More than 300 homologs were found in PanDaTox collection
for query gene Patl_4181 on replicon NC_008228
Organism: Pseudoalteromonas atlantica T6c



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008228  Patl_4181  methyl-accepting chemotaxis sensory transducer  100 
 
 
498 aa  1013    Pseudoalteromonas atlantica T6c  Bacteria  normal  0.07397  n/a   
 
 
-
 
NC_008228  Patl_4183  methyl-accepting chemotaxis sensory transducer  57.62 
 
 
481 aa  513  1e-144  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_00189  putative methyl-accepting chemotaxis protein  32.07 
 
 
493 aa  265  2e-69  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_0263  methyl-accepting chemotaxis protein  33.04 
 
 
498 aa  246  6.999999999999999e-64  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0143  chemotaxis sensory transducer  33.58 
 
 
506 aa  207  3e-52  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2397  putative methyl-accepting chemotaxis sensory transducer  29.68 
 
 
530 aa  189  1e-46  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.448764 
 
 
-
 
NC_008321  Shewmr4_0326  methyl-accepting chemotaxis sensory transducer  31.59 
 
 
463 aa  161  2e-38  Shewanella sp. MR-4  Bacteria  normal  0.876228  normal 
 
 
-
 
NC_008322  Shewmr7_3698  methyl-accepting chemotaxis sensory transducer  31.59 
 
 
463 aa  162  2e-38  Shewanella sp. MR-7  Bacteria  normal  0.246306  normal  0.556215 
 
 
-
 
NC_013501  Rmar_2782  methyl-accepting chemotaxis sensory transducer  25.93 
 
 
601 aa  158  2e-37  Rhodothermus marinus DSM 4252  Bacteria  normal  0.163256  n/a   
 
 
-
 
NC_007348  Reut_B3725  chemotaxis sensory transducer  28.12 
 
 
490 aa  151  3e-35  Ralstonia eutropha JMP134  Bacteria  normal  0.473606  n/a   
 
 
-
 
NC_008345  Sfri_0336  methyl-accepting chemotaxis sensory transducer  28.42 
 
 
500 aa  149  1.0000000000000001e-34  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1030  methyl-accepting chemotaxis protein  29.65 
 
 
549 aa  135  1.9999999999999998e-30  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_0168  methyl-accepting chemotaxis sensory transducer  28.17 
 
 
488 aa  133  6e-30  Acidovorax citrulli AAC00-1  Bacteria  normal  hitchhiker  0.00133638 
 
 
-
 
NC_008345  Sfri_0861  methyl-accepting chemotaxis sensory transducer  33.22 
 
 
542 aa  133  6.999999999999999e-30  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2719  methyl-accepting chemotaxis sensory transducer  33.78 
 
 
655 aa  131  3e-29  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0657  chemotaxis sensory transducer, Cache sensor  32.77 
 
 
648 aa  129  2.0000000000000002e-28  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.511779  normal 
 
 
-
 
NC_008740  Maqu_2346  methyl-accepting chemotaxis sensory transducer  34.25 
 
 
564 aa  128  3e-28  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0922  methyl-accepting chemotaxis sensory transducer  34.42 
 
 
674 aa  127  4.0000000000000003e-28  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_0604  methyl-accepting chemotaxis sensory transducer  35.98 
 
 
641 aa  127  4.0000000000000003e-28  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.471742  n/a   
 
 
-
 
NC_009654  Mmwyl1_0130  methyl-accepting chemotaxis sensory transducer  31.25 
 
 
671 aa  127  6e-28  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0921  methyl-accepting chemotaxis sensory transducer  32.86 
 
 
677 aa  126  1e-27  Marinomonas sp. MWYL1  Bacteria  normal  0.787316  normal 
 
 
-
 
NC_009783  VIBHAR_00119  methyl-accepting chemotaxis protein  42.94 
 
 
626 aa  126  1e-27  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_4274  methyl-accepting chemotaxis sensory transducer with Cache sensor  31.63 
 
 
623 aa  125  2e-27  Shewanella baltica OS195  Bacteria  normal  normal  0.179842 
 
 
-
 
NC_009456  VC0395_0265  methyl-accepting chemotaxis protein  30.49 
 
 
561 aa  125  2e-27  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0194  methyl-accepting chemotaxis sensory transducer with Cache sensor  31.63 
 
 
623 aa  125  2e-27  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0137  methyl-accepting chemotaxis sensory transducer  30.49 
 
