More than 300 homologs were found in PanDaTox collection
for query gene Ssed_0184 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010506  Swoo_0164  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  85.01 
 
 
1123 aa  1319    Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_0184  methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor  100 
 
 
863 aa  1749    Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_3105  putative methyl-accepting chemotaxis sensory transducer  58.15 
 
 
767 aa  722    Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0111  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  71.41 
 
 
864 aa  1229    Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_3497  putative methyl-accepting chemotaxis sensory transducer  65.47 
 
 
860 aa  1137    Shewanella amazonensis SB2B  Bacteria  normal  0.19961  normal 
 
 
-
 
NC_008322  Shewmr7_1883  methyl-accepting chemotaxis sensory transducer  48.55 
 
 
656 aa  556  1e-157  Shewanella sp. MR-7  Bacteria  normal  normal  0.113479 
 
 
-
 
NC_008577  Shewana3_2216  methyl-accepting chemotaxis sensory transducer  48.55 
 
 
657 aa  555  1e-156  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_2100  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  49.42 
 
 
665 aa  550  1e-155  Shewanella baltica OS223  Bacteria  normal  0.328344  normal 
 
 
-
 
NC_004347  SO_2123  methyl-accepting chemotaxis protein  47.53 
 
 
654 aa  552  1e-155  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_2245  methyl-accepting chemotaxis sensory transducer  49.42 
 
 
664 aa  550  1e-155  Shewanella baltica OS185  Bacteria  normal  0.232427  n/a   
 
 
-
 
NC_008321  Shewmr4_2091  methyl-accepting chemotaxis sensory transducer  48.39 
 
 
656 aa  551  1e-155  Shewanella sp. MR-4  Bacteria  normal  normal  0.684691 
 
 
-
 
NC_009052  Sbal_2114  methyl-accepting chemotaxis sensory transducer  46.87 
 
 
657 aa  548  1e-154  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_2362  methyl-accepting chemotaxis sensory transducer  49.16 
 
 
664 aa  543  1e-153  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_02220  putative chemotaxis transducer  57.86 
 
 
679 aa  501  1e-140  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.329962  normal 
 
 
-
 
NC_009656  PSPA7_0256  chemotaxis transducer  57.97 
 
 
679 aa  496  9.999999999999999e-139  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0729  PAS  56.48 
 
 
945 aa  491  1e-137  Dechloromonas aromatica RCB  Bacteria  normal  0.0635035  normal 
 
 
-
 
NC_007912  Sde_3112  putative methyl-accepting chemotaxis sensory transducer  55.56 
 
 
1029 aa  483  1e-135  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_0151  methyl-accepting chemotaxis protein  44.58 
 
 
678 aa  481  1e-134  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0728  histidine kinase, HAMP region: chemotaxis sensory transducer  55.91 
 
 
792 aa  469  9.999999999999999e-131  Dechloromonas aromatica RCB  Bacteria  normal  0.066629  normal 
 
 
-
 
NC_011071  Smal_1847  methyl-accepting chemotaxis sensory transducer  49.26 
 
 
793 aa  429  1e-119  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.143361  normal  0.380239 
 
 
-
 
NC_010717  PXO_00039  chemotaxis protein  45.91 
 
 
775 aa  423  1e-117  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.371493  n/a   
 
 
-
 
NC_010717  PXO_00054  methyl-accepting chemotaxis protein  44.94 
 
 
797 aa  418  9.999999999999999e-116  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.276697  n/a   
 
 
-
 
NC_011071  Smal_3993  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  45.71 
 
 
701 aa  397  1e-109  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.311816 
 
 
-
 
NC_007520  Tcr_0553  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  44.33 
 
 
888 aa  390  1e-107  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0158  chemotaxis protein  46.95 
 
 
779 aa  381  1e-104  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A0206  methyl-accepting chemotaxis protein  44.21 
 
 
793 aa  383  1e-104  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_2163  methyl-accepting chemotaxis sensory transducer  44.17 
 
 
610 aa  365  1e-99  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1530  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  41.44 
 
 
890 aa  350  1e-94  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.155082 
 
 
-
 
NC_010717  PXO_00043  chemotaxis protein  52.08 
 
 
705 aa  347  5e-94  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.51691  n/a   
 
