More than 300 homologs were found in PanDaTox collection
for query gene MADE_01507 on replicon NC_011138
Organism: Alteromonas macleodii 'Deep ecotype'



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_011138  MADE_01507  putative transcriptional regulator, LuxR family protein  100 
 
 		 159 aa  333  7.999999999999999e-91  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.993499  n/a   
 
 
-
 
NC_008322  Shewmr7_3302  LuxR family transcriptional regulator  37.16 
 
 		 221 aa  94.4  5e-19  Shewanella sp. MR-7  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009901  Spea_0633  LuxR family transcriptional regulator  41.09 
 
 		 224 aa  91.3  4e-18  Shewanella pealeana ATCC 700345  Bacteria  normal  1  n/a   
 
 
-
 
NC_008700  Sama_2948  response regulator receiver protein  37.06 
 
 		 221 aa  90.9  7e-18  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.126231 
 
 
-
 
NC_007954  Sden_3096  regulatory protein, LuxR  35.81 
 
 		 222 aa  89.7  1e-17  Shewanella denitrificans OS217  Bacteria  normal  0.735562  n/a   
 
 
-
 
NC_009665  Shew185_0840  response regulator receiver protein  35.95 
 
 		 221 aa  89.4  2e-17  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
-
 
NC_009784  VIBHAR_06533  hypothetical protein  34.75 
 
 		 217 aa  89.4  2e-17  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_0863  transcriptional regulator, LuxR family  34.64 
 
 		 221 aa  88.6  3e-17  Shewanella baltica OS223  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013173  Dbac_2905  transcriptional regulator, LuxR family  36.09 
 
 		 335 aa  88.6  3e-17  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  1  n/a   
 
 
-
 
NC_009052  Sbal_3500  response regulator receiver protein  35.29 
 
 		 249 aa  88.6  3e-17  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_009997  Sbal195_0875  LuxR family transcriptional regulator  35.29 
 
 		 221 aa  88.6  3e-17  Shewanella baltica OS195  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007963  Csal_3306  LuxR family transcriptional regulator  33.97 
 
 		 238 aa  88.2  5e-17  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_009456  VC0395_0287  LuxR family transcriptional regulator  33.57 
 
 		 224 aa  87.8  5e-17  Vibrio cholerae O395  Bacteria  normal  0.1053  n/a   
 
 
-
 
NC_010506  Swoo_3887  LuxR family transcriptional regulator  40 
 
 		 221 aa  87.4  7e-17  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.00000207134 
 
 
-
 
NC_009438  Sputcn32_3137  response regulator receiver protein  34.64 
 
 		 209 aa  87.4  7e-17  Shewanella putrefaciens CN-32  Bacteria  normal  1  n/a   
 
 
-
 
NC_008345  Sfri_0560  transcriptional regulator, LuxR family protein  35.82 
 
 		 222 aa  87.4  8e-17  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_009831  Ssed_3945  LuxR family transcriptional regulator  40 
 
 		 221 aa  87  9e-17  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00801334  normal  0.811932 
 
 
-
 
NC_004347  SO_0864  LuxR family transcriptional regulator  34.97 
 
 		 255 aa  85.5  2e-16  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_3414  LuxR family transcriptional regulator  34.97 
 
 		 221 aa  85.5  2e-16  Shewanella sp. ANA-3  Bacteria  normal  0.295313  normal  1 
 
 
-
 
NC_009784  VIBHAR_05152  protein-glutamate methylesterase  34.03 
 
 		 222 aa  85.1  3e-16  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_0720  LuxR family transcriptional regulator  34.97 
 
 		 221 aa  85.1  4e-16  Shewanella sp. MR-4  Bacteria  normal  0.0333677  normal  1 
 
 
-
 
NC_008576  Mmc1_3704  LuxR family transcriptional regulator  33.83 
 
 		 220 aa  84.7  5e-16  Magnetococcus sp. MC-1  Bacteria  normal  0.0339608  normal  1 
 
 
-
 
NC_013889  TK90_1248  transcriptional regulator, LuxR family  34.93 
 
 		 232 aa  84.3  7e-16  Thioalkalivibrio sp. K90mix  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013457  VEA_001275  transcriptional regulator VpsT  38.26 
 
 		 222 aa  82  0.000000000000003  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_009092  Shew_3194  LuxR family transcriptional regulator  37.9 
 
 		 220 aa  82  0.000000000000003  Shewanella loihica PV-4  Bacteria  normal  0.0232917  normal  0.227391 
 
 
-
 
NC_013456  VEA_002362  DNA-binding HTH domain-containing protein  33.33 
 
 		 214 aa  80.9  0.000000000000007  Vibrio sp. Ex25  Bacteria  normal  0.0501055  n/a   
 
