More than 300 homologs were found in PanDaTox collection
for query gene Ppha_1701 on replicon NC_011060
Organism: Pelodictyon phaeoclathratiforme BU-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011060  Ppha_1701  two component transcriptional regulator, winged helix family  100 
 
 
236 aa  470  1.0000000000000001e-131  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_007514  Cag_0435  two component transcriptional regulator  79.57 
 
 
253 aa  380  1e-104  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.583358  n/a   
 
 
-
 
NC_010803  Clim_0772  two component transcriptional regulator, winged helix family  79.39 
 
 
233 aa  375  1e-103  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_0632  two component transcriptional regulator  76.32 
 
 
236 aa  362  2e-99  Chlorobium luteolum DSM 273  Bacteria  normal  0.883969  normal 
 
 
-
 
NC_008639  Cpha266_0880  two component transcriptional regulator  76.75 
 
 
236 aa  358  6e-98  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_0769  two component transcriptional regulator, winged helix family  75.33 
 
 
236 aa  353  2e-96  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_010831  Cphamn1_1694  two component transcriptional regulator, winged helix family  71.93 
 
 
236 aa  335  3.9999999999999995e-91  Chlorobium phaeobacteroides BS1  Bacteria  normal  decreased coverage  0.0000906935 
 
 
-
 
NC_013440  Hoch_6002  two component transcriptional regulator, winged helix family  48.44 
 
 
243 aa  228  8e-59  Haliangium ochraceum DSM 14365  Bacteria  normal  0.472724  normal 
 
 
-
 
NC_010814  Glov_0588  two component transcriptional regulator, winged helix family  50.22 
 
 
226 aa  227  1e-58  Geobacter lovleyi SZ  Bacteria  normal  0.944339  n/a   
 
 
-
 
NC_008576  Mmc1_1491  two component transcriptional regulator  48.44 
 
 
236 aa  224  1e-57  Magnetococcus sp. MC-1  Bacteria  normal  decreased coverage  0.00391258 
 
 
-
 
NC_011146  Gbem_1865  two component transcriptional regulator, winged helix family  48.65 
 
 
226 aa  223  2e-57  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1572  two component transcriptional regulator  49.56 
 
 
225 aa  222  3e-57  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000784208  n/a   
 
 
-
 
NC_012918  GM21_2513  two component transcriptional regulator, winged helix family  50 
 
 
225 aa  222  4.9999999999999996e-57  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007517  Gmet_2693  two component transcriptional regulator  49.12 
 
 
226 aa  220  9.999999999999999e-57  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.575064 
 
 
-
 
NC_002939  GSU1102  DNA-binding response regulator  48.23 
 
 
225 aa  220  1.9999999999999999e-56  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1271  two component transcriptional regulator, winged helix family  49.56 
 
 
225 aa  219  1.9999999999999999e-56  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_2952  two component transcriptional regulator, winged helix family  49.12 
 
 
225 aa  218  8.999999999999998e-56  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1846  two component transcriptional regulator, winged helix family  48.2 
 
 
226 aa  217  2e-55  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_4125  two component transcriptional regulator, winged helix family  47.98 
 
 
230 aa  215  5e-55  Anaeromyxobacter sp. K  Bacteria  normal  0.125271  n/a   
 
 
-
 
NC_011891  A2cp1_4151  two component transcriptional regulator, winged helix family  47.98 
 
 
230 aa  215  5e-55  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_4009  two component transcriptional regulator  47.75 
 
 
230 aa  214  9.999999999999999e-55  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  decreased coverage  0.00751412  n/a   
 
 
-
 
NC_010571  Oter_2550  two component transcriptional regulator  47.06 
 
 
228 aa  213  1.9999999999999998e-54  Opitutus terrae PB90-1  Bacteria  normal  normal  0.0605198 
 
 
-
 
NC_008609  Ppro_3155  two component transcriptional regulator  50 
 
 
228 aa  210  1e-53  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_0415  two component transcriptional regulator  46.19 
 
 
231 aa  206  3e-52  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.777838 
 
 
-
 
NC_008751  Dvul_1911  two component transcriptional regulator  45.85 
 
 
229 aa  204  8e-52  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.258551 
 
 
-
 
NC_011769  DvMF_0882  two component transcriptional regulator, winged helix family  45.49 
 
 
230 aa  204  1e-51  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.148935 
 
 
-
 
NC_008554  Sfum_2892  two component transcriptional regulator  45.58 
 
 
227 aa  202  5e-51  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.0239565 
 
 
-
 
NC_009483  Gura_2556  two component transcriptional regulator  48.88 
 
 
225 aa  201  6e-51  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.000000044969  n/a   
 
 
-
 
NC_008554  Sfum_0707  two component transcriptional regulator  44.3 
 
 
227 aa  200  1.9999999999999998e-50  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.598521  normal 
 
 
-
 
NC_008576  Mmc1_1893  two component transcriptional regulator  43.56 
 
 
235 aa  200  1.9999999999999998e-50  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.203788 
 
 
-
 
NC_013223  Dret_0467  two component transcriptional regulator, winged helix family  43.91 
 