 
-
 
NC_011071  Smal_1846  methyl-accepting chemotaxis sensory transducer  48.23 
 
 
755 aa  345  2e-93  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.422723  normal  0.381468 
 
 
-
 
NC_010717  PXO_00047  chemotaxis protein  48.03 
 
 
733 aa  345  2.9999999999999997e-93  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_00041  chemotaxis protein  52.56 
 
 
752 aa  343  1e-92  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.292066  n/a   
 
 
-
 
NC_009485  BBta_2145  methyl-accepting chemotaxis protein  34.17 
 
 
781 aa  343  1e-92  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.297887  normal 
 
 
-
 
NC_011071  Smal_1169  methyl-accepting chemotaxis sensory transducer  54.39 
 
 
740 aa  340  5e-92  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_1851  methyl-accepting chemotaxis sensory transducer  51.38 
 
 
745 aa  336  1e-90  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.195185 
 
 
-
 
NC_010717  PXO_00046  chemotaxis protein  51.26 
 
 
753 aa  328  2.0000000000000001e-88  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_3537  methyl-accepting chemotaxis sensory transducer  51.6 
 
 
843 aa  315  1.9999999999999998e-84  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_2791  methyl-accepting chemotaxis protein  38.38 
 
 
622 aa  314  3.9999999999999997e-84  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_3633  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  39.69 
 
 
845 aa  306  8.000000000000001e-82  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.522396 
 
 
-
 
NC_011071  Smal_3896  methyl-accepting chemotaxis sensory transducer  50.15 
 
 
706 aa  305  2.0000000000000002e-81  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.337027  normal  0.882129 
 
 
-
 
NC_010524  Lcho_1531  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  38.06 
 
 
1019 aa  301  3e-80  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.301691 
 
 
-
 
NC_007517  Gmet_1078  methyl-accepting chemotaxis sensory transducer  54.87 
 
 
587 aa  296  9e-79  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00101669 
 
 
-
 
NC_010717  PXO_00045  chemotaxis protein  55.91 
 
 
691 aa  295  3e-78  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.505093  n/a   
 
 
-
 
NC_003295  RSc0606  putative methyl-accepting chemotaxis transmembrane protein  59.44 
 
 
617 aa  293  1e-77  Ralstonia solanacearum GMI1000  Bacteria  normal  0.535208  normal  0.212062 
 
 
-
 
NC_010524  Lcho_1532  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  31.54 
 
 
853 aa  293  1e-77  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.103077 
 
 
-
 
NC_007404  Tbd_1622  methyl-accepting chemotaxis sensory transducer  52.01 
 
 
572 aa  292  2e-77  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.415216  normal 
 
 
-
 
NC_007908  Rfer_2507  methyl-accepting chemotaxis sensory transducer  51.91 
 
 
589 aa  291  4e-77  Rhodoferax ferrireducens T118  Bacteria  normal  0.197123  n/a   
 
 
-
 
NC_012856  Rpic12D_0523  methyl-accepting chemotaxis sensory transducer with Cache sensor  60.7 
 
 
608 aa  291  5.0000000000000004e-77  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_0536  methyl-accepting chemotaxis sensory transducer with Cache sensor  61.09 
 
 
609 aa  291  5.0000000000000004e-77  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1619  chemotaxis sensory transducer  55.13 
 
 
559 aa  290  1e-76  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.940607  normal  0.203143 
 
 
-
 
NC_007336  Reut_C6319  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  56.99 
 
 
601 aa  289  2e-76  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_1816  methyl-accepting chemotaxis sensory transducer  47.49 
 
 
651 aa  289  2e-76  Dickeya dadantii Ech703  Bacteria  normal  0.700193  n/a   
 
 
-
 
NC_007404  Tbd_0660  chemotaxis sensory transducer  55.25 
 
 
586 aa  289  2e-76  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.756829  normal 
 
 
-
 
NC_007908  Rfer_2225  methyl-accepting chemotaxis sensory transducer  51.1 
 
 
583 aa  289  2e-76  Rhodoferax ferrireducens T118  Bacteria  normal  0.220406  n/a   
 
 
-
 
NC_011071  Smal_3007  methyl-accepting chemotaxis sensory transducer  45.98 
 
 
707 aa  288  2e-76  Stenotrophomonas maltophilia R551-3  Bacteria  normal  decreased coverage  0.00177393 
 