 
-
 
NC_010506  Swoo_0644  LuxR family transcriptional regulator  37.59 
 
 		 221 aa  79.7  0.00000000000001  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0140532  unclonable  0.00000001613 
 
 
-
 
NC_009783  VIBHAR_03706  hypothetical protein  32 
 
 		 214 aa  79.3  0.00000000000002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011312  VSAL_I2858  probable CsgAB operon transcriptional regulatory protein  31.29 
 
 		 215 aa  78.2  0.00000000000004  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.256874  n/a   
 
 
-
 
NC_007912  Sde_0994  response regulator receiver domain-containing protein  33.33 
 
 		 221 aa  77.4  0.00000000000007  Saccharophagus degradans 2-40  Bacteria  normal  0.16925  normal  1 
 
 
-
 
NC_013093  Amir_3004  two component transcriptional regulator, LuxR family  37.16 
 
 		 223 aa  77.4  0.00000000000008  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0522265  n/a   
 
 
-
 
NC_009784  VIBHAR_05153  hypothetical protein  31.62 
 
 		 218 aa  77  0.0000000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013457  VEA_001276  transcriptional regulator VpsT  30.65 
 
 		 210 aa  76.3  0.0000000000002  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_013093  Amir_3219  two component transcriptional regulator, LuxR family  33.1 
 
 		 208 aa  75.1  0.0000000000004  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_013510  Tcur_1300  two component transcriptional regulator, LuxR family  36.5 
 
 		 215 aa  75.1  0.0000000000004  Thermomonospora curvata DSM 43183  Bacteria  normal  0.145336  n/a   
 
 
-
 
NC_011094  SeSA_A1208  DNA-binding transcriptional regulator CsgD  31.39 
 
 		 216 aa  74.3  0.0000000000007  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.316434  normal  0.419874 
 
 
-
 
NC_011083  SeHA_C1253  DNA-binding transcriptional regulator CsgD  31.39 
 
 		 216 aa  74.3  0.0000000000007  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  1  normal  0.705931 
 
 
-
 
NC_011080  SNSL254_A1238  DNA-binding transcriptional regulator CsgD  31.39 
 
 		 216 aa  74.3  0.0000000000007  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.147361  normal  1 
 
 
-
 
NC_011149  SeAg_B2048  DNA-binding transcriptional regulator CsgD  31.39 
 
 		 216 aa  74.3  0.0000000000007  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0804096  n/a   
 
 
-
 
NC_011205  SeD_A2231  DNA-binding transcriptional regulator CsgD  31.39 
 
 		 216 aa  74.3  0.0000000000007  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.750523  normal  0.99411 
 
 
-
 
NC_013739  Cwoe_2472  two component transcriptional regulator, LuxR family  34.85 
 
 		 221 aa  73.9  0.0000000000008  Conexibacter woesei DSM 14684  Bacteria  normal  0.0113125  hitchhiker  0.00367669 
 
 
-
 
NC_010498  EcSMS35_2093  DNA-binding transcriptional regulator CsgD  32.33 
 
 		 190 aa  73.9  0.0000000000008  Escherichia coli SMS-3-5  Bacteria  normal  1  normal  0.661259 
 
 
-
 
NC_011353  ECH74115_1419  DNA-binding transcriptional regulator CsgD  32.33 
 
 		 216 aa  73.6  0.0000000000009  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  1  normal  0.132272 
 
 
-
 
NC_009801  EcE24377A_1159  DNA-binding transcriptional regulator CsgD  32.33 
 
 		 216 aa  73.6  0.0000000000009  Escherichia coli E24377A  Bacteria  normal  1  n/a   
 
 
-
 
CP001509  ECD_01037  DNA-binding transcriptional activator in two-component regulatory system  32.33 
 
 		 216 aa  73.2  0.000000000001  Escherichia coli BL21(DE3)  Bacteria  normal  1  n/a   
 
 
-
 
CP001637  EcDH1_2605  transcriptional regulator, LuxR family  32.33 
 
 		 216 aa  73.6  0.000000000001  Escherichia coli DH1  Bacteria  normal  0.196673  n/a   
 
 
-
 
NC_012892  B21_01044  hypothetical protein  32.33 
 
 		 216 aa  73.2  0.000000000001  Escherichia coli BL21  Bacteria  normal  1  n/a   
 
 
-
 
NC_010468  EcolC_2559  DNA-binding transcriptional regulator CsgD  32.33 
 
 		 216 aa  73.2  0.000000000001  Escherichia coli ATCC 8739  Bacteria  normal  0.980478  normal  0.382247 
 
