More than 300 homologs were found in PanDaTox collection
for query gene RPB_3749 on replicon NC_007778
Organism: Rhodopseudomonas palustris HaA2



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007778  RPB_3749  Crp/FNR family transcriptional regulator  100 
 
 
228 aa  468  1.0000000000000001e-131  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.9168  normal 
 
 
-
 
NC_007958  RPD_1723  cyclic nucleotide-binding  86.67 
 
 
228 aa  389  1e-107  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.637067  normal 
 
 
-
 
NC_011004  Rpal_4383  transcriptional regulator, Crp/Fnr family  65.14 
 
 
221 aa  275  4e-73  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.140178  n/a   
 
 
-
 
NC_007925  RPC_4410  Crp/FNR family transcriptional regulator  58.69 
 
 
225 aa  231  5e-60  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.994375  normal  0.444525 
 
 
-
 
NC_007958  RPD_1742  cyclic nucleotide-binding  58.57 
 
 
251 aa  227  9e-59  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_2535  cyclic nucleotide-binding domain-containing protein  57.41 
 
 
228 aa  223  2e-57  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4909  transcriptional regulator, Crp/Fnr family  56.54 
 
 
221 aa  220  1.9999999999999999e-56  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.385812  n/a   
 
 
-
 
NC_009485  BBta_6723  putative cyclic-AMP receptor-like protein  51.39 
 
 
235 aa  215  4e-55  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.823634  normal 
 
 
-
 
NC_009485  BBta_1632  Crp/FNR family transcriptional regulator  53.52 
 
 
250 aa  210  2e-53  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_4082  cyclic nucleotide-binding  53.24 
 
 
220 aa  206  2e-52  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4231  Crp/FNR family transcriptional regulator  52.56 
 
 
220 aa  201  9.999999999999999e-51  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.572136 
 
 
-
 
NC_008009  Acid345_0065  Crp/FNR family transcriptional regulator  51.85 
 
 
258 aa  187  1e-46  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0605636  normal 
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  30.39 
 
 
226 aa  86.7  3e-16  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_013037  Dfer_5316  transcriptional regulator, Crp/Fnr family  29.74 
 
 
354 aa  86.3  4e-16  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.100222 
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  30.34 
 
 
224 aa  85.9  5e-16  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3553  transcriptional regulator, Crp/Fnr family  28.64 
 
 
348 aa  84.3  0.000000000000001  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.528491 
 
 
-
 
NC_013131  Caci_2591  transcriptional regulator, Crp/Fnr family  32.34 
 
 
221 aa  82.8  0.000000000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.44001  normal 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  31.98 
 
 
225 aa  82.8  0.000000000000004  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  29.26 
 
 
226 aa  82  0.000000000000006  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  29.67 
 
 
352 aa  81.6  0.00000000000001  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  31.4 
 
 
225 aa  80.5  0.00000000000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  29.95 
 
 
228 aa  79.3  0.00000000000004  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  26.78 
 
 
225 aa  79.7  0.00000000000004  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  28.33 
 
 
220 aa  77.4  0.0000000000002  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_008255  CHU_1132  transcriptional regulator  25.82 
 
 
355 aa  77.4  0.0000000000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.99008 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  29.14 
 
 
225 aa  77.4  0.0000000000002  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  26.11 
 
 
226 aa  75.9  0.0000000000005  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  28 
 
 
226 aa  75.5  0.0000000000007  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  27.84 
 
 
224 aa  74.3  0.000000000001  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  28.09 
 
 
225 aa  74.7  0.000000000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_013132  Cpin_5556  transcriptional regulator, Crp/Fnr family  28.57 
 
 
352 aa  74.7  0.000000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.487576  normal  0.0420739 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  26.86 
 
 
228 aa  73.9  0.000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_1271  transcriptional regulator, Crp/Fnr family  28.5 
 
 
350 aa  73.6  0.000000000003  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  29.71 
 
 
225 aa  73.2  0.000000000003  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  28.33 
 
 
228 aa  72.4  0.000000000005  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  26.97 
 
 
226 aa  71.6  0.000000000008  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_0303  cyclic nucleotide-binding domain protein  30.39 
 
 
236 aa  72  0.000000000008  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.232206 
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  30.11 
 
 
236 aa  71.6  0.000000000008  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  27.91 
 