 
-
 
NC_011146  Gbem_1044  methyl-accepting chemotaxis sensory transducer  59.7 
 
 
584 aa  289  2e-76  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3217  methyl-accepting chemotaxis sensory transducer with Cache sensor  59.7 
 
 
584 aa  288  2.9999999999999996e-76  Geobacter sp. M21  Bacteria  n/a    normal  0.480757 
 
 
-
 
NC_007404  Tbd_1618  chemotaxis sensory transducer  54.36 
 
 
557 aa  287  5e-76  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.126465 
 
 
-
 
NC_009483  Gura_2167  methyl-accepting chemotaxis sensory transducer  55.25 
 
 
585 aa  286  1.0000000000000001e-75  Geobacter uraniireducens Rf4  Bacteria  normal  0.38945  n/a   
 
 
-
 
NC_012912  Dd1591_1542  methyl-accepting chemotaxis sensory transducer  50.48 
 
 
566 aa  285  2.0000000000000002e-75  Dickeya zeae Ech1591  Bacteria  normal  0.350049  n/a   
 
 
-
 
NC_008782  Ajs_0364  methyl-accepting chemotaxis sensory transducer  52.17 
 
 
580 aa  286  2.0000000000000002e-75  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_1956  methyl-accepting chemotaxis sensory transducer  53.9 
 
 
598 aa  284  5.000000000000001e-75  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0136938 
 
 
-
 
NC_007963  Csal_2019  methyl-accepting chemotaxis sensory transducer  42.15 
 
 
567 aa  284  6.000000000000001e-75  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_0354  methyl-accepting chemotaxis sensory transducer  53.68 
 
 
578 aa  283  7.000000000000001e-75  Acidovorax ebreus TPSY  Bacteria  normal  0.496762  n/a   
 
 
-
 
NC_010622  Bphy_2972  methyl-accepting chemotaxis sensory transducer  56.2 
 
 
597 aa  283  8.000000000000001e-75  Burkholderia phymatum STM815  Bacteria  normal  hitchhiker  0.00113075 
 
 
-
 
NC_009074  BURPS668_0502  methyl-accepting chemotaxis protein  57.8 
 
 
546 aa  282  2e-74  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_1480  methyl-accepting chemotaxis sensory transducer  51.62 
 
 
537 aa  281  3e-74  Rhodoferax ferrireducens T118  Bacteria  normal  0.201713  n/a   
 
 
-
 
NC_009076  BURPS1106A_0520  methyl-accepting chemotaxis protein  57.8 
 
 
546 aa  281  3e-74  Burkholderia pseudomallei 1106a  Bacteria  normal  0.640738  n/a   
 
 
-
 
NC_009080  BMA10247_2862  methyl-accepting chemotaxis protein  57.8 
 
 
546 aa  281  3e-74  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1435  methyl-accepting chemotaxis protein  57.8 
 
 
546 aa  281  3e-74  Burkholderia mallei NCTC 10229  Bacteria  normal  0.631191  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0157  methyl-accepting chemotaxis protein  57.8 
 
 
546 aa  281  3e-74  Burkholderia mallei SAVP1  Bacteria  normal  0.293853  n/a   
 
 
-
 
NC_012856  Rpic12D_2632  methyl-accepting chemotaxis sensory transducer with Cache sensor  57.64 
 
 
515 aa  281  4e-74  Ralstonia pickettii 12D  Bacteria  normal  0.397554  normal  0.945455 
 
 
-
 
NC_010524  Lcho_3216  methyl-accepting chemotaxis sensory transducer  54.74 
 
 
579 aa  281  4e-74  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009436  Ent638_2457  methyl-accepting chemotaxis sensory transducer  50.8 
 
 
555 aa  281  4e-74  Enterobacter sp. 638  Bacteria  normal  0.890786  normal 
 
 
-
 
NC_006348  BMA3184  methyl-accepting chemotaxis protein  57.8 
 
 
511 aa  281  5e-74  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A2418  methyl-accepting chemotaxis protein  51.78 
 
 
659 aa  281  5e-74  Vibrio cholerae O395  Bacteria  hitchhiker  0.00134538  n/a   
 
 
-
 
NC_007434  BURPS1710b_0685  methyl-accepting chemotaxis protein  57.8 
 
 
526 aa  281  5e-74  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_3042  methyl-accepting chemotaxis sensory transducer  57.64 
 