 
-
 
NC_013595  Sros_0609  response regulator receiver protein  33.88 
 
 		 218 aa  73.6  0.000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013441  Gbro_4119  response regulator receiver  33.12 
 
 		 230 aa  73.2  0.000000000001  Gordonia bronchialis DSM 43247  Bacteria  normal  1  n/a   
 
 
-
 
NC_009800  EcHS_A1158  DNA-binding transcriptional regulator CsgD  32.33 
 
 		 216 aa  73.2  0.000000000001  Escherichia coli HS  Bacteria  normal  0.354651  n/a   
 
 
-
 
NC_013235  Namu_0480  two component transcriptional regulator, LuxR family  33.81 
 
 		 214 aa  72.4  0.000000000002  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013510  Tcur_4334  transcriptional regulator, LuxR family  34.45 
 
 		 160 aa  72.4  0.000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
-
 
NC_009921  Franean1_3846  two component LuxR family transcriptional regulator  33.88 
 
 		 249 aa  71.2  0.000000000005  Frankia sp. EAN1pec  Bacteria  normal  0.525033  normal  0.770826 
 
 
-
 
NC_009436  Ent638_1556  DNA-binding transcriptional regulator CsgD  34.23 
 
 		 216 aa  70.9  0.000000000006  Enterobacter sp. 638  Bacteria  normal  0.417219  normal  0.369793 
 
 
-
 
NC_014151  Cfla_2842  two component transcriptional regulator, LuxR family  32.45 
 
 		 226 aa  69.7  0.00000000001  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.622781  decreased coverage  0.00305681 
 
 
-
 
NC_014158  Tpau_1410  two component transcriptional regulator, LuxR family  33.08 
 
 		 222 aa  69.3  0.00000000002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.46664  n/a   
 
 
-
 
NC_013595  Sros_3998  response regulator receiver protein  32.85 
 
 		 233 aa  69.3  0.00000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.363745  normal  0.263649 
 
 
-
 
NC_013947  Snas_0607  two component transcriptional regulator, LuxR family  37.3 
 
 		 216 aa  68.9  0.00000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008009  Acid345_0972  two component LuxR family transcriptional regulator  33.6 
 
 		 227 aa  68.9  0.00000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.299836  normal  0.0302219 
 
 
-
 
NC_013530  Xcel_1619  two component transcriptional regulator, LuxR family  34.15 
 
 		 234 aa  68.6  0.00000000003  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_4115  response regulator receiver protein  35.2 
 
 		 216 aa  68.2  0.00000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  0.071707  normal  0.0608108 
 
 
-
 
NC_013595  Sros_4468  response regulator receiver protein  34.71 
 
 		 219 aa  68.2  0.00000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0876299  normal  0.32237 
 
 
-
 
NC_009483  Gura_2620  response regulator receiver protein  32.09 
 
 		 239 aa  68.2  0.00000000005  Geobacter uraniireducens Rf4  Bacteria  normal  0.649971  n/a   
 
 
-
 
NC_013170  Ccur_01320  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  34.81 
 
 		 261 aa  67.8  0.00000000006  Cryptobacterium curtum DSM 15641  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008146  Mmcs_1619  two component LuxR family transcriptional regulator  33.86 
 
 		 163 aa  67.8  0.00000000006  Mycobacterium sp. MCS  Bacteria  normal  0.113726  n/a   
 
 
-
 
NC_008705  Mkms_1644  two component LuxR family transcriptional regulator  33.86 
 
 		 163 aa  67.8  0.00000000006  Mycobacterium sp. KMS  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009077  Mjls_1592  two component LuxR family transcriptional regulator  33.86 
 
 		 162 aa  67.4  0.00000000007  Mycobacterium sp. JLS  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009664  Krad_2599  two component transcriptional regulator, LuxR family  33.06 
 
 		 211 aa  67.4  0.00000000008  Kineococcus radiotolerans SRS30216  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  33.58 
 
 		 225 aa  67  0.00000000009  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  0.114252 
 
 
-
 
NC_008345  Sfri_0602  transcriptional regulator, LuxR family protein  30.71 
 
 		 210 aa  67.4  0.00000000009  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.126322  n/a   
 
 
-
 
NC_009953  Sare_4860  two component LuxR family transcriptional regulator  35.54 
 
 		 219 aa  67.4  0.00000000009  Salinispora arenicola CNS-205  Bacteria  normal  0.452521  normal  0.0798716 
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  35.2 
 
 		 229 aa  67  0.0000000001  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_6306  response regulator receiver protein  33.06 
 
 		 209 aa  67  0.0000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0259699  normal  0.0492304 
 
 
-
 
NC_013172  Bfae_11600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  34.45 
 
