| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1146 |
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| Symbol | |
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| ID | 4278047 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 1352295 |
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| End bp | 1354301 |
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| Gene Length | 2007 bp |
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| Protein Length | 668 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638133920 |
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| Product | methyl-accepting chemotaxis sensory transducer |
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| Protein accession | YP_749837 |
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| Protein GI | 114562324 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.970933 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTATA AAAACTGGCC TATAGCAAAA CAAATAGGCT CACTTGCCAT ATTGTCATCA
ATCATAATCT TTACCGCTAT GTCTTGGTTT TCCTATCAAT CGGCATCCAC AGTATTGCAT
GACAAAGCAA TTCAAGCGAT TAAATCACAA ATGCACAGTA ATACTCATTT AATTGAACTG
CAGTACAACA GTATGTTGGA CTTAGCCAAA CGAAACGCCG ATGTTTTGCG TACCTTATAT
CCAGGACAAT TCTTGATAGA GGATCGCACC GTTAAGGTGT TAGGAATTAA GACCCCAGTA
CTAGTCCATG ATAATGAGCA AATTAATAAC TCAAACAATA ACGTAGATCA CTTTTCGGAG
CTTACAGGCG GAGTCGCTAC GATATTTGCT CGCGATAATG ATGATTTTGT TCGTGTATCA
ACATCACTTA AAAAAGCTGA TGGTAATCGT GCATTAGGGA CCTATTTAGG AATTAAACAT
CCCGGTTATC AGCGTTTAGT TAAAGGCGAA GAGTATGAAG GCTACGCCAA GCTTTTTGGT
AAAGACTACA TGACAATTTA TCGGCCGGTA AAAGCTCCCG GAGGCAAAGT TATCGCTATT
CTTTTTATCG GTTTTGATAT CACCCAATCT GTTGCACAAA TCCAAAAATC ACTTAAACAA
CTGACTCTTG AAGAATCAGG TTCGTATGTC ATCATCCGAA ACTCTGATAA ACAGATTATC
TCTCATCGTG AGTTAACATC AGAAGAACCA TACAATGAAA CATTGCTTAA TGGCCTATCG
CTTGAACAAG CACTCACAGA TAAAGGGAGT TGGGTTTACA GCTCCTTGTC TGATCAAGAA
ATGTTTTCTT ATTCCGTATA TATTCCCGGT TGGAATTGGA CTTTGGTCGG GTTCGTTCCT
GAAAAGGAAT TAAGTGATGA AAGCTTAGGA ATGTTAAAAA TTAACGCCAT ATTGGCATTG
CTAGGCGTGG TGATTATTTC CGTTTTACTC TTTAATGTAA TTAATCGTGC AATTAAGCCT
TTAAAGAACC TACAGAGGCA AATAGCTAAA TTAGGCCAAG GGGATCTTTC ACAAACTTTC
GTTCAATGCC CTCAAGACAG TCACAATGAA GTTGACCACA TCACGATAAG TGTGACCCAA
ACGGCTGCAA ATTTAGCTGG ATTAATTGAG TCCTTAAAAC AGTCTGTCAT CAGCTTAGAA
AACCAAGCAA TTCTTAGCCA GCAAACATCG AAATTGAACG GTACTGAAGC AAAGTCACTG
TTAAACCAAA CAGAACAAAT TGCGACAGCT ATCGAAGAAA TGTCTTCATC TATTAAAGAT
GTCGCACAGA ATTCGAGTCA AGTTGCCCAG CAGGCGCAAG AAATTGATAG CGCATCAAAT
CAAGGACATA CACAGTTAAC TCAGGCGGTT ACAGAACTAC AATCCTTGCG TGAACAACTT
ATTCAAAGTC AAAAAAATAT TGAAAGTGTC AACAATGAAA GTCAAGCAAT CAGTCAGGTT
ACAGAAGTCA TTAATGGCAT TGCAGATCAA ACTAATTTAC TCGCCTTAAA TGCCGCGATT
GAAGCAGCTA GAGCGGGAGA CCAAGGTCGT GGTTTTGCTG TTGTTGCTGA TGAAGTTCGC
TCATTAGCAC AAAGAACACA ACGTTCAATT AGTGAGATAG GTGCGACTAT TAACAAATTA
CAACAGCAAG TAGAACACAC AGCCACACAG ATGATCCAGT GTCAGCAACT GGGAGAGTCC
TCAGCGGTAC AAGCTGATAC AGTTAATAAT CAACTCACGC TGATTAATCA TAATATCGGC
GAAATGGCTA TATTTTCGTC TAGTATAGCC AGTGCCACCA AACAGCAAAG TACAGTGGCA
GATGAAGTGT CACGCAGCTT ACATACTATT TCTACACTTG CACAAAATAG TGATGAACGG
GCAACAAAAG CGGTGAGTGA TTCAGAGCAA TTAACTAAAC TTGCGCACAG TATTAAACAA
CAAATAGGTG TATTTAACGT GGTTTAA
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| Protein sequence | MNYKNWPIAK QIGSLAILSS IIIFTAMSWF SYQSASTVLH DKAIQAIKSQ MHSNTHLIEL
QYNSMLDLAK RNADVLRTLY PGQFLIEDRT VKVLGIKTPV LVHDNEQINN SNNNVDHFSE
LTGGVATIFA RDNDDFVRVS TSLKKADGNR ALGTYLGIKH PGYQRLVKGE EYEGYAKLFG
KDYMTIYRPV KAPGGKVIAI LFIGFDITQS VAQIQKSLKQ LTLEESGSYV IIRNSDKQII
SHRELTSEEP YNETLLNGLS LEQALTDKGS WVYSSLSDQE MFSYSVYIPG WNWTLVGFVP
EKELSDESLG MLKINAILAL LGVVIISVLL FNVINRAIKP LKNLQRQIAK LGQGDLSQTF
VQCPQDSHNE VDHITISVTQ TAANLAGLIE SLKQSVISLE NQAILSQQTS KLNGTEAKSL
LNQTEQIATA IEEMSSSIKD VAQNSSQVAQ QAQEIDSASN QGHTQLTQAV TELQSLREQL
IQSQKNIESV NNESQAISQV TEVINGIADQ TNLLALNAAI EAARAGDQGR GFAVVADEVR
SLAQRTQRSI SEIGATINKL QQQVEHTATQ MIQCQQLGES SAVQADTVNN QLTLINHNIG
EMAIFSSSIA SATKQQSTVA DEVSRSLHTI STLAQNSDER ATKAVSDSEQ LTKLAHSIKQ
QIGVFNVV
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