More than 300 homologs were found in PanDaTox collection
for query gene Gbem_1865 on replicon NC_011146
Organism: Geobacter bemidjiensis Bem



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011146  Gbem_1865  two component transcriptional regulator, winged helix family  100 
 
 
226 aa  457  9.999999999999999e-129  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1846  two component transcriptional regulator, winged helix family  76.11 
 
 
226 aa  357  6e-98  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2513  two component transcriptional regulator, winged helix family  76.44 
 
 
225 aa  357  9.999999999999999e-98  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_002939  GSU1102  DNA-binding response regulator  72.32 
 
 
225 aa  342  2.9999999999999997e-93  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2693  two component transcriptional regulator  72.32 
 
 
226 aa  337  9.999999999999999e-92  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.575064 
 
 
-
 
NC_009483  Gura_1572  two component transcriptional regulator  70.98 
 
 
225 aa  337  9.999999999999999e-92  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000784208  n/a   
 
 
-
 
NC_012918  GM21_1271  two component transcriptional regulator, winged helix family  67.86 
 
 
225 aa  316  2e-85  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009483  Gura_2556  two component transcriptional regulator  71.43 
 
 
225 aa  315  4e-85  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.000000044969  n/a   
 
 
-
 
NC_011146  Gbem_2952  two component transcriptional regulator, winged helix family  66.96 
 
 
225 aa  314  7e-85  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0588  two component transcriptional regulator, winged helix family  64 
 
 
226 aa  299  2e-80  Geobacter lovleyi SZ  Bacteria  normal  0.944339  n/a   
 
 
-
 
NC_008609  Ppro_3155  two component transcriptional regulator  61.61 
 
 
228 aa  281  7.000000000000001e-75  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_4151  two component transcriptional regulator, winged helix family  55.16 
 
 
230 aa  256  2e-67  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_4009  two component transcriptional regulator  54.26 
 
 
230 aa  254  9e-67  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  decreased coverage  0.00751412  n/a   
 
 
-
 
NC_011145  AnaeK_4125  two component transcriptional regulator, winged helix family  54.26 
 
 
230 aa  253  1.0000000000000001e-66  Anaeromyxobacter sp. K  Bacteria  normal  0.125271  n/a   
 
 
-
 
NC_013440  Hoch_6002  two component transcriptional regulator, winged helix family  53.12 
 
 
243 aa  247  1e-64  Haliangium ochraceum DSM 14365  Bacteria  normal  0.472724  normal 
 
 
-
 
NC_009675  Anae109_0415  two component transcriptional regulator  53.57 
 
 
231 aa  245  3e-64  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.777838 
 
 
-
 
NC_008751  Dvul_1911  two component transcriptional regulator  52.89 
 
 
229 aa  244  6e-64  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.258551 
 
 
-
 
NC_007519  Dde_2387  two component transcriptional regulator  53.15 
 
 
229 aa  244  6.999999999999999e-64  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00115026  n/a   
 
 
-
 
NC_008639  Cpha266_0880  two component transcriptional regulator  52.7 
 
 
236 aa  242  3e-63  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_1491  two component transcriptional regulator  52.68 
 
 
236 aa  242  3.9999999999999997e-63  Magnetococcus sp. MC-1  Bacteria  normal  decreased coverage  0.00391258 
 
 
-
 
NC_011883  Ddes_0567  two component transcriptional regulator, winged helix family  50.22 
 
 
225 aa  237  1e-61  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.463355  n/a   
 
 
-
 
NC_013173  Dbac_2662  two component transcriptional regulator, winged helix family  51.12 
 
 
231 aa  236  3e-61  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_0769  two component transcriptional regulator, winged helix family  50.67 
 
 
236 aa  235  4e-61  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_0707  two component transcriptional regulator  49.1 
 
 
227 aa  234  9e-61  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.598521  normal 
 
 
-
 
NC_010803  Clim_0772  two component transcriptional regulator, winged helix family  50.45 
 