 
748 aa  125  2e-27  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_3725  methyl-accepting chemotaxis sensory transducer  33.82 
 
 
620 aa  125  2e-27  Shewanella woodyi ATCC 51908  Bacteria  normal  0.403145  normal 
 
 
-
 
NC_009665  Shew185_4141  methyl-accepting chemotaxis sensory transducer  31.63 
 
 
623 aa  125  2e-27  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0193  methyl-accepting chemotaxis sensory transducer  31.63 
 
 
623 aa  125  2e-27  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_4557  methyl-accepting chemotaxis protein  32.53 
 
 
623 aa  124  3e-27  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010003  Pmob_0509  methyl-accepting chemotaxis sensory transducer  30.49 
 
 
666 aa  124  3e-27  Petrotoga mobilis SJ95  Bacteria  hitchhiker  0.0000844427  n/a   
 
 
-
 
NC_009052  Sbal_0194  methyl-accepting chemotaxis sensory transducer  31.29 
 
 
623 aa  124  4e-27  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0323  methyl-accepting chemotaxis sensory transducer  31.63 
 
 
623 aa  124  4e-27  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_1629  methyl-accepting chemotaxis sensory transducer with Cache sensor  31.53 
 
 
623 aa  124  5e-27  Shewanella pealeana ATCC 700345  Bacteria  normal  0.438395  n/a   
 
 
-
 
NC_008345  Sfri_1146  methyl-accepting chemotaxis sensory transducer  34.74 
 
 
668 aa  124  5e-27  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.970933  n/a   
 
 
-
 
NC_009654  Mmwyl1_0219  methyl-accepting chemotaxis sensory transducer  34.26 
 
 
773 aa  123  6e-27  Marinomonas sp. MWYL1  Bacteria  normal  0.952357  normal 
 
 
-
 
NC_010003  Pmob_0228  methyl-accepting chemotaxis sensory transducer  30.49 
 
 
667 aa  123  6e-27  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0837  methyl-accepting chemotaxis sensory transducer  29.63 
 
 
667 aa  123  6e-27  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0496  methyl-accepting chemotaxis sensory transducer  30.49 
 
 
670 aa  123  7e-27  Petrotoga mobilis SJ95  Bacteria  normal  0.474098  n/a   
 
 
-
 
NC_009439  Pmen_2154  methyl-accepting chemotaxis sensory transducer  28.21 
 
 
627 aa  123  7e-27  Pseudomonas mendocina ymp  Bacteria  normal  0.0789614  normal  0.507372 
 
 
-
 
NC_008577  Shewana3_3950  methyl-accepting chemotaxis sensory transducer  32.13 
 
 
623 aa  123  7e-27  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_4196  methyl-accepting chemotaxis sensory transducer  36.4 
 
 
552 aa  123  9e-27  Shewanella pealeana ATCC 700345  Bacteria  normal  0.14959  n/a   
 
 
-
 
NC_004578  PSPTO_2448  methyl-accepting chemotaxis protein  32.63 
 
 
646 aa  122  9.999999999999999e-27  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.718596  n/a   
 
 
-
 
NC_007005  Psyr_3735  PAS  38.05 
 
 
521 aa  122  9.999999999999999e-27  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.065462 
 
 
-
 
NC_008321  Shewmr4_3752  methyl-accepting chemotaxis sensory transducer  32.13 
 
 
623 aa  122  9.999999999999999e-27  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3825  methyl-accepting chemotaxis sensory transducer  32.13 
 
 
623 aa  122  9.999999999999999e-27  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0252  methyl-accepting chemotaxis sensory transducer with Cache sensor  31.53 
 
 
623 aa  122  1.9999999999999998e-26  Shewanella woodyi ATCC 51908  Bacteria  normal  0.866394  normal 
 
 
-
 
NC_007005  Psyr_2220  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  32.33 
 
 
646 aa  122  1.9999999999999998e-26  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.071358  normal  0.520396 
 
 
-
 
NC_010003  Pmob_1607  methyl-accepting chemotaxis sensory transducer  30.49 
 
 
668 aa  121  3e-26  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0877  methyl-accepting chemotaxis sensory transducer  31.99 
 
 
540 aa  121  3e-26  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.11332 
 
 
-
 
NC_008609  Ppro_3058  methyl-accepting chemotaxis sensory transducer  30.15 
 
 
518 aa  121  3e-26  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_0342  methyl-accepting chemotaxis sensory transducer  30.82 
 
 
645 aa  120  3.9999999999999996e-26  Pseudomonas putida F1  Bacteria  normal  0.860801  normal 
 
