More than 300 homologs were found in PanDaTox collection
for query gene MADE_03440 on replicon NC_011138
Organism: Alteromonas macleodii 'Deep ecotype'



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011138  MADE_03440  putative DNA-binding response regulator PhoB  100 
 
 
229 aa  472  1e-132  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_1053  two component transcriptional regulator  85.59 
 
 
229 aa  416  9.999999999999999e-116  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0253  DNA-binding response regulator PhoB  77.19 
 
 
229 aa  377  1e-104  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_004385  phosphate regulon transcriptional regulatory protein PhoB  76.75 
 
 
229 aa  374  1e-103  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I2457  response regulator homolog PhoB (phosphate regulon transcriptional regulatory protein)  77.63 
 
 
230 aa  375  1e-103  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3303  two component transcriptional regulator  76.86 
 
 
229 aa  371  1e-102  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000702519  hitchhiker  0.00000106408 
 
 
-
 
NC_009783  VIBHAR_01026  response regulator  76.32 
 
 
229 aa  372  1e-102  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
CP001509  ECD_00347  DNA-binding response regulator in two-component regulatory system with PhoR (or CreC)  75.98 
 
 
229 aa  369  1e-101  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3210  two component transcriptional regulator PhoB, winged helix family  75.98 
 
 
229 aa  369  1e-101  Escherichia coli DH1  Bacteria  normal  0.146413  n/a   
 
 
-
 
NC_010468  EcolC_3234  transcriptional regulator PhoB  75.98 
 
 
229 aa  369  1e-101  Escherichia coli ATCC 8739  Bacteria  normal  0.456974  unclonable  0.00000000819474 
 
 
-
 
NC_009801  EcE24377A_0427  transcriptional regulator PhoB  75.98 
 
 
229 aa  369  1e-101  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_0867  transcriptional regulator PhoB  75.98 
 
 
229 aa  370  1e-101  Enterobacter sp. 638  Bacteria  normal  0.437737  normal 
 
 
-
 
NC_012892  B21_00351  hypothetical protein  75.98 
 
 
229 aa  369  1e-101  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_1041  two component transcriptional regulator  75 
 
 
229 aa  368  1e-101  Serratia proteamaculans 568  Bacteria  normal  normal  0.194422 
 
 
-
 
NC_010658  SbBS512_E0318  transcriptional regulator PhoB  75.98 
 
 
229 aa  369  1e-101  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A0467  transcriptional regulator PhoB  75.98 
 
 
229 aa  369  1e-101  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_0429  transcriptional regulator PhoB  75.98 
 
 
229 aa  369  1e-101  Escherichia coli SMS-3-5  Bacteria  normal  0.283039  normal 
 
 
-
 
NC_011353  ECH74115_0475  transcriptional regulator PhoB  75.98 
 
 
229 aa  369  1e-101  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C0496  transcriptional regulator PhoB  75.55 
 
 
229 aa  366  1e-100  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_1208  phosphate regulon response regulator PhoB  74.67 
 
 
233 aa  365  1e-100  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_3136  phosphate regulon transcriptional regulatory protein PhoB  74.56 
 
 
229 aa  365  1e-100  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3286  phosphate regulon transcriptional regulatory protein  74.56 
 
 
230 aa  366  1e-100  Yersinia pestis Angola  Bacteria  normal  normal  0.0413143 
 
 
-
 
NC_011080  SNSL254_A0441  transcriptional regulator PhoB  75.11 
 
 
229 aa  364  1e-100  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.244741  normal 
 
 
-
 
NC_011094  SeSA_A0454  transcriptional regulator PhoB  75.55 
 
 
229 aa  366  1e-100  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A0435  transcriptional regulator PhoB  75.55 
 
 
229 aa  366  1e-100  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.464381  normal 
 
 
-
 
NC_011149  SeAg_B0435  transcriptional regulator PhoB  75.55 
 
 
229 aa  365  1e-100  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_3276  two component transcriptional regulator  74.56 
 
 
229 aa  365  1e-100  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2969  two component transcriptional regulator  74.67 
 
 
229 aa  364  1e-100  Shewanella pealeana ATCC 700345  Bacteria  decreased coverage  0.000000855765  n/a   
 