 
230 aa  199  3e-50  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_21640  two component transcriptional regulator, winged helix family  45.95 
 
 
226 aa  197  2.0000000000000003e-49  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000000176926  n/a   
 
 
-
 
NC_007519  Dde_2387  two component transcriptional regulator  43.35 
 
 
229 aa  195  5.000000000000001e-49  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00115026  n/a   
 
 
-
 
NC_007644  Moth_0070  two component transcriptional regulator  44.74 
 
 
229 aa  195  6e-49  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.834843 
 
 
-
 
NC_013510  Tcur_0700  two component transcriptional regulator, winged helix family  45.33 
 
 
226 aa  194  8.000000000000001e-49  Thermomonospora curvata DSM 43183  Bacteria  normal  0.768939  n/a   
 
 
-
 
NC_013093  Amir_6749  two component transcriptional regulator, winged helix family  45.41 
 
 
226 aa  194  1e-48  Actinosynnema mirum DSM 43827  Bacteria  normal  0.290774  n/a   
 
 
-
 
NC_011830  Dhaf_1237  two component transcriptional regulator, winged helix family  45.25 
 
 
234 aa  192  3e-48  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.178035  n/a   
 
 
-
 
NC_012803  Mlut_03750  PhoP-like protein  43.11 
 
 
226 aa  192  4e-48  Micrococcus luteus NCTC 2665  Bacteria  normal  0.181369  n/a   
 
 
-
 
NC_011898  Ccel_2106  two component transcriptional regulator, winged helix family  44.26 
 
 
238 aa  192  4e-48  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0961  response regulator receiver protein  44.83 
 
 
229 aa  191  7e-48  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0499  winged helix family two component transcriptional regulator  44.98 
 
 
229 aa  191  1e-47  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_011883  Ddes_0567  two component transcriptional regulator, winged helix family  44.64 
 
 
225 aa  190  2e-47  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.463355  n/a   
 
 
-
 
NC_007333  Tfu_2910  response regulator receiver  44.1 
 
 
230 aa  190  2e-47  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4322  two component transcriptional regulator, winged helix family  44.78 
 
 
231 aa  190  2e-47  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_2662  two component transcriptional regulator, winged helix family  41.23 
 
 
231 aa  189  2.9999999999999997e-47  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0080  two component transcriptional regulator, winged helix family  43.23 
 
 
230 aa  189  5e-47  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1897  two component transcriptional regulator  46.72 
 
 
227 aa  187  8e-47  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.151466  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0329  two component transcriptional regulator, winged helix family  42.41 
 
 
231 aa  187  9e-47  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_4046  response regulator receiver  44.25 
 
 
225 aa  187  9e-47  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_1136  two component transcriptional regulator  43.93 
 
 
239 aa  186  2e-46  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000000652217  n/a   
 
 
-
 
NC_011126  HY04AAS1_1268  two component transcriptional regulator, winged helix family  41.3 
 
 
229 aa  186  2e-46  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_1174  two component transcriptional regulator  43.93 
 
 
239 aa  186  2e-46  Thermotoga sp. RQ2  Bacteria  normal  0.0181894  n/a   
 
 
-
 
NC_011831  Cagg_1100  two component transcriptional regulator, winged helix family  45.58 
 
 
236 aa  186  2e-46  Chloroflexus aggregans DSM 9485  Bacteria  normal  unclonable  0.0000000182155 
 
 
-
 
NC_011729  PCC7424_2845  two component transcriptional regulator, winged helix family  42.86 
 
 
234 aa  186  2e-46  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013205  Aaci_1728  two component transcriptional regulator, winged helix family  44.73 
 
 
233 aa  186  3e-46  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_4546  two component transcriptional regulator  46.46 
 
 
230 aa  186  4e-46  Caulobacter sp. K31  Bacteria  normal  normal  0.281853 
 
 
-
 
NC_013061  Phep_2522  response regulator receiver  40.09 
 
 
229 aa  184  7e-46  Pedobacter heparinus DSM 2366  Bacteria  normal  0.661278  normal 
 
 
-
 
NC_013131  Caci_8215  two component transcriptional regulator, winged helix family  45.41 
 
 
226 aa  184  7e-46  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008347  Mmar10_0483  two component transcriptional regulator  45.54 
 
 
229 aa  184  9e-46  Maricaulis maris MCS10  Bacteria  normal  0.342081  normal 
 
 
-
 
NC_013159  Svir_02690  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  42.98 
 
 
229 aa  184  9e-46  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_2570  two component transcriptional regulator, winged helix family  41.6 
 
 
239 aa  184  1.0000000000000001e-45  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0951  response regulator receiver protein  42.08 
 
 
239 aa  184  1.0000000000000001e-45  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.0000000111905  n/a   
 
 
-
 
NC_013169  Ksed_03700  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  42.67 
 
 
226 aa  183  2.0000000000000003e-45  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.132847 
 
 
-
 
NC_007498  Pcar_0653  two-component response regulator PhoB  42.79 
 
 
230 aa  183  2.0000000000000003e-45  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.131558  n/a   
 
