| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1194 |
|---|
| Symbol | |
|---|
| ID | 6178360 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 1319325 |
|---|
| End bp | 1320026 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641680950 |
|---|
| Product | two component transcriptional regulator |
|---|
| Protein accession | YP_001807901 |
|---|
| Protein GI | 172060249 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | [TIGR02154] phosphate regulon transcriptional regulatory protein PhoB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.159741 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.484581 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAGCA ACATTCTCGT CGTTGAAGAT GAGCCCGCGA TTTCCGAACT GATCTCGGTG
AATCTCCAGC ATGCCGGTCA CTGCCCGATC CGCGCGTACA ACGCGGAGCA GGCGCAGAAC
CTGATCAGCG ATGTGCTGCC CGATCTCGTG CTGCTCGACT GGATGCTGCC GGGCAAGTCC
GGCATCGCGT TCGCGCGCGA CCTGCGCAAC AACGAACGGA CCAAGCACAT CCCGATCATC
ATGCTGACCG CGCGTGGCGA CGAGCAGGAC AAGGTGCTCG GCCTCGAAAT CGGTGCGGAC
GACTACGTGA CCAAGCCGTT CTCGCCGAAG GAACTGATGG CGCGCATCAA GGCCGTGCTG
CGCCGCCGCG CGCCGCAGCT GACCGAGGAC GTCGTGTCGA TCAACGGGCT GCGCCTCGAT
CCGGCCACGC ATCGGGTCGC CGCGCACGGC GACGGCAGCG AGATCAAGCT CGATCTCGGC
CCGACCGAAT TCCGCCTGCT GCATTTCTTC ATGACGCATC CGGAGCGCGT GCACAGCCGC
ACGCAACTGC TCGACCAGGT GTGGGGCGAT CACGTGTTCG TCGAGGAGCG CACCGTCGAC
GTGCACATCA AACGATTGCG CGCGGCCTTG AAACCGGCCG GCTGCGATGC GATGATCGAG
ACCGTGCGCG GCAGCGGCTA CCGGCTCGCC AAGCACGCGT AA
|
|---|
| Protein sequence | MPSNILVVED EPAISELISV NLQHAGHCPI RAYNAEQAQN LISDVLPDLV LLDWMLPGKS
GIAFARDLRN NERTKHIPII MLTARGDEQD KVLGLEIGAD DYVTKPFSPK ELMARIKAVL
RRRAPQLTED VVSINGLRLD PATHRVAAHG DGSEIKLDLG PTEFRLLHFF MTHPERVHSR
TQLLDQVWGD HVFVEERTVD VHIKRLRAAL KPAGCDAMIE TVRGSGYRLA KHA
|
|---|
| |