More than 300 homologs were found in PanDaTox collection
for query gene GM21_1271 on replicon NC_012918
Organism: Geobacter sp. M21



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012918  GM21_1271  two component transcriptional regulator, winged helix family  100 
 
 
225 aa  449  1e-125  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_2952  two component transcriptional regulator, winged helix family  97.78 
 
 
225 aa  441  1e-123  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2693  two component transcriptional regulator  75.22 
 
 
226 aa  346  2e-94  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.575064 
 
 
-
 
NC_009483  Gura_1572  two component transcriptional regulator  74.22 
 
 
225 aa  345  4e-94  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000784208  n/a   
 
 
-
 
NC_002939  GSU1102  DNA-binding response regulator  75.56 
 
 
225 aa  342  2e-93  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1846  two component transcriptional regulator, winged helix family  69.64 
 
 
226 aa  320  9.999999999999999e-87  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2556  two component transcriptional regulator  72.44 
 
 
225 aa  316  2e-85  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.000000044969  n/a   
 
 
-
 
NC_011146  Gbem_1865  two component transcriptional regulator, winged helix family  67.86 
 
 
226 aa  316  2e-85  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2513  two component transcriptional regulator, winged helix family  68.75 
 
 
225 aa  313  9.999999999999999e-85  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010814  Glov_0588  two component transcriptional regulator, winged helix family  68.58 
 
 
226 aa  310  1e-83  Geobacter lovleyi SZ  Bacteria  normal  0.944339  n/a   
 
 
-
 
NC_008609  Ppro_3155  two component transcriptional regulator  64.29 
 
 
228 aa  283  2.0000000000000002e-75  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2662  two component transcriptional regulator, winged helix family  53.36 
 
 
231 aa  237  8e-62  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_0567  two component transcriptional regulator, winged helix family  54.3 
 
 
225 aa  237  1e-61  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.463355  n/a   
 
 
-
 
NC_013440  Hoch_6002  two component transcriptional regulator, winged helix family  54.91 
 
 
243 aa  236  2e-61  Haliangium ochraceum DSM 14365  Bacteria  normal  0.472724  normal 
 
 
-
 
NC_011891  A2cp1_4151  two component transcriptional regulator, winged helix family  54.71 
 
 
230 aa  235  3e-61  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_4125  two component transcriptional regulator, winged helix family  54.71 
 
 
230 aa  235  5.0000000000000005e-61  Anaeromyxobacter sp. K  Bacteria  normal  0.125271  n/a   
 
 
-
 
NC_008554  Sfum_0707  two component transcriptional regulator  52.91 
 
 
227 aa  234  6e-61  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.598521  normal 
 
 
-
 
NC_007760  Adeh_4009  two component transcriptional regulator  53.81 
 
 
230 aa  234  1.0000000000000001e-60  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  decreased coverage  0.00751412  n/a   
 
 
-
 
NC_008576  Mmc1_1491  two component transcriptional regulator  53.54 
 
 
236 aa  233  1.0000000000000001e-60  Magnetococcus sp. MC-1  Bacteria  normal  decreased coverage  0.00391258 
 
 
-
 
NC_008639  Cpha266_0880  two component transcriptional regulator  50.88 
 
 
236 aa  231  8.000000000000001e-60  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_0415  two component transcriptional regulator  54.02 
 
 
231 aa  231  1e-59  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.777838 
 
 
-
 
NC_007519  Dde_2387  two component transcriptional regulator  53.12 
 
 
229 aa  229  2e-59  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00115026  n/a   
 
 
-
 
NC_011769  DvMF_0882  two component transcriptional regulator, winged helix family  52.89 
 
 
230 aa  229  3e-59  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.148935 
 
 
-
 
NC_008751  Dvul_1911  two component transcriptional regulator  53.12 
 
 
229 aa  229  3e-59  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.258551 
 
 
-
 
NC_013216  Dtox_1077  two component transcriptional regulator, winged helix family  48.29 
 
 
235 aa  227  1e-58  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_007512  Plut_0632  two component transcriptional regulator  50.44 
 