 
-
 
NC_009457  VC0395_A0365  accessory colonization factor AcfB  33.77 
 
 
626 aa  120  3.9999999999999996e-26  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0982  methyl-accepting chemotaxis sensory transducer  35.17 
 
 
663 aa  121  3.9999999999999996e-26  Marinomonas sp. MWYL1  Bacteria  normal  0.293812  normal 
 
 
-
 
NC_010506  Swoo_3605  methyl-accepting chemotaxis sensory transducer  32.44 
 
 
666 aa  120  3.9999999999999996e-26  Shewanella woodyi ATCC 51908  Bacteria  normal  0.644417  normal 
 
 
-
 
NC_011313  VSAL_II0756  methyl-accepting chemotaxis protein  31.16 
 
 
558 aa  120  3.9999999999999996e-26  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_0712  chemotaxis sensory transducer  35.8 
 
 
541 aa  120  3.9999999999999996e-26  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.0000566108  n/a   
 
 
-
 
NC_008228  Patl_3424  methyl-accepting chemotaxis sensory transducer  43.23 
 
 
674 aa  120  3.9999999999999996e-26  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.560716  n/a   
 
 
-
 
NC_008577  Shewana3_0948  methyl-accepting chemotaxis sensory transducer  39.13 
 
 
667 aa  120  3.9999999999999996e-26  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2880  putative methyl-accepting chemotaxis sensory transducer  36.18 
 
 
558 aa  121  3.9999999999999996e-26  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_0984  methyl-accepting chemotaxis sensory transducer  39.13 
 
 
667 aa  120  3.9999999999999996e-26  Shewanella sp. MR-7  Bacteria  normal  normal  0.869835 
 
 
-
 
NC_002947  PP_0320  methyl-accepting chemotaxis sensory transducer  30.61 
 
 
645 aa  120  4.9999999999999996e-26  Pseudomonas putida KT2440  Bacteria  normal  decreased coverage  0.0000409011 
 
 
-
 
NC_008740  Maqu_3809  methyl-accepting chemotaxis sensory transducer  31.82 
 
 
547 aa  120  4.9999999999999996e-26  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_1999  methyl-accepting chemotaxis sensory transducer  28.62 
 
 
405 aa  120  4.9999999999999996e-26  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3098  methyl-accepting chemotaxis protein  32.81 
 
 
642 aa  120  6e-26  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.398555  n/a   
 
 
-
 
NC_009784  VIBHAR_04784  histidine kinase  31.19 
 
 
628 aa  120  6e-26  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_2242  methyl-accepting chemotaxis sensory transducer  37.5 
 
 
664 aa  120  6e-26  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_0847  methyl-accepting chemotaxis sensory transducer  32.71 
 
 
620 aa  120  6e-26  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.566037  n/a   
 
 
-
 
NC_009483  Gura_0612  methyl-accepting chemotaxis sensory transducer  29.31 
 
 
543 aa  120  7.999999999999999e-26  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2954  methyl-accepting chemotaxis sensory transducer  32.82 
 
 
620 aa  119  9e-26  Shewanella loihica PV-4  Bacteria  decreased coverage  0.000679912  normal 
 
 
-
 
NC_010322  PputGB1_0343  methyl-accepting chemotaxis sensory transducer  29.94 
 
 
645 aa  119  9.999999999999999e-26  Pseudomonas putida GB-1  Bacteria  normal  0.675969  normal 
 
 
-
 
NC_008700  Sama_2528  putative methyl-accepting chemotaxis sensory transducer  32.44 
 
 
665 aa  119  9.999999999999999e-26  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_05097  sensor protein TorS  30.51 
 
 
542 aa  119  9.999999999999999e-26  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_3114  histidine kinase, HAMP region: chemotaxis sensory transducer  32.26 
 
 
541 aa  119  9.999999999999999e-26  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.860602  normal 
 
 
-
 
NC_013457  VEA_001073  N-acetylglucosamine regulated methyl-accepting chemotaxis protein  30.85 
 
 
628 aa  119  9.999999999999999e-26  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3045  methyl-accepting chemotaxis sensory transducer  30.45 
 
 
563 aa  119  9.999999999999999e-26  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.0000317109  n/a   
 
 
-
 
NC_008321  Shewmr4_0946  methyl-accepting chemotaxis sensory transducer  38.59 
 
 
667 aa  119  9.999999999999999e-26  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3139  methyl-accepting chemotaxis sensory transducer  37.74 
 