 
-
 
NC_009092  Shew_2749  two component transcriptional regulator  74.67 
 
 
241 aa  362  4e-99  Shewanella loihica PV-4  Bacteria  decreased coverage  0.00000593879  unclonable  0.00000330773 
 
 
-
 
NC_008345  Sfri_2768  two component transcriptional regulator, winged helix family protein  74.24 
 
 
229 aa  361  5.0000000000000005e-99  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0176064  n/a   
 
 
-
 
NC_012880  Dd703_2915  two component transcriptional regulator PhoB, winged helix family  73.68 
 
 
229 aa  361  6e-99  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3106  two component transcriptional regulator PhoB, winged helix family  73.68 
 
 
229 aa  360  1e-98  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_3452  two component transcriptional regulator  74.67 
 
 
229 aa  360  1e-98  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00686704  hitchhiker  0.000158375 
 
 
-
 
NC_008700  Sama_1074  response regulator receiver protein  75.11 
 
 
229 aa  360  1e-98  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0000246777  normal  0.491091 
 
 
-
 
NC_007954  Sden_2689  phosphate regulon transcriptional regulatory protein phoB  73.8 
 
 
229 aa  359  2e-98  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00000627834  n/a   
 
 
-
 
NC_009438  Sputcn32_1296  two component transcriptional regulator  74.67 
 
 
229 aa  358  3e-98  Shewanella putrefaciens CN-32  Bacteria  unclonable  0.000000000460678  n/a   
 
 
-
 
NC_009052  Sbal_1378  two component transcriptional regulator  74.24 
 
 
229 aa  357  7e-98  Shewanella baltica OS155  Bacteria  hitchhiker  0.00000291119  n/a   
 
 
-
 
NC_009665  Shew185_1364  two component transcriptional regulator  74.24 
 
 
229 aa  357  7e-98  Shewanella baltica OS185  Bacteria  hitchhiker  0.0000657343  n/a   
 
 
-
 
NC_011663  Sbal223_2981  two component transcriptional regulator PhoB, winged helix family  74.24 
 
 
229 aa  357  7e-98  Shewanella baltica OS223  Bacteria  hitchhiker  0.000000220801  hitchhiker  0.00121997 
 
 
-
 
NC_009997  Sbal195_1403  two component transcriptional regulator  74.24 
 
 
229 aa  357  7e-98  Shewanella baltica OS195  Bacteria  hitchhiker  0.00109837  normal  0.0219543 
 
 
-
 
NC_012917  PC1_1008  two component transcriptional regulator PhoB, winged helix family  72.81 
 
 
229 aa  357  9e-98  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3302  two component transcriptional regulator PhoB, winged helix family  72.81 
 
 
229 aa  357  9e-98  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_1558  phosphate regulon response regulator PhoB  74.56 
 
 
239 aa  357  9.999999999999999e-98  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_2879  two component transcriptional regulator  74.24 
 
 
229 aa  357  9.999999999999999e-98  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.000000143261  hitchhiker  0.00000615281 
 
 
-
 
NC_008321  Shewmr4_2709  two component transcriptional regulator  74.24 
 
 
229 aa  357  9.999999999999999e-98  Shewanella sp. MR-4  Bacteria  hitchhiker  0.00000407229  decreased coverage  0.000000263688 
 
 
-
 
NC_008322  Shewmr7_2777  two component transcriptional regulator  74.24 
 
 
229 aa  357  9.999999999999999e-98  Shewanella sp. MR-7  Bacteria  unclonable  0.000000628627  decreased coverage  0.000208697 
 
 
-
 
NC_008709  Ping_2232  two component transcriptional regulator, winged helix family protein  70.18 
 
 
227 aa  336  1.9999999999999998e-91  Psychromonas ingrahamii 37  Bacteria  normal  0.326614  normal  0.43086 
 
 
-
 
NC_008340  Mlg_1105  two component transcriptional regulator  63.76 
 
 
229 aa  313  1.9999999999999998e-84  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.489008  normal 
 
 
-
 
NC_007484  Noc_2401  phosphate regulon transcriptional regulatory protein phoB  65.79 
 
 
229 aa  308  5.9999999999999995e-83  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_5477  phosphate regulon transcriptional regulatory protein PhoB  63 
 
 
229 aa  306  2.0000000000000002e-82  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0959  two component transcriptional regulator PhoB, winged helix family  63.72 
 