 
236 aa  226  2e-58  Chlorobium luteolum DSM 273  Bacteria  normal  0.883969  normal 
 
 
-
 
NC_010803  Clim_0772  two component transcriptional regulator, winged helix family  50.67 
 
 
233 aa  225  5.0000000000000005e-58  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_0769  two component transcriptional regulator, winged helix family  51.79 
 
 
236 aa  224  7e-58  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_010831  Cphamn1_1694  two component transcriptional regulator, winged helix family  50.44 
 
 
236 aa  224  1e-57  Chlorobium phaeobacteroides BS1  Bacteria  normal  decreased coverage  0.0000906935 
 
 
-
 
NC_010424  Daud_1419  two component transcriptional regulator  51.75 
 
 
231 aa  222  3e-57  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0720218  n/a   
 
 
-
 
NC_007514  Cag_0435  two component transcriptional regulator  51.34 
 
 
253 aa  221  7e-57  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.583358  n/a   
 
 
-
 
NC_011060  Ppha_1701  two component transcriptional regulator, winged helix family  49.56 
 
 
236 aa  219  1.9999999999999999e-56  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2892  two component transcriptional regulator  51.11 
 
 
227 aa  220  1.9999999999999999e-56  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.0239565 
 
 
-
 
NC_009921  Franean1_6145  two component transcriptional regulator  53.1 
 
 
228 aa  219  3e-56  Frankia sp. EAN1pec  Bacteria  normal  normal  0.788201 
 
 
-
 
NC_012803  Mlut_03750  PhoP-like protein  50.88 
 
 
226 aa  218  7.999999999999999e-56  Micrococcus luteus NCTC 2665  Bacteria  normal  0.181369  n/a   
 
 
-
 
NC_011830  Dhaf_1237  two component transcriptional regulator, winged helix family  47.32 
 
 
234 aa  216  2e-55  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.178035  n/a   
 
 
-
 
NC_009253  Dred_0707  two component transcriptional regulator  46.75 
 
 
232 aa  214  5.9999999999999996e-55  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_2201  two component transcriptional regulator  46.85 
 
 
242 aa  214  9e-55  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.153982  normal 
 
 
-
 
NC_013441  Gbro_0997  response regulator receiver  50 
 
 
228 aa  213  9.999999999999999e-55  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0070  two component transcriptional regulator  49.78 
 
 
229 aa  213  1.9999999999999998e-54  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.834843 
 
 
-
 
NC_013223  Dret_0467  two component transcriptional regulator, winged helix family  50.23 
 
 
230 aa  213  1.9999999999999998e-54  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_0661  two component transcriptional regulator  49.57 
 
 
228 aa  211  4.9999999999999996e-54  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_0654  two component transcriptional regulator  49.57 
 
 
228 aa  211  4.9999999999999996e-54  Mycobacterium sp. JLS  Bacteria  normal  normal  0.682961 
 
 
-
 
NC_008705  Mkms_0674  two component transcriptional regulator  49.57 
 
 
228 aa  211  4.9999999999999996e-54  Mycobacterium sp. KMS  Bacteria  normal  normal  0.850641 
 
 
-
 
NC_008576  Mmc1_1893  two component transcriptional regulator  47.77 
 
 
235 aa  211  7.999999999999999e-54  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.203788 
 
 
-
 
NC_008726  Mvan_0831  two component transcriptional regulator  49.57 
 
 
228 aa  211  1e-53  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.310785  normal 
 
 
-
 
NC_009953  Sare_4990  two component transcriptional regulator  50.91 
 
 
228 aa  209  3e-53  Salinispora arenicola CNS-205  Bacteria  normal  0.866601  hitchhiker  0.000134834 
 
 
-
 
NC_010571  Oter_2550  two component transcriptional regulator  52.27 
 
 
228 aa  208  4e-53  Opitutus terrae PB90-1  Bacteria  normal  normal  0.0605198 
 
 
-
 
NC_013510  Tcur_0700  two component transcriptional regulator, winged helix family  50 
 