 
640 aa  118  1.9999999999999998e-25  Pseudomonas mendocina ymp  Bacteria  normal  0.753261  normal  0.0120166 
 
 
-
 
NC_003910  CPS_0763  methyl-accepting chemotaxis protein  37.21 
 
 
661 aa  118  1.9999999999999998e-25  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1012  hypothetical protein  33.6 
 
 
626 aa  118  1.9999999999999998e-25  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2966  histidine kinase, HAMP region: chemotaxis sensory transducer  32.81 
 
 
642 aa  118  1.9999999999999998e-25  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.249585  normal  0.113943 
 
 
-
 
NC_007492  Pfl01_0354  chemotaxis sensory transducer, Cache sensor  32.12 
 
 
630 aa  118  1.9999999999999998e-25  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0623  methyl-accepting chemotaxis sensory transducer  31.85 
 
 
647 aa  118  1.9999999999999998e-25  Pseudomonas putida F1  Bacteria  normal  0.494937  normal 
 
 
-
 
NC_013456  VEA_001822  methyl-accepting chemotaxis protein  38.04 
 
 
557 aa  119  1.9999999999999998e-25  Vibrio sp. Ex25  Bacteria  unclonable  0.00000124429  n/a   
 
 
-
 
NC_011901  Tgr7_0580  putative methyl-accepting chemotaxis sensory transducer  32.77 
 
 
679 aa  119  1.9999999999999998e-25  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_2562  methyl-accepting chemotaxis sensory transducer  31.25 
 
 
671 aa  118  1.9999999999999998e-25  Thioalkalivibrio sp. K90mix  Bacteria  normal  hitchhiker  0.0046581 
 
 
-
 
NC_008228  Patl_2247  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  32.88 
 
 
511 aa  118  1.9999999999999998e-25  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_4463  methyl-accepting chemotaxis sensory transducer  32.49 
 
 
552 aa  119  1.9999999999999998e-25  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.43301 
 
 
-
 
NC_011901  Tgr7_1674  methyl-accepting chemotaxis sensory transducer  38.34 
 
 
543 aa  118  1.9999999999999998e-25  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_0629  methyl-accepting chemotaxis sensory transducer with Cache sensor  31.85 
 
 
647 aa  118  3e-25  Pseudomonas putida GB-1  Bacteria  normal  0.624074  hitchhiker  0.000681907 
 
 
-
 
NC_008700  Sama_2609  putative methyl-accepting chemotaxis sensory transducer  37.23 
 
 
621 aa  118  3e-25  Shewanella amazonensis SB2B  Bacteria  normal  0.206567  normal 
 
 
-
 
NC_011901  Tgr7_0712  putative methyl-accepting chemotaxis sensory transducer  36.55 
 
 
624 aa  118  3e-25  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_0584  methyl-accepting chemotaxis transducer  31.85 
 
 
647 aa  117  3.9999999999999997e-25  Pseudomonas putida KT2440  Bacteria  normal  0.77697  normal  0.644217 
 
 
-
 
NC_004578  PSPTO_1648  aerotaxis receptor  36.75 
 
 
521 aa  117  3.9999999999999997e-25  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2315  histidine kinase, HAMP region: chemotaxis sensory transducer  33.7 
 
 
653 aa  117  3.9999999999999997e-25  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.967368  normal 
 
 
-
 
NC_013457  VEA_001231  methyl-accepting chemotaxis protein  29.63 
 
 
542 aa  117  3.9999999999999997e-25  Vibrio sp. Ex25  Bacteria  normal  0.554422  n/a   
 
 
-
 
NC_010501  PputW619_4887  methyl-accepting chemotaxis sensory transducer  29.75 
 
 
645 aa  117  3.9999999999999997e-25  Pseudomonas putida W619  Bacteria  normal  normal  0.658451 
 
 
-
 
NC_009438  Sputcn32_2637  methyl-accepting chemotaxis sensory transducer  32.34 
 
 
667 aa  117  3.9999999999999997e-25  Shewanella putrefaciens CN-32  Bacteria  normal  0.0295827  n/a   
 
 
-
 
NC_003910  CPS_4675  methyl-accepting chemotaxis protein  35.75 
 
 
701 aa  117  5e-25  Colwellia psychrerythraea 34H  Bacteria  normal  0.595763  n/a   
 
 
-
 
NC_008345  Sfri_2331  methyl-accepting chemotaxis sensory transducer  40.33 
 
 
538 aa  117  5e-25  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.797541  n/a   
 
 
-
 
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