 
-
 
NC_009767  Rcas_0997  two component transcriptional regulator  46.55 
 
 
230 aa  183  2.0000000000000003e-45  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.679101  normal 
 
 
-
 
NC_012793  GWCH70_2675  two component transcriptional regulator, winged helix family  41.81 
 
 
234 aa  182  3e-45  Geobacillus sp. WCH70  Bacteria  normal  0.661044  n/a   
 
 
-
 
NC_013947  Snas_0580  two component transcriptional regulator, winged helix family  41.33 
 
 
226 aa  182  3e-45  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_0785  two component transcriptional regulator, winged helix family  43.42 
 
 
235 aa  182  3e-45  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009253  Dred_0707  two component transcriptional regulator  41.74 
 
 
232 aa  182  3e-45  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0135  DNA-binding response regulator  45.49 
 
 
230 aa  182  4.0000000000000006e-45  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_0850  two component transcriptional regulator, winged helix family  42.22 
 
 
226 aa  182  4.0000000000000006e-45  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008578  Acel_0088  two component transcriptional regulator  42.54 
 
 
228 aa  182  4.0000000000000006e-45  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_5185  two component transcriptional regulator PhoB, winged helix family  43.91 
 
 
234 aa  182  5.0000000000000004e-45  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.809056 
 
 
-
 
NC_010725  Mpop_5257  two component transcriptional regulator, winged helix family  44.78 
 
 
234 aa  182  5.0000000000000004e-45  Methylobacterium populi BJ001  Bacteria  normal  0.025536  normal 
 
 
-
 
NC_010172  Mext_4718  phosphate regulon transcriptional regulatory protein PhoB  43.91 
 
 
239 aa  182  5.0000000000000004e-45  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.220817 
 
 
-
 
NC_009921  Franean1_6145  two component transcriptional regulator  43.11 
 
 
228 aa  182  5.0000000000000004e-45  Frankia sp. EAN1pec  Bacteria  normal  normal  0.788201 
 
 
-
 
NC_008541  Arth_0724  two component transcriptional regulator  42.22 
 
 
226 aa  182  5.0000000000000004e-45  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1413  DNA-binding response regulator  41.41 
 
 
223 aa  181  6e-45  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A1453  DNA-binding response regulator  41.41 
 
 
223 aa  181  6e-45  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_1200  two component transcriptional regulator  42.98 
 
 
238 aa  181  7e-45  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3739  two component transcriptional regulator, winged helix family  41.96 
 
 
230 aa  181  8.000000000000001e-45  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.0000000000466515  n/a   
 
 
-
 
NC_013216  Dtox_1077  two component transcriptional regulator, winged helix family  40.95 
 
 
235 aa  180  1e-44  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_4198  two component transcriptional regulator, winged helix family  43.17 
 
 
226 aa  180  1e-44  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_011773  BCAH820_1389  DNA-binding response regulator  41.41 
 
 
223 aa  180  1e-44  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_006274  BCZK1193  response regulator  41.41 
 
 
223 aa  180  1e-44  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_0216  two component transcriptional regulator  43.75 
 
 
230 aa  181  1e-44  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.305183 
 
 
-
 
NC_009718  Fnod_1490  two component transcriptional regulator  43.59 
 
 
239 aa  180  1e-44  Fervidobacterium nodosum Rt17-B1  Bacteria  unclonable  0.000000000120928  n/a   
 
 
-
 
NC_007644  Moth_0827  two component transcriptional regulator  45.37 
 
 
256 aa  181  1e-44  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.00211389  normal  0.244563 
 
 
-
 
NC_007947  Mfla_0489  two component transcriptional regulator  44.49 
 
 
228 aa  180  1e-44  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A1351  DNA-binding response regulator  41.41 
 
 
223 aa  181  1e-44  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0378  two component transcriptional regulator  42.17 
 
 
234 aa  180  1e-44  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_0202  two component transcriptional regulator  44.16 
 
 
233 aa  180  1e-44  Xanthobacter autotrophicus Py2  Bacteria  normal  0.382528  normal 
 
 
-
 
NC_013385  Adeg_0644  two component transcriptional regulator, winged helix family  45.02 
 
 
236 aa  180  2e-44  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_1191  response regulator  41.41 
 
 
223 aa  180  2e-44  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1924  two component transcriptional regulator, winged helix family  44.05 
 
 
225 aa  180  2e-44  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_1549  two component transcriptional regulator  41.49 
 
 
241 aa  180  2e-44  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_4602  two component transcriptional regulator, winged helix family  41.78 
 
 
226 aa  180  2e-44  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_2219  two component transcriptional regulator, winged helix family  43.83 
 
 
240 aa  179  2e-44  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6685  two component transcriptional regulator  46.22 
 
 
234 aa  180  2e-44  Methylobacterium sp. 4-46  Bacteria  normal  0.599421  normal 
 
 
-
 
NC_009632  SaurJH1_1580  response regulator receiver  41.49 
 
 
241 aa  180  2e-44  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
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