 
226 aa  209  4e-53  Thermomonospora curvata DSM 43183  Bacteria  normal  0.768939  n/a   
 
 
-
 
NC_014210  Ndas_4322  two component transcriptional regulator, winged helix family  50 
 
 
231 aa  209  4e-53  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_2367  two component transcriptional regulator  45.95 
 
 
235 aa  208  4e-53  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_0082  two component transcriptional regulator  49.78 
 
 
228 aa  208  5e-53  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_0399  two component transcriptional regulator  48.23 
 
 
272 aa  208  6e-53  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.802217  normal 
 
 
-
 
NC_007333  Tfu_2910  response regulator receiver  49.57 
 
 
230 aa  208  6e-53  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_02690  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  49.57 
 
 
229 aa  208  6e-53  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_4477  response regulator receiver  50.91 
 
 
228 aa  208  6e-53  Salinispora tropica CNB-440  Bacteria  normal  normal  0.0220713 
 
 
-
 
NC_009565  TBFG_10499  two component system sensor transduction protein regX3  49.78 
 
 
227 aa  208  6e-53  Mycobacterium tuberculosis F11  Bacteria  decreased coverage  2.46064e-66  normal 
 
 
-
 
NC_013757  Gobs_4602  two component transcriptional regulator, winged helix family  48.68 
 
 
226 aa  207  9e-53  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_4546  two component transcriptional regulator  51.34 
 
 
230 aa  207  1e-52  Caulobacter sp. K31  Bacteria  normal  normal  0.281853 
 
 
-
 
NC_014165  Tbis_0499  winged helix family two component transcriptional regulator  49.12 
 
 
229 aa  207  2e-52  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_1491  two component transcriptional regulator PhoB, winged helix family  45.5 
 
 
235 aa  206  2e-52  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0951  response regulator receiver protein  48.91 
 
 
239 aa  206  2e-52  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.0000000111905  n/a   
 
 
-
 
NC_010320  Teth514_1997  two component transcriptional regulator  48.68 
 
 
234 aa  206  2e-52  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000000742772  n/a   
 
 
-
 
NC_009718  Fnod_1490  two component transcriptional regulator  45.02 
 
 
239 aa  207  2e-52  Fervidobacterium nodosum Rt17-B1  Bacteria  unclonable  0.000000000120928  n/a   
 
 
-
 
NC_014158  Tpau_0654  two component transcriptional regulator, winged helix family  50.65 
 
 
229 aa  206  2e-52  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.200991  n/a   
 
 
-
 
NC_011666  Msil_0834  two component transcriptional regulator PhoB, winged helix family  50 
 
 
265 aa  206  3e-52  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0108417 
 
 
-
 
NC_013595  Sros_0961  response regulator receiver protein  48.26 
 
 
229 aa  206  3e-52  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_4913  two component transcriptional regulator  46.85 
 
 
231 aa  206  3e-52  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.121364 
 
 
-
 
NC_008347  Mmar10_0483  two component transcriptional regulator  50.45 
 
 
229 aa  206  3e-52  Maricaulis maris MCS10  Bacteria  normal  0.342081  normal 
 
 
-
 
NC_013235  Namu_4929  two component transcriptional regulator, winged helix family  48.68 
 
 
226 aa  205  4e-52  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_1028  two component transcriptional regulator, winged helix family  50.22 
 
 
237 aa  205  4e-52  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1011  two component transcriptional regulator, winged helix family  49.12 
 
 
231 aa  205  4e-52  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_2316  two component transcriptional regulator PhoB, winged helix family  46.61 
 
 
230 aa  205  5e-52  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6749  two component transcriptional regulator, winged helix family  49.12 
 
 
226 aa  205  5e-52  Actinosynnema mirum DSM 43827  Bacteria  normal  0.290774  n/a   
 
 
-
 
NC_013131  Caci_8215  two component transcriptional regulator, winged helix family  49.34 
 
 
226 aa  204  6e-52  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0578  two component transcriptional regulator  48.2 
 
 
240 aa  204  7e-52  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_2631  two component transcriptional regulator  45.05 
 