 
242 aa  71.6  0.000000000009  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  28.65 
 
 
225 aa  71.6  0.000000000009  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  28.02 
 
 
225 aa  70.9  0.00000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_013947  Snas_5052  transcriptional regulator, Crp/Fnr family  26.4 
 
 
228 aa  71.2  0.00000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.267336 
 
 
-
 
NC_010424  Daud_0783  CRP/FNR family transcriptional regulator  31.41 
 
 
217 aa  70.1  0.00000000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1853  transcriptional regulator, Crp/Fnr family  28.81 
 
 
240 aa  70.9  0.00000000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  29.57 
 
 
236 aa  70.9  0.00000000002  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_007778  RPB_1465  Crp/FNR family transcriptional regulator  28.18 
 
 
236 aa  70.1  0.00000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.342125  normal  0.439299 
 
 
-
 
NC_010816  BLD_0979  cAMP-binding protein  28.73 
 
 
239 aa  69.7  0.00000000003  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_3269  CRP/FNR family transcriptional regulator  26.4 
 
 
230 aa  69.7  0.00000000004  Salinispora tropica CNB-440  Bacteria  normal  0.883713  normal 
 
 
-
 
NC_013440  Hoch_2081  transcriptional regulator, Crp/Fnr family  29.51 
 
 
229 aa  69.3  0.00000000004  Haliangium ochraceum DSM 14365  Bacteria  normal  0.264181  normal 
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  29.21 
 
 
225 aa  69.7  0.00000000004  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  27.37 
 
 
225 aa  69.3  0.00000000005  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  28 
 
 
247 aa  68.9  0.00000000006  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  26.2 
 
 
251 aa  68.9  0.00000000006  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  28.98 
 
 
231 aa  68.9  0.00000000006  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_008789  Hhal_0917  CRP/FNR family transcriptional regulator  28.16 
 
 
254 aa  68.9  0.00000000006  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  27.72 
 
 
239 aa  68.9  0.00000000007  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  27.84 
 
 
225 aa  68.6  0.00000000007  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  24.86 
 
 
226 aa  68.6  0.00000000009  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_010676  Bphyt_7045  transcriptional regulator, Crp/Fnr family  28.8 
 
 
237 aa  68.6  0.00000000009  Burkholderia phytofirmans PsJN  Bacteria  normal  0.601598  normal  0.0108856 
 
 
-
 
NC_013216  Dtox_2750  transcriptional regulator, Crp/Fnr family  25.13 
 
 
222 aa  68.2  0.0000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.0000000354449  normal  0.602467 
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  26.7 
 
 
225 aa  67.8  0.0000000001  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  24.29 
 
 
227 aa  67.8  0.0000000001  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_3499  Crp/FNR family transcriptional regulator  26.11 
 
 
230 aa  68.2  0.0000000001  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00506626 
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  26.86 
 
 
226 aa  67.4  0.0000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_011830  Dhaf_3158  transcriptional regulator, Crp/Fnr family  27.43 
 
 
223 aa  67.4  0.0000000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4447  CRP/FNR family transcriptional regulator  25.39 
 
 
227 aa  67  0.0000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  22.73 
 
 
219 aa  66.6  0.0000000003  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_007298  Daro_1294  cyclic nucleotide-binding: regulatory protein, Crp  28.26 
 
 
220 aa  66.2  0.0000000004  Dechloromonas aromatica RCB  Bacteria  normal  0.957461  normal  0.413121 
 
 
-
 
NC_007952  Bxe_B0027  Crp/FNR family transcriptional regulator  28.26 
 
 
237 aa  66.2  0.0000000004  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_1724  transcriptional regulator, Crp/Fnr family  23 
 
 
230 aa  65.9  0.0000000005  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0755  Crp/FNR family transcriptional regulator  27.37 
 
 
235 aa  65.9  0.0000000005  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.027549  normal  0.149867 
 
 
-
 
NC_011898  Ccel_1678  transcriptional regulator, Crp/Fnr family  28.33 
 
 
234 aa  65.9  0.0000000005  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_1929  Crp/FNR family transcriptional regulator  25.27 
 
 
235 aa  65.5  0.0000000007  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.589711  n/a   
 