 
515 aa  281  5e-74  Ralstonia pickettii 12J  Bacteria  normal  0.401177  normal 
 
 
-
 
NC_008752  Aave_0104  methyl-accepting chemotaxis sensory transducer  52.54 
 
 
622 aa  281  5e-74  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A0586  methyl-accepting chemotaxis sensory transducer  52.84 
 
 
584 aa  280  6e-74  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0438  methyl-accepting chemotaxis protein  57.8 
 
 
512 aa  280  7e-74  Burkholderia thailandensis E264  Bacteria  normal  0.212381  n/a   
 
 
-
 
NC_007953  Bxe_C0847  methyl-accepting chemotaxis sensory transducer  53.2 
 
 
516 aa  280  8e-74  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.024141 
 
 
-
 
NC_010338  Caul_0276  methyl-accepting chemotaxis sensory transducer  54.15 
 
 
657 aa  280  1e-73  Caulobacter sp. K31  Bacteria  normal  0.461968  normal  0.560518 
 
 
-
 
NC_007908  Rfer_0990  methyl-accepting chemotaxis sensory transducer  51 
 
 
542 aa  280  1e-73  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_0231  methyl-accepting chemotaxis sensory transducer  63.36 
 
 
324 aa  278  2e-73  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_3301  methyl-accepting chemotaxis sensory transducer  43.7 
 
 
626 aa  279  2e-73  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_1960  methyl-accepting chemotaxis sensory transducer  52.88 
 
 
642 aa  279  2e-73  Acidovorax citrulli AAC00-1  Bacteria  normal  0.741418  normal  0.0148687 
 
 
-
 
NC_009708  YpsIP31758_1642  methyl-accepting chemotaxis protein  54.58 
 
 
557 aa  278  3e-73  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_4237  methyl-accepting chemotaxis sensory transducer  62.2 
 
 
513 aa  278  3e-73  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_1753  methyl-accepting chemotaxis sensory transducer  54.58 
 
 
557 aa  278  3e-73  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3123  methyl-accepting chemotaxis sensory transducer  52.9 
 
 
555 aa  278  3e-73  Pectobacterium wasabiae WPP163  Bacteria  decreased coverage  0.000142041  n/a   
 
 
-
 
NC_011094  SeSA_A2074  methyl-accepting chemotaxis protein II  55.2 
 
 
553 aa  278  3e-73  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.162752  hitchhiker  0.000345874 
 
 
-
 
NC_012857  Rpic12D_4347  methyl-accepting chemotaxis sensory transducer with Cache sensor  62.2 
 
 
513 aa  278  3e-73  Ralstonia pickettii 12D  Bacteria  normal  normal  0.473159 
 
 
-
 
NC_011149  SeAg_B1203  methyl-accepting chemotaxis protein II  55.2 
 
 
553 aa  278  4e-73  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.697919  n/a   
 
 
-
 
NC_011080  SNSL254_A2079  methyl-accepting chemotaxis protein II  55.2 
 
 
553 aa  278  4e-73  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.429347  hitchhiker  1.96177e-16 
 
 
-
 
NC_011083  SeHA_C2134  methyl-accepting chemotaxis protein II  55.2 
 
 
553 aa  278  4e-73  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  hitchhiker  1.16019e-17 
 
 
-
 
NC_011205  SeD_A1326  methyl-accepting chemotaxis protein II  55.2 
 
 
553 aa  278  4e-73  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.452066  hitchhiker  2.3261e-17 
 
 
-
 
NC_010627  Bphy_7569  methyl-accepting chemotaxis sensory transducer  59.55 
 
 
576 aa  277  5e-73  Burkholderia phymatum STM815  Bacteria  normal  0.448898  normal  0.153923 
 
 
-
 
NC_007348  Reut_B4001  histidine kinase, HAMP region: chemotaxis sensory transducer  48.91 
 
 
585 aa  277  5e-73  Ralstonia eutropha JMP134  Bacteria  normal  0.0946714  n/a   
 
 
-
 
NC_010159  YpAngola_A3516  methyl-accepting chemotaxis protein  54.58 
 
 
557 aa  277  5e-73  Yersinia pestis Angola  Bacteria  normal  normal  0.698348 
 
 
-
 
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