 
229 aa  305  3e-82  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.159493 
 
 
-
 
NC_007005  Psyr_5032  response regulator receiver:transcriptional regulatory protein, C-terminal  63 
 
 
229 aa  305  3e-82  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.330128 
 
 
-
 
NC_007492  Pfl01_5606  two component transcriptional regulator  62.28 
 
 
229 aa  304  8.000000000000001e-82  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_2266  two component transcriptional regulator PhoB, winged helix family  61.95 
 
 
230 aa  304  9.000000000000001e-82  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_5320  winged helix family two component transcriptional regulator  61.84 
 
 
242 aa  303  1.0000000000000001e-81  Pseudomonas putida KT2440  Bacteria  normal  normal  0.023746 
 
 
-
 
NC_010501  PputW619_0154  two component transcriptional regulator  61.84 
 
 
229 aa  303  1.0000000000000001e-81  Pseudomonas putida W619  Bacteria  normal  normal  0.596099 
 
 
-
 
NC_012560  Avin_48520  phosphate regulon response regulator; PhoB  62.11 
 
 
229 aa  303  1.0000000000000001e-81  Azotobacter vinelandii DJ  Bacteria  normal  0.0667889  n/a   
 
 
-
 
NC_009512  Pput_5228  two component transcriptional regulator  61.84 
 
 
229 aa  303  1.0000000000000001e-81  Pseudomonas putida F1  Bacteria  normal  0.661336  normal  0.450139 
 
 
-
 
NC_010322  PputGB1_5367  two component transcriptional regulator  61.84 
 
 
229 aa  303  1.0000000000000001e-81  Pseudomonas putida GB-1  Bacteria  normal  normal  0.400776 
 
 
-
 
NC_007912  Sde_3838  response regulator receiver domain-containing protein  61.57 
 
 
234 aa  303  2.0000000000000002e-81  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.0000539223  normal 
 
 
-
 
NC_009439  Pmen_4408  two component transcriptional regulator  61.4 
 
 
229 aa  301  4.0000000000000003e-81  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0897949 
 
 
-
 
NC_009656  PSPA7_6138  two-component response regulator PhoB  61.84 
 
 
229 aa  301  7.000000000000001e-81  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_70750  two-component response regulator PhoB  61.84 
 
 
229 aa  301  7.000000000000001e-81  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_3596  two component transcriptional regulator  62.28 
 
 
230 aa  296  2e-79  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_4400  two component transcriptional regulator  61.67 
 
 
236 aa  296  2e-79  Marinomonas sp. MWYL1  Bacteria  normal  0.998417  normal 
 
 
-
 
NC_011662  Tmz1t_0227  two component transcriptional regulator PhoB, winged helix family  61.06 
 
 
236 aa  296  2e-79  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0098  two component transcriptional regulator  60.53 
 
 
229 aa  295  3e-79  Halorhodospira halophila SL1  Bacteria  normal  0.761303  n/a   
 
 
-
 
NC_007947  Mfla_0489  two component transcriptional regulator  60.53 
 
 
228 aa  291  7e-78  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_0216  two component transcriptional regulator  59.39 
 
 
230 aa  284  7e-76  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.305183 
 
 
-
 
NC_009524  PsycPRwf_2093  two component transcriptional regulator  59.29 
 
 
233 aa  284  7e-76  Psychrobacter sp. PRwf-1  Bacteria  normal  0.582679  normal 
 
 
-
 
NC_011901  Tgr7_2472  response regulator receiver protein  64.11 
 
 
216 aa  283  1.0000000000000001e-75  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_2853  two component transcriptional regulator, winged helix family  58.7 
 
 
233 aa  280  1e-74  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A1271  two component transcriptional regulator  58.7 
 
 
233 aa  280  1e-74  Burkholderia xenovorans LB400  Bacteria  normal  0.624894  normal  0.128476 
 
 
-
 
NC_007963  Csal_3253  two component transcriptional regulator  59.91 
 
 
229 aa  280  1e-74  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_0887  two component transcriptional regulator  58.7 
 
 
233 aa  279  2e-74  Burkholderia phymatum STM815  Bacteria  normal  0.686184  normal  0.0397846 
 