 
-
 
NC_008542  Bcen2424_2541  Crp/FNR family transcriptional regulator  25.27 
 
 
235 aa  65.5  0.0000000007  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.000812643  n/a   
 
 
-
 
NC_010524  Lcho_4099  Crp/FNR family transcriptional regulator  23.91 
 
 
237 aa  65.5  0.0000000007  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00000000655046 
 
 
-
 
NC_010508  Bcenmc03_2565  Crp/FNR family transcriptional regulator  25.27 
 
 
235 aa  65.1  0.0000000008  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0695171  normal  0.0307054 
 
 
-
 
NC_008825  Mpe_A1119  catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein)  28.43 
 
 
222 aa  65.1  0.0000000009  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.106899 
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  26.59 
 
 
236 aa  64.3  0.000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_6450  putative transcriptional regulator, Crp/Fnr family  28.33 
 
 
253 aa  64.7  0.000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_4027  cyclic nucleotide-binding protein  27.5 
 
 
216 aa  64.3  0.000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.357709  normal 
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  27.07 
 
 
236 aa  63.9  0.000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_009511  Swit_2706  Crp/FNR family transcriptional regulator  26.2 
 
 
228 aa  63.5  0.000000002  Sphingomonas wittichii RW1  Bacteria  normal  0.154877  normal 
 
 
-
 
NC_012791  Vapar_1284  transcriptional regulator, Crp/Fnr family  27.27 
 
 
224 aa  63.9  0.000000002  Variovorax paradoxus S110  Bacteria  normal  0.304913  n/a   
 
 
-
 
NC_009767  Rcas_0291  Crp/FNR family transcriptional regulator  31.06 
 
 
227 aa  63.9  0.000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.277011  normal 
 
 
-
 
NC_010814  Glov_0629  transcriptional regulator, Crp/Fnr family  27.22 
 
 
230 aa  63.5  0.000000003  Geobacter lovleyi SZ  Bacteria  decreased coverage  0.0000285446  n/a   
 
 
-
 
NC_007510  Bcep18194_A5872  Crp/FNR family transcriptional regulator  26.26 
 
 
235 aa  63.5  0.000000003  Burkholderia sp. 383  Bacteria  normal  0.142608  normal  0.264846 
 
 
-
 
NC_013132  Cpin_0678  transcriptional regulator, Crp/Fnr family  25.28 
 
 
236 aa  63.2  0.000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236133  normal 
 
 
-
 
NC_011757  Mchl_3673  transcriptional regulator, Crp/Fnr family  24.21 
 
 
254 aa  63.2  0.000000003  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.43296  normal 
 
 
-
 
NC_013131  Caci_8903  transcriptional regulator, Crp/Fnr family  28.57 
 
 
224 aa  63.5  0.000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  27.78 
 
 
226 aa  63.5  0.000000003  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_008025  Dgeo_0106  Crp/FNR family transcriptional regulator  28.34 
 
 
254 aa  63.5  0.000000003  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  27.53 
 
 
228 aa  63.2  0.000000003  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_013411  GYMC61_1592  transcriptional regulator, Crp/Fnr family  25.97 
 
 
228 aa  63.2  0.000000003  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010524  Lcho_0755  Crp/FNR family transcriptional regulator  26.92 
 
 
222 aa  63.2  0.000000004  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.2571 
 
 
-
 
NC_010551  BamMC406_2459  Crp/FNR family transcriptional regulator  24.73 
 
 
235 aa  62.8  0.000000004  Burkholderia ambifaria MC40-6  Bacteria  normal  hitchhiker  0.0000341213 
 
 
-
 
NC_010172  Mext_3348  cyclic nucleotide-binding  24.21 
 
 
254 aa  63.2  0.000000004  Methylobacterium extorquens PA1  Bacteria  normal  0.181039  normal 
 
 
-
 
NC_008148  Rxyl_2796  Crp/FNR family transcriptional regulator  27.84 
 
 
250 aa  62.8  0.000000004  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  25.68 
 
 
236 aa  62.8  0.000000004  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_011206  Lferr_0981  transcriptional regulator, Crp/Fnr family  28.74 
 
 
246 aa  62.8  0.000000005  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0154476 
 
 
-
 
NC_009504  BOV_A0257  transcriptional regulator NnrR  26.24 
 
 
232 aa  62.4  0.000000005  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>