 
233 aa  234  1.0000000000000001e-60  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0882  two component transcriptional regulator, winged helix family  49.12 
 
 
230 aa  229  2e-59  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.148935 
 
 
-
 
NC_008554  Sfum_2892  two component transcriptional regulator  50.45 
 
 
227 aa  230  2e-59  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.0239565 
 
 
-
 
NC_013223  Dret_0467  two component transcriptional regulator, winged helix family  48.66 
 
 
230 aa  229  3e-59  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_007512  Plut_0632  two component transcriptional regulator  49.55 
 
 
236 aa  229  3e-59  Chlorobium luteolum DSM 273  Bacteria  normal  0.883969  normal 
 
 
-
 
NC_010831  Cphamn1_1694  two component transcriptional regulator, winged helix family  50 
 
 
236 aa  228  8e-59  Chlorobium phaeobacteroides BS1  Bacteria  normal  decreased coverage  0.0000906935 
 
 
-
 
NC_011060  Ppha_1701  two component transcriptional regulator, winged helix family  48.65 
 
 
236 aa  223  2e-57  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_007514  Cag_0435  two component transcriptional regulator  47.32 
 
 
253 aa  221  4.9999999999999996e-57  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.583358  n/a   
 
 
-
 
NC_012803  Mlut_03750  PhoP-like protein  49.12 
 
 
226 aa  221  6e-57  Micrococcus luteus NCTC 2665  Bacteria  normal  0.181369  n/a   
 
 
-
 
NC_013441  Gbro_0997  response regulator receiver  49.35 
 
 
228 aa  218  7e-56  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_1893  two component transcriptional regulator  47.32 
 
 
235 aa  217  1e-55  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.203788 
 
 
-
 
NC_014165  Tbis_0499  winged helix family two component transcriptional regulator  48.03 
 
 
229 aa  216  2e-55  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_0700  two component transcriptional regulator, winged helix family  48.47 
 
 
226 aa  214  7e-55  Thermomonospora curvata DSM 43183  Bacteria  normal  0.768939  n/a   
 
 
-
 
NC_009338  Mflv_0082  two component transcriptional regulator  48.92 
 
 
228 aa  214  9.999999999999999e-55  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_2550  two component transcriptional regulator  48.88 
 
 
228 aa  214  9.999999999999999e-55  Opitutus terrae PB90-1  Bacteria  normal  normal  0.0605198 
 
 
-
 
NC_007333  Tfu_2910  response regulator receiver  47.81 
 
 
230 aa  213  9.999999999999999e-55  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_10499  two component system sensor transduction protein regX3  47.83 
 
 
227 aa  212  3.9999999999999995e-54  Mycobacterium tuberculosis F11  Bacteria  decreased coverage  2.46064e-66  normal 
 
 
-
 
NC_011899  Hore_21640  two component transcriptional regulator, winged helix family  48 
 
 
226 aa  212  3.9999999999999995e-54  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000000176926  n/a   
 
 
-
 
NC_008146  Mmcs_0661  two component transcriptional regulator  48.05 
 
 
228 aa  211  4.9999999999999996e-54  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_0654  two component transcriptional regulator  48.05 
 
 
228 aa  211  4.9999999999999996e-54  Mycobacterium sp. JLS  Bacteria  normal  normal  0.682961 
 
 
-
 
NC_008705  Mkms_0674  two component transcriptional regulator  48.05 
 
 
228 aa  211  4.9999999999999996e-54  Mycobacterium sp. KMS  Bacteria  normal  normal  0.850641 
 
 
-
 
NC_008726  Mvan_0831  two component transcriptional regulator  48.05 
 
 
228 aa  212  4.9999999999999996e-54  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.310785  normal 
 
 
-
 
NC_014210  Ndas_4322  two component transcriptional regulator, winged helix family  48.05 
 
 
231 aa  211  7e-54  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_4913  two component transcriptional regulator  46.46 
 