 
-
 
NC_007510  Bcep18194_A4448  two component transcriptional regulator  58.7 
 
 
233 aa  278  3e-74  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_2015  two component transcriptional regulator  58.7 
 
 
233 aa  278  6e-74  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.582968  normal 
 
 
-
 
NC_009076  BURPS1106A_1520  phosphate regulon transcriptional regulatory protein PhoB  58.26 
 
 
233 aa  278  7e-74  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1296  phosphate regulon transcriptional regulatory protein PhoB  58.26 
 
 
233 aa  278  7e-74  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA0785  DNA-binding response regulator PhoB  58.26 
 
 
233 aa  278  7e-74  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A0572  phosphate regulon transcriptional regulatory protein PhoB  58.26 
 
 
233 aa  278  7e-74  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_1623  phosphate regulon transcriptional regulatory protein PhoB  58.26 
 
 
233 aa  278  7e-74  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_1490  phosphate regulon transcriptional regulatory protein PhoB  58.26 
 
 
233 aa  278  7e-74  Burkholderia pseudomallei 668  Bacteria  normal  0.72233  n/a   
 
 
-
 
NC_007651  BTH_I2768  phosphate regulon transcriptional regulatory protein PhoB  58.26 
 
 
233 aa  278  7e-74  Burkholderia thailandensis E264  Bacteria  normal  0.368066  n/a   
 
 
-
 
NC_010551  BamMC406_1194  two component transcriptional regulator  58.7 
 
 
233 aa  278  7e-74  Burkholderia ambifaria MC40-6  Bacteria  normal  0.159741  normal  0.484581 
 
 
-
 
NC_010508  Bcenmc03_1276  two component transcriptional regulator  58.7 
 
 
233 aa  278  7e-74  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_0824  two component transcriptional regulator  58.7 
 
 
233 aa  278  7e-74  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_0579  phosphate regulon transcriptional regulatory protein PhoB  58.26 
 
 
233 aa  278  7e-74  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0503015  n/a   
 
 
-
 
NC_008390  Bamb_1182  two component transcriptional regulator  58.7 
 
 
233 aa  278  7e-74  Burkholderia ambifaria AMMD  Bacteria  normal  0.547738  n/a   
 
 
-
 
NC_008542  Bcen2424_1305  two component transcriptional regulator  58.7 
 
 
233 aa  278  7e-74  Burkholderia cenocepacia HI2424  Bacteria  normal  0.920206  n/a   
 
 
-
 
NC_003295  RSc1534  phosphate regulon two-component response regulator transcription regulator protein  58.62 
 
 
237 aa  275  3e-73  Ralstonia solanacearum GMI1000  Bacteria  normal  0.286797  normal 
 
 
-
 
NC_012856  Rpic12D_1713  two component transcriptional regulator PhoB, winged helix family  58.62 
 
 
237 aa  274  8e-73  Ralstonia pickettii 12D  Bacteria  normal  0.0484795  normal  0.810471 
 
 
-
 
NC_010682  Rpic_2021  two component transcriptional regulator, winged helix family  58.62 
 
 
237 aa  274  8e-73  Ralstonia pickettii 12J  Bacteria  normal  0.198844  normal 
 
 
-
 
NC_002977  MCA3105  DNA-binding response regulator PhoB  59.73 
 
 
232 aa  273  2.0000000000000002e-72  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_02492  phosphate regulon transcriptional regulatory protein PhoB  55.95 
 
 
229 aa  271  7e-72  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.506678  n/a   
 
 
-
 
NC_007614  Nmul_A2231  two component transcriptional regulator  55.07 
 
 
234 aa  270  1e-71  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_0824  two component transcriptional regulator, winged helix family  54.82 
 
 
229 aa  270  1e-71  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_2180  two component transcriptional regulator  55.65 
 
 
235 aa  266  1e-70  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.0753297 
 
 
-
 
NC_007347  Reut_A2162  phosphate regulon transcriptional regulatory protein phoB  56.52 
 
 
235 aa  266  2e-70  Ralstonia eutropha JMP134  Bacteria  normal  0.308703  n/a   
 
 
-
 
NC_007204  Psyc_1923  two component transcriptional regulator  53.98 
 
 
234 aa  265  5e-70  Psychrobacter arcticus 273-4  Bacteria  normal  0.172224  normal  0.01117 
 
 
-
 
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