| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002362 |
|---|
| Symbol | |
|---|
| ID | 8556057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | - |
|---|
| Start bp | 830681 |
|---|
| End bp | 831325 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 646405420 |
|---|
| Product | DNA-binding HTH domain-containing protein |
|---|
| Protein accession | YP_003284989 |
|---|
| Protein GI | 262393135 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0501055 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGAAAGT CGGCTTACGC AAGAAAGCTA TTTCTGATCA GTATGGAAGA TAATGCGCAA
AAAAAGGTGG CAGCACTCGA AAAGTACATT GATATGAGCA TCCCGGTGAT TTCAACCGAA
GCACTCATGG AAGCTAAGCC ACAGCATCGT AATAAAATCC TACTGATCGA CTTCAGTGAA
CATAAATCAT TCGTTCAATC GATCAAAAAC TTACCGCTGG TATGGAAGAA CTTTGAAACC
GTTGTGTTCA ATGTCCCTAA AAGGCTGACC ACGGATGAGC TTCTTTCATT TGGTCAATTA
AAGGGGCTGT TCTATTCCGA AGATAAGCTA GAGCAAATTG GAGAAGGATT AAAAGGCATT
GTTAACGGTC AAAACTGGCT GCCGCGTAAT GTAACCAGTC AACTTTTACA CTATTACCGT
AACGTCATTA ATACTCATAC TGCCCCAGCC ACGGTAGACC TAACCATTCG CGAGCTGCAA
GTACTGCGTT GCTTGCAAGC TGGCGCATCG AACAGCCAAA TGGCCGAGGA ATTATTTGTC
AGTGAATTCA CCATCAAATC GCACTTGTAT CAGATATTCA AAAAGCTATC AGTGAAGAAT
CGCGTTCAGG CTATCGCGTG GGCAGATCAA AACTTAATGT CATGA
|
|---|
| Protein sequence | MRKSAYARKL FLISMEDNAQ KKVAALEKYI DMSIPVISTE ALMEAKPQHR NKILLIDFSE
HKSFVQSIKN LPLVWKNFET VVFNVPKRLT TDELLSFGQL KGLFYSEDKL EQIGEGLKGI
VNGQNWLPRN VTSQLLHYYR NVINTHTAPA TVDLTIRELQ VLRCLQAGAS NSQMAEELFV
SEFTIKSHLY QIFKKLSVKN RVQAIAWADQ NLMS
|
|---|
| |