 
231 aa  211  7e-54  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.121364 
 
 
-
 
NC_011830  Dhaf_1237  two component transcriptional regulator, winged helix family  44.35 
 
 
234 aa  211  7.999999999999999e-54  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.178035  n/a   
 
 
-
 
NC_012791  Vapar_2316  two component transcriptional regulator PhoB, winged helix family  46.19 
 
 
230 aa  211  9e-54  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_4929  two component transcriptional regulator, winged helix family  48.68 
 
 
226 aa  211  1e-53  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_6749  two component transcriptional regulator, winged helix family  49.12 
 
 
226 aa  210  1e-53  Actinosynnema mirum DSM 43827  Bacteria  normal  0.290774  n/a   
 
 
-
 
NC_013159  Svir_02690  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  48.05 
 
 
229 aa  209  2e-53  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_1077  two component transcriptional regulator, winged helix family  44.4 
 
 
235 aa  209  2e-53  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A2231  two component transcriptional regulator  46.02 
 
 
234 aa  209  3e-53  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_6145  two component transcriptional regulator  48.44 
 
 
228 aa  209  3e-53  Frankia sp. EAN1pec  Bacteria  normal  normal  0.788201 
 
 
-
 
NC_014158  Tpau_0654  two component transcriptional regulator, winged helix family  48.28 
 
 
229 aa  209  3e-53  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.200991  n/a   
 
 
-
 
NC_013169  Ksed_03700  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  46.49 
 
 
226 aa  209  3e-53  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.132847 
 
 
-
 
NC_009487  SaurJH9_1750  two component transcriptional regulator  48.47 
 
 
234 aa  208  6e-53  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_1784  alkaline phosphatase synthesis transcriptional regulatory protein  48.47 
 
 
234 aa  208  6e-53  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.561076  n/a   
 
 
-
 
NC_010424  Daud_1419  two component transcriptional regulator  45.58 
 
 
231 aa  207  8e-53  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0720218  n/a   
 
 
-
 
NC_008781  Pnap_2201  two component transcriptional regulator  45.91 
 
 
242 aa  207  8e-53  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.153982  normal 
 
 
-
 
NC_007908  Rfer_0578  two component transcriptional regulator  45.98 
 
 
240 aa  207  1e-52  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_0724  two component transcriptional regulator  46.05 
 
 
226 aa  207  1e-52  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_2367  two component transcriptional regulator  44.39 
 
 
235 aa  207  1e-52  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0961  response regulator receiver protein  45.61 
 
 
229 aa  206  2e-52  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_1997  two component transcriptional regulator  50 
 
 
234 aa  206  2e-52  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000000742772  n/a   
 
 
-
 
NC_008752  Aave_2631  two component transcriptional regulator  45.74 
 
 
235 aa  206  2e-52  Acidovorax citrulli AAC00-1  Bacteria  normal  0.552533  normal  0.0653315 
 
 
-
 
NC_013174  Jden_2083  two component transcriptional regulator, winged helix family  46.19 
 
 
237 aa  206  3e-52  Jonesia denitrificans DSM 20603  Bacteria  normal  0.873655  normal 
 
 
-
 
NC_010730  SYO3AOP1_0329  two component transcriptional regulator, winged helix family  44.3 
 
 
231 aa  206  3e-52  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0951  response regulator receiver protein  46.26 
 
 
239 aa  206  3e-52  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.0000000111905  n/a   
 
 
-
 
NC_011831  Cagg_1100  two component transcriptional regulator, winged helix family  44.98 
 
 
236 aa  205  4e-52  Chloroflexus aggregans DSM 9485  Bacteria  normal  unclonable  0.0000000182155 
 
 
-
 
NC_007520  Tcr_0541  two component transcriptional regulator  44.25 
 
 
230 aa  205  4e-52  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1394  two component transcriptional regulator  47.35 
 
 
236 aa  205  4e-52  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.00000024965  n/a   
 
