| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0623 |
|---|
| Symbol | |
|---|
| ID | 4201620 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 750608 |
|---|
| End bp | 751303 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 27% |
|---|
| IMG OID | 638081508 |
|---|
| Product | DNA-binding response regulator |
|---|
| Protein accession | YP_695076 |
|---|
| Protein GI | 110801119 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000212568 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAATA AAAAAGTCCT AATAGTAGAT GATGAGGAAC ATATTAGAGA ACTTATAAAA
TTTAATTTAA AAAAAGAGGG ATATGATACA GAAGTTGCTG TTAATGGAAC TGAAGCTCTA
AAGCTTATAA GAGAAATTAA GTTTGATTTA ATACTTTTAG ATTTAATGCT TCCAGAAATA
GATGGCTTAG AAGTATGTAA AGAAATTAGA AGAAATGAAG AAACTTCAGA TATTCCAGTA
ATGATGATTA CAGCAAAGGG GGAAGAGTTT GATAAAGTAT TAGGCTTAGA ACTTGGAGCA
GATGATTATA TAACAAAGCC ATTTTCAATA AGAGAACTTA TGGCTAGAGT AAAAGCTTTA
CTTAGAAGAA GTAATGTTAA AAAAGAAGAA AATATAATTA AATTTGGTGA TGTAGTAGTT
AATTTTAAAA CAAGAGAAGT AACAAAAGGA ACTCAAAATG TAGAATTAAC ATTAAAGGAG
TTTGAATTAT TAAAGCTTCT TATAAAGAAT AAGGGCAATA TATTAACTAG AGAACTTTTG
CTTGATAAAA TTTGGGGATA TGAATACATA GGTGAAACAA GAACAGTAGA TGTTCATATT
AGACATTTAC GCAAAAAGAT TGAAAGTGAT GATAAAAATC CTCAATATAT TCAAACTATA
AGAGGAGTTG GATATAAGTT TACAAGCAAT GAATAA
|
|---|
| Protein sequence | MTNKKVLIVD DEEHIRELIK FNLKKEGYDT EVAVNGTEAL KLIREIKFDL ILLDLMLPEI
DGLEVCKEIR RNEETSDIPV MMITAKGEEF DKVLGLELGA DDYITKPFSI RELMARVKAL
LRRSNVKKEE NIIKFGDVVV NFKTREVTKG TQNVELTLKE FELLKLLIKN KGNILTRELL
LDKIWGYEYI GETRTVDVHI RHLRKKIESD DKNPQYIQTI RGVGYKFTSN E
|
|---|
| |