More than 300 homologs were found in PanDaTox collection
for query gene Tbd_0670 on replicon NC_007404
Organism: Thiobacillus denitrificans ATCC 25259



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007404  Tbd_0670  two component LuxR family transcriptional regulator  100 
 
 
265 aa  539  9.999999999999999e-153  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.998369  normal  0.706802 
 
 
-
 
NC_007614  Nmul_A2674  two component LuxR family transcriptional regulator  33.33 
 
 
203 aa  91.3  2e-17  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.125422  n/a   
 
 
-
 
NC_013131  Caci_2656  two component transcriptional regulator, LuxR family  27.75 
 
 
226 aa  89  8e-17  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.161573  normal 
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  30.61 
 
 
224 aa  88.2  1e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_009972  Haur_4778  two component LuxR family transcriptional regulator  32.26 
 
 
208 aa  86.7  4e-16  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.00000269792  n/a   
 
 
-
 
NC_013205  Aaci_0516  two component transcriptional regulator, LuxR family  28.77 
 
 
231 aa  86.3  5e-16  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_04500  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  29.46 
 
 
244 aa  85.5  8e-16  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_4051  two component transcriptional regulator, LuxR family  28.77 
 
 
225 aa  84.3  0.000000000000002  Actinosynnema mirum DSM 43827  Bacteria  decreased coverage  0.00308286  n/a   
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  26.05 
 
 
211 aa  82.4  0.000000000000006  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1284  two component LuxR family transcriptional regulator  27.44 
 
 
209 aa  82.8  0.000000000000006  Opitutus terrae PB90-1  Bacteria  normal  0.479266  normal 
 
 
-
 
NC_010571  Oter_3372  two component LuxR family transcriptional regulator  28.5 
 
 
212 aa  80.1  0.00000000000003  Opitutus terrae PB90-1  Bacteria  normal  normal  0.383896 
 
 
-
 
NC_013947  Snas_5595  two component transcriptional regulator, LuxR family  26.89 
 
 
215 aa  80.5  0.00000000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_2348  two component LuxR family transcriptional regulator  34.09 
 
 
219 aa  80.1  0.00000000000004  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.524488 
 
 
-
 
NC_013174  Jden_2514  two component transcriptional regulator, LuxR family  29.72 
 
 
230 aa  80.1  0.00000000000004  Jonesia denitrificans DSM 20603  Bacteria  normal  0.135771  normal  0.887193 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  27.27 
 
 
218 aa  79.7  0.00000000000004  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_009455  DehaBAV1_0632  two component LuxR family transcriptional regulator  30.14 
 
 
224 aa  79.7  0.00000000000004  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00385785  n/a   
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  25.84 
 
 
222 aa  79.3  0.00000000000006  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal 
 
 
-
 
NC_013595  Sros_4577  response regulator receiver protein  24.88 
 
 
223 aa  79  0.00000000000007  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.172592 
 
 
-
 
NC_013172  Bfae_11600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  27.06 
 
 
225 aa  79  0.00000000000007  Brachybacterium faecium DSM 4810  Bacteria  decreased coverage  0.00120804  n/a   
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  27.7 
 
 
216 aa  79  0.00000000000008  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_0621  two component LuxR family transcriptional regulator  28.04 
 
 
212 aa  78.2  0.0000000000001  Caulobacter sp. K31  Bacteria  normal  normal  0.881689 
 
 
-
 
NC_013173  Dbac_1038  two component transcriptional regulator, LuxR family  29.41 
 
 
215 aa  78.2  0.0000000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.942109  n/a   
 
 
-
 
NC_002936  DET0663  LuxR family DNA-binding response regulator  29.45 
 
 
224 aa  77.4  0.0000000000002  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0697  LuxR family DNA-binding response regulator  29.45 
 
 
224 aa  77.4  0.0000000000002  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_2463  response regulator receiver  25.74 
 
 
217 aa  77.8  0.0000000000002  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_0972  two component LuxR family transcriptional regulator  28.57 
 
 
227 aa  77.4  0.0000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.299836  normal  0.0302219 
 
 
-
 
NC_010717  PXO_04459  two-component system regulatory protein  27.7 
 
 
213 aa  77.4  0.0000000000002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_2415  two component LuxR family transcriptional regulator  25.74 
 
 
217 aa  77.8  0.0000000000002  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_1929  two component transcriptional regulator, LuxR family  25.7 
 
 
209 aa  76.6  0.0000000000003  Cyanothece sp. PCC 7425  Bacteria  normal  0.142226  normal 
 