 		 225 aa  67  0.0000000001  Brachybacterium faecium DSM 4810  Bacteria  decreased coverage  0.00120804  n/a   
 
 
-
 
NC_013501  Rmar_1005  two component transcriptional regulator, LuxR family  34.78 
 
 		 211 aa  66.6  0.0000000001  Rhodothermus marinus DSM 4252  Bacteria  normal  1  n/a   
 
 
-
 
NC_009457  VC0395_A2814  LuxR family transcriptional regulator  32.48 
 
 		 214 aa  67  0.0000000001  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_013174  Jden_2514  two component transcriptional regulator, LuxR family  31.13 
 
 		 230 aa  66.2  0.0000000002  Jonesia denitrificans DSM 20603  Bacteria  normal  0.135771  normal  0.887193 
 
 
-
 
NC_013595  Sros_7377  response regulator receiver protein  35.04 
 
 		 216 aa  66.2  0.0000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.92051  normal  1 
 
 
-
 
NC_009921  Franean1_1652  two component LuxR family transcriptional regulator  30.72 
 
 		 217 aa  65.9  0.0000000002  Frankia sp. EAN1pec  Bacteria  normal  0.495895  normal  0.106337 
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  32.59 
 
 		 224 aa  65.9  0.0000000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_009953  Sare_1782  two component LuxR family transcriptional regulator  32.09 
 
 		 230 aa  66.2  0.0000000002  Salinispora arenicola CNS-205  Bacteria  normal  1  hitchhiker  0.0025253 
 
 
-
 
NC_013093  Amir_2811  two component transcriptional regulator, LuxR family  34.92 
 
 		 217 aa  66.2  0.0000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  0.206772  n/a   
 
 
-
 
NC_009664  Krad_2518  two component transcriptional regulator, LuxR family  32 
 
 		 225 aa  66.2  0.0000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013521  Sked_21600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  31.2 
 
 		 222 aa  66.2  0.0000000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.49613  normal  1 
 
 
-
 
NC_013131  Caci_8900  two component transcriptional regulator, LuxR family  36.29 
 
 		 221 aa  65.9  0.0000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.967084  normal  1 
 
 
-
 
NC_013159  Svir_39200  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  33.06 
 
 		 218 aa  65.9  0.0000000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  0.254077 
 
 
-
 
NC_009380  Strop_2458  response regulator receiver  34.71 
 
 		 220 aa  65.5  0.0000000003  Salinispora tropica CNB-440  Bacteria  normal  0.0554598  normal  1 
 
 
-
 
NC_012850  Rleg_4328  transcriptional regulator, LuxR family  33.08 
 
 		 260 aa  65.1  0.0000000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  decreased coverage  0.00000000127099  normal  0.0225245 
 
 
-
 
NC_012857  Rpic12D_3598  two component transcriptional regulator, LuxR family  29.14 
 
 		 218 aa  65.1  0.0000000004  Ralstonia pickettii 12D  Bacteria  normal  0.329097  normal  0.731815 
 
 
-
 
NC_010678  Rpic_4675  two component transcriptional regulator, LuxR family  29.14 
 
 		 218 aa  65.1  0.0000000004  Ralstonia pickettii 12J  Bacteria  normal  0.760252  normal  1 
 
 
-
 
NC_008255  CHU_1317  response regulator  30 
 
 		 220 aa  65.1  0.0000000004  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.500574  normal  0.0503905 
 
 
-
 
NC_007404  Tbd_0670  two component LuxR family transcriptional regulator  31.88 
 
 		 265 aa  64.7  0.0000000005  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.998369  normal  0.706802 
 
 
-
 
NC_014248  Aazo_0236  LuxR family two component transcriptional regulator  35.4 
 
 		 218 aa  64.7  0.0000000005  'Nostoc azollae' 0708  Bacteria  normal  1  n/a   
 
 
-
 
NC_014151  Cfla_0278  two component transcriptional regulator, LuxR family  32.58 
 
 		 225 aa  64.7  0.0000000005  Cellulomonas flavigena DSM 20109  Bacteria  normal  1  hitchhiker  0.000789071 
 
 
-
 
NC_009380  Strop_1796  response regulator receiver  32.09 
 
 		 230 aa  64.3  0.0000000006  Salinispora tropica CNB-440  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008255  CHU_0105  two component LuxR family transcriptional regulator  39.39 
 
 		 215 aa  63.9  0.0000000007  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0303042  normal  0.309888 
 
 
-
 
NC_013131  Caci_0683  two component transcriptional regulator, LuxR family  31.88 
 
 		 234 aa  63.2  0.000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.344925  normal  1 
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  31.34 
 
 		 220 aa  63.2  0.000000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  35 
 
 		 218 aa  63.2  0.000000001  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
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