  response regulator receiver protein  46.49 
 
 
229 aa  202  4e-51  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_0404  two component transcriptional regulator  47.6 
 
 
227 aa  201  6e-51  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00316128 
 
 
-
 
NC_009513  Lreu_0019  two component transcriptional regulator  47.39 
 
 
235 aa  201  7e-51  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1897  two component transcriptional regulator  50.44 
 
 
227 aa  201  8e-51  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.151466  n/a   
 
 
-
 
NC_012791  Vapar_2316  two component transcriptional regulator PhoB, winged helix family  47.51 
 
 
230 aa  201  9e-51  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_8215  two component transcriptional regulator, winged helix family  48.03 
 
 
226 aa  200  9.999999999999999e-51  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_2367  two component transcriptional regulator  46.36 
 
 
235 aa  201  9.999999999999999e-51  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_0850  two component transcriptional regulator, winged helix family  46.05 
 
 
226 aa  200  9.999999999999999e-51  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_014158  Tpau_0654  two component transcriptional regulator, winged helix family  47.84 
 
 
229 aa  200  1.9999999999999998e-50  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.200991  n/a   
 
 
-
 
NC_008347  Mmar10_0483  two component transcriptional regulator  49.78 
 
 
229 aa  200  1.9999999999999998e-50  Maricaulis maris MCS10  Bacteria  normal  0.342081  normal 
 
 
-
 
NC_007948  Bpro_2257  two component transcriptional regulator  46.36 
 
 
243 aa  199  3e-50  Polaromonas sp. JS666  Bacteria  normal  0.512842  normal  0.410356 
 
 
-
 
NC_008752  Aave_2631  two component transcriptional regulator  47.73 
 
 
235 aa  199  3.9999999999999996e-50  Acidovorax citrulli AAC00-1  Bacteria  normal  0.552533  normal  0.0653315 
 
 
-
 
NC_010730  SYO3AOP1_0329  two component transcriptional regulator, winged helix family  44.69 
 
 
231 aa  198  5e-50  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_1491  two component transcriptional regulator PhoB, winged helix family  45.91 
 
 
235 aa  198  6e-50  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_2201  two component transcriptional regulator  46.36 
 
 
242 aa  198  6e-50  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.153982  normal 
 
 
-
 
NC_013411  GYMC61_3538  two component transcriptional regulator, winged helix family  46.15 
 
 
237 aa  198  7e-50  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013947  Snas_0580  two component transcriptional regulator, winged helix family  44.78 
 
 
226 aa  198  7e-50  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_1100  two component transcriptional regulator, winged helix family  44.98 
 
 
236 aa  198  7e-50  Chloroflexus aggregans DSM 9485  Bacteria  normal  unclonable  0.0000000182155 
 
 
-
 
NC_010718  Nther_0984  two component transcriptional regulator, winged helix family  43.44 
 
 
246 aa  197  1.0000000000000001e-49  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.0723779 
 
 
-
 
NC_011830  Dhaf_3739  two component transcriptional regulator, winged helix family  43.61 
 
 
230 aa  197  1.0000000000000001e-49  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.0000000000466515  n/a   
 
 
-
 
NC_010483  TRQ2_1174  two component transcriptional regulator  45.26 
 
 
239 aa  197  1.0000000000000001e-49  Thermotoga sp. RQ2  Bacteria  normal  0.0181894  n/a   
 
 
-
 
NC_008346  Swol_0951  response regulator receiver protein  45.37 
 
 
239 aa  197  1.0000000000000001e-49  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.0000000111905  n/a   
 
 
-
 
NC_009486  Tpet_1136  two component transcriptional regulator  45.26 
 
 
239 aa  197  1.0000000000000001e-49  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000000652217  n/a   
 
 
-
 
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