 
-
 
NC_013552  DhcVS_601  DNA-binding response regulator, LuxR family  29.45 
 
 
224 aa  76.6  0.0000000000004  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP1981  transcriptional regulatory protein DegU, putative  25 
 
 
218 aa  76.3  0.0000000000005  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  31.21 
 
 
227 aa  76.3  0.0000000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_007412  Ava_C0116  two component LuxR family transcriptional regulator  23.81 
 
 
209 aa  76.3  0.0000000000005  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0679  two component LuxR family transcriptional regulator  26.44 
 
 
213 aa  76.3  0.0000000000005  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_3507  two component transcriptional regulator, LuxR family  27.96 
 
 
213 aa  76.3  0.0000000000005  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.892641  n/a   
 
 
-
 
NC_011988  Avi_5384  two component response regulator  26.17 
 
 
216 aa  76.3  0.0000000000006  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_2325  two component transcriptional regulator, LuxR family  24.19 
 
 
228 aa  75.9  0.0000000000006  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_1600  two component LuxR family transcriptional regulator  26.64 
 
 
207 aa  75.9  0.0000000000007  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_1241  two component LuxR family transcriptional regulator  29.95 
 
 
216 aa  75.9  0.0000000000007  Shewanella baltica OS155  Bacteria  decreased coverage  0.0000399601  n/a   
 
 
-
 
NC_013739  Cwoe_3988  two component transcriptional regulator, LuxR family  24.4 
 
 
228 aa  75.5  0.0000000000008  Conexibacter woesei DSM 14684  Bacteria  normal  0.0354189  normal  0.736565 
 
 
-
 
NC_007348  Reut_B5451  two component LuxR family transcriptional regulator  27.98 
 
 
223 aa  75.5  0.0000000000008  Ralstonia eutropha JMP134  Bacteria  normal  0.761649  n/a   
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  30.83 
 
 
226 aa  75.5  0.0000000000008  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_014210  Ndas_1477  two component transcriptional regulator, LuxR family  29.6 
 
 
234 aa  75.5  0.0000000000008  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.594471  normal 
 
 
-
 
NC_008825  Mpe_A3043  LuxR family DNA binding response regulator  27.04 
 
 
209 aa  75.5  0.0000000000008  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_6211  response regulator receiver protein  27.52 
 
 
239 aa  74.7  0.000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.377169 
 
 
-
 
NC_012669  Bcav_4002  two component transcriptional regulator, LuxR family  27.44 
 
 
222 aa  74.7  0.000000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.947887  normal  0.770727 
 
 
-
 
NC_013595  Sros_4115  response regulator receiver protein  27.14 
 
 
216 aa  75.1  0.000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.071707  normal  0.0608108 
 
 
-
 
NC_011663  Sbal223_3070  two component transcriptional regulator, LuxR family  30.46 
 
 
216 aa  74.7  0.000000000001  Shewanella baltica OS223  Bacteria  decreased coverage  0.000689776  unclonable  0.00000000000283062 
 
 
-
 
NC_009972  Haur_2171  two component LuxR family transcriptional regulator  26.5 
 
 
218 aa  74.7  0.000000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0762379  n/a   
 
 
-
 
NC_013757  Gobs_2015  two component transcriptional regulator, LuxR family  26.44 
 
 
232 aa  75.1  0.000000000001  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.706703  n/a   
 
 
-
 
NC_009253  Dred_2108  two component LuxR family transcriptional regulator  26.5 
 
 
218 aa  75.1  0.000000000001  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  25.36 
 
 
223 aa  75.1  0.000000000001  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0556432 
 
 
-
 
NC_013170  Ccur_01320  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  25.24 
 
 
261 aa  74.3  0.000000000002  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_0110  two component transcriptional regulator, LuxR family  27.09 
 
 
222 aa  74.3  0.000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_3748  two component transcriptional regulator, LuxR family  24.67 
 
 
236 aa  74.3  0.000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  27.59 
 
 
226 aa  74.3  0.000000000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_1633  two component transcriptional regulator, LuxR family  28.71 
 
 
241 aa  73.9  0.000000000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.457155  n/a   
 
 
-
 
NC_009665  Shew185_1285  two component LuxR family transcriptional regulator  29.95 
 
 
216 aa  74.3  0.000000000002  Shewanella baltica OS185  Bacteria  decreased coverage  0.000337392  n/a   
 