 
-
 
NC_010508  Bcenmc03_1276  two component transcriptional regulator  44.3 
 
 
233 aa  205  5e-52  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_1194  two component transcriptional regulator  44.3 
 
 
233 aa  205  5e-52  Burkholderia ambifaria MC40-6  Bacteria  normal  0.159741  normal  0.484581 
 
 
-
 
NC_008060  Bcen_0824  two component transcriptional regulator  44.3 
 
 
233 aa  205  5e-52  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_1182  two component transcriptional regulator  44.3 
 
 
233 aa  205  5e-52  Burkholderia ambifaria AMMD  Bacteria  normal  0.547738  n/a   
 
 
-
 
NC_008542  Bcen2424_1305  two component transcriptional regulator  44.3 
 
 
233 aa  205  5e-52  Burkholderia cenocepacia HI2424  Bacteria  normal  0.920206  n/a   
 
 
-
 
NC_009253  Dred_0707  two component transcriptional regulator  44.78 
 
 
232 aa  204  1e-51  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_1288  two component transcriptional regulator  44.25 
 
 
238 aa  204  1e-51  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_4050  two component transcriptional regulator, winged helix family  47.35 
 
 
227 aa  204  1e-51  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00552008  n/a   
 
 
-
 
NC_007948  Bpro_2257  two component transcriptional regulator  45 
 
 
243 aa  204  1e-51  Polaromonas sp. JS666  Bacteria  normal  0.512842  normal  0.410356 
 
 
-
 
NC_011992  Dtpsy_1491  two component transcriptional regulator PhoB, winged helix family  43.95 
 
 
235 aa  204  1e-51  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A0572  phosphate regulon transcriptional regulatory protein PhoB  44.3 
 
 
233 aa  203  2e-51  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_1490  phosphate regulon transcriptional regulatory protein PhoB  44.3 
 
 
233 aa  203  2e-51  Burkholderia pseudomallei 668  Bacteria  normal  0.72233  n/a   
 
 
-
 
NC_006348  BMA0785  DNA-binding response regulator PhoB  44.3 
 
 
233 aa  203  2e-51  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_1623  phosphate regulon transcriptional regulatory protein PhoB  44.3 
 
 
233 aa  203  2e-51  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2768  phosphate regulon transcriptional regulatory protein PhoB  44.3 
 
 
233 aa  203  2e-51  Burkholderia thailandensis E264  Bacteria  normal  0.368066  n/a   
 
 
-
 
NC_010424  Daud_1897  two component transcriptional regulator  49.12 
 
 
227 aa  203  2e-51  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.151466  n/a   
 
 
-
 
NC_010084  Bmul_2015  two component transcriptional regulator  45.18 
 
 
233 aa  203  2e-51  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.582968  normal 
 
 
-
 
NC_009076  BURPS1106A_1520  phosphate regulon transcriptional regulatory protein PhoB  44.3 
 
 
233 aa  203  2e-51  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1296  phosphate regulon transcriptional regulatory protein PhoB  44.3 
 
 
233 aa  203  2e-51  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_0579  phosphate regulon transcriptional regulatory protein PhoB  44.3 
 
 
233 aa  203  2e-51  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0503015  n/a   
 
 
-
 
NC_008578  Acel_0088  two component transcriptional regulator  46.46 
 
 
228 aa  203  2e-51  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_0489  two component transcriptional regulator  48.02 
 
 
228 aa  202  3e-51  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_4602  two component transcriptional regulator, winged helix family  45.85 
 
 
226 aa  202  3e-51  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_8215  two component transcriptional regulator, winged helix family  47.16 
 
 
226 aa  202  4e-51  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_5259  two component transcriptional regulator  46.72 
 
 
235 aa  202  4e-51  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000559572  n/a   
 
 
-
 
NC_013411  GYMC61_0785  two component transcriptional regulator, winged helix family  47.16 
 
 
235 aa  202  5e-51  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
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