 
235 aa  204  9e-52  Acidovorax citrulli AAC00-1  Bacteria  normal  0.552533  normal  0.0653315 
 
 
-
 
NC_009486  Tpet_1136  two component transcriptional regulator  46.29 
 
 
239 aa  204  1e-51  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000000652217  n/a   
 
 
-
 
NC_013169  Ksed_03700  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  45.61 
 
 
226 aa  203  1e-51  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.132847 
 
 
-
 
NC_013385  Adeg_0644  two component transcriptional regulator, winged helix family  51.34 
 
 
236 aa  204  1e-51  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_1174  two component transcriptional regulator  46.29 
 
 
239 aa  204  1e-51  Thermotoga sp. RQ2  Bacteria  normal  0.0181894  n/a   
 
 
-
 
NC_011725  BCB4264_A5589  DNA-binding response regulator YycF  46.26 
 
 
235 aa  203  2e-51  Bacillus cereus B4264  Bacteria  normal  0.0469644  n/a   
 
 
-
 
NC_009674  Bcer98_4006  two component transcriptional regulator  46.26 
 
 
235 aa  202  2e-51  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.010356  n/a   
 
 
-
 
NC_009511  Swit_3577  two component transcriptional regulator  50.9 
 
 
232 aa  203  2e-51  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.70324 
 
 
-
 
NC_011772  BCG9842_B5346  DNA-binding response regulator YycF  46.26 
 
 
235 aa  203  2e-51  Bacillus cereus G9842  Bacteria  hitchhiker  0.000000234523  hitchhiker  0.00000000000323141 
 
 
-
 
NC_010184  BcerKBAB4_5259  two component transcriptional regulator  46.26 
 
 
235 aa  202  2e-51  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000559572  n/a   
 
 
-
 
NC_009513  Lreu_0019  two component transcriptional regulator  47.37 
 
 
235 aa  202  3e-51  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5615  DNA-binding response regulator YycF  46.26 
 
 
235 aa  202  4e-51  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5319  DNA-binding response regulator YycF  46.26 
 
 
235 aa  202  4e-51  Bacillus anthracis str. Sterne  Bacteria  normal  0.169223  n/a   
 
 
-
 
NC_005957  BT9727_5147  response regulator  46.26 
 
 
235 aa  202  4e-51  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00168683  n/a   
 
 
-
 
NC_006274  BCZK5163  response regulator  46.26 
 
 
235 aa  202  4e-51  Bacillus cereus E33L  Bacteria  hitchhiker  0.00196509  n/a   
 
 
-
 
NC_007530  GBAA_5715  DNA-binding response regulator YycF  46.26 
 
 
235 aa  202  4e-51  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.656882  n/a   
 
 
-
 
NC_011773  BCAH820_5572  DNA-binding response regulator YycF  46.26 
 
 
235 aa  202  4e-51  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.81316e-29 
 
 
-
 
NC_007948  Bpro_2257  two component transcriptional regulator  46.12 
 
 
243 aa  202  4e-51  Polaromonas sp. JS666  Bacteria  normal  0.512842  normal  0.410356 
 
 
-
 
NC_008541  Arth_0724  two component transcriptional regulator  47.81 
 
 
226 aa  202  4e-51  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A5650  DNA-binding response regulator YycF  46.26 
 
 
235 aa  202  4e-51  Bacillus cereus AH187  Bacteria  hitchhiker  0.00563499  n/a   
 
 
-
 
NC_007777  Francci3_0471  two component transcriptional regulator  51.09 
 
 
226 aa  201  6e-51  Frankia sp. CcI3  Bacteria  normal  normal  0.734397 
 
 
-
 
NC_012793  GWCH70_3409  two component transcriptional regulator, winged helix family  48.25 
 
 
236 aa  201  6e-51  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_21640  two component transcriptional regulator, winged helix family  47.56 
 
 
226 aa  201  6e-51  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000000176926  n/a   
 
 
-
 
NC_013411  GYMC61_3538  two component transcriptional regulator, winged helix family  47.6 
 
 
237 aa  201  8e-51  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
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