| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3887 |
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| Symbol | |
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| ID | 6118236 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4739180 |
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| End bp | 4739845 |
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| Gene Length | 666 bp |
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| Protein Length | 221 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641635449 |
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| Product | LuxR family transcriptional regulator |
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| Protein accession | YP_001762240 |
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| Protein GI | 170728214 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000207134 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTAAAG TAGATGAGTT GGTCTTTCTT CATCAGGTAT CGACACCATG TAACTTAGCA
ATTTTAGCTG AGTCTATCGG ATTGAAGACA CGGATTGTTA AGCAGGTTTC TGAGCTTGAA
CCACTCAGCG ATCGTAATAG TTTCTACCTC GTGGGTCAGG AGGGCGCAGC CCTAGACAAT
AGAGGGATCC CTCTGTTGGC GATTCGTCTT GTTTCCCACG TGCCTGTTGC CCTCTACCAA
GTCGATAGAA AAAAACTCGA CCCAGCCTCT GCATTGCTGC TGGGGATCCG TGGGTTGCTC
TATTCAGATC AGCGTATGGA TCTGATGTTG ACTGGCTTAA GAAAGATGGT GGCGGATGAG
CTTTGGTACG ATCGTACCTT GATTAGCAAG ATGTTCCGTC AACTGGTTGA TCGTTTAGAG
ACCAGTGATG ACTACTCCCA AGATGCCGAA GAGATACTGC AGGTATTGAC TAAGCGGGAG
CGAACCATCA TTCAATTGGT TTCAAGTGGC GCTAGAAATA GGGAGATTGC TGATAATTTA
TGTATCAGCG AACATACGGT TAAAGCACAT ATCTCCTCGA TTTTCAGAAA GACACACTCT
CGTAATCGTG TTGAACTGCT TAGGTGGGCA CAGACCTACG GCGATCATCT GGCACTGTGT
TCTTAA
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| Protein sequence | MSKVDELVFL HQVSTPCNLA ILAESIGLKT RIVKQVSELE PLSDRNSFYL VGQEGAALDN
RGIPLLAIRL VSHVPVALYQ VDRKKLDPAS ALLLGIRGLL YSDQRMDLML TGLRKMVADE
LWYDRTLISK MFRQLVDRLE TSDDYSQDAE EILQVLTKRE RTIIQLVSSG ARNREIADNL
CISEHTVKAH ISSIFRKTHS RNRVELLRWA QTYGDHLALC S
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