 
-
 
NC_008255  CHU_1266  two-component response regulator  25.12 
 
 
227 aa  74.7  0.000000000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.847879  normal  0.913346 
 
 
-
 
NC_011772  BCG9842_B3078  DNA-binding response regulator, LuxR family  25.52 
 
 
213 aa  74.3  0.000000000002  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.000000185138 
 
 
-
 
NC_013235  Namu_0480  two component transcriptional regulator, LuxR family  24.88 
 
 
214 aa  74.3  0.000000000002  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_3643  two component LuxR family transcriptional regulator  26.9 
 
 
215 aa  74.3  0.000000000002  Nocardioides sp. JS614  Bacteria  normal  0.516516  n/a   
 
 
-
 
NC_013739  Cwoe_2472  two component transcriptional regulator, LuxR family  28.93 
 
 
221 aa  73.9  0.000000000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.0113125  hitchhiker  0.00367669 
 
 
-
 
NC_011772  BCG9842_B3849  DNA-binding response regulator  25.76 
 
 
210 aa  73.9  0.000000000002  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000308683  hitchhiker  0.000000000350245 
 
 
-
 
NC_009767  Rcas_4227  two component LuxR family transcriptional regulator  27.8 
 
 
213 aa  74.3  0.000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.624898 
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  22.22 
 
 
224 aa  74.3  0.000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  31.03 
 
 
226 aa  74.3  0.000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  29.79 
 
 
226 aa  74.3  0.000000000002  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_011071  Smal_1099  two component transcriptional regulator, LuxR family  27.23 
 
 
213 aa  73.9  0.000000000002  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_1563  DNA-binding response regulator  25.76 
 
 
210 aa  73.6  0.000000000003  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.0000000942452  n/a   
 
 
-
 
NC_003909  BCE_2293  LuxR family DNA-binding response regulator  26.04 
 
 
211 aa  73.6  0.000000000003  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS1348  DNA-binding response regulator  25.76 
 
 
210 aa  73.6  0.000000000003  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.0000440829  n/a   
 
 
-
 
NC_005957  BT9727_1322  response regulator  25.76 
 
 
210 aa  73.6  0.000000000003  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  7.30192e-17  n/a   
 
 
-
 
NC_009997  Sbal195_1319  two component LuxR family transcriptional regulator  29.44 
 
 
216 aa  73.6  0.000000000003  Shewanella baltica OS195  Bacteria  normal  0.0542522  decreased coverage  0.000972679 
 
 
-
 
NC_010184  BcerKBAB4_1363  two component LuxR family transcriptional regulator  25.76 
 
 
210 aa  73.6  0.000000000003  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.0039551  n/a   
 
 
-
 
NC_011658  BCAH187_A1601  DNA-binding response regulator  25.76 
 
 
210 aa  73.6  0.000000000003  Bacillus cereus AH187  Bacteria  unclonable  0.00000000136266  n/a   
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  25.84 
 
 
242 aa  73.6  0.000000000003  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_007530  GBAA_1457  DNA-binding response regulator  25.76 
 
 
210 aa  73.6  0.000000000003  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.0000538049  n/a   
 
 
-
 
NC_013174  Jden_1873  two component transcriptional regulator, LuxR family  26.57 
 
 
233 aa  73.9  0.000000000003  Jonesia denitrificans DSM 20603  Bacteria  normal  0.145213  normal  0.385799 
 
 
-
 
NC_009921  Franean1_1971  two component LuxR family transcriptional regulator  25.45 
 
 
216 aa  73.9  0.000000000003  Frankia sp. EAN1pec  Bacteria  normal  0.356635  normal  0.773651 
 
 
-
 
NC_009441  Fjoh_4628  two component LuxR family transcriptional regulator  26.76 
 
 
219 aa  73.6  0.000000000003  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2130  DNA-binding response regulator, LuxR family  25.25 
 
 
222 aa  73.2  0.000000000004  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3936  two component LuxR family transcriptional regulator  26.24 
 
 
213 aa  73.2  0.000000000004  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00507176  n/a   
 
 
-
 
NC_007298  Daro_0834  LuxR response regulator receiver  24.41 
 
 
221 aa  73.2  0.000000000004  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.0179337 
 
 
-
 
NC_009921  Franean1_3185  two component LuxR family transcriptional regulator  26.13 
 
 
223 aa  73.6  0.000000000004  Frankia sp. EAN1pec  Bacteria  normal  0.704721  normal 
 
 
-
 
NC_013131  Caci_5428  two component transcriptional regulator, LuxR family  28.71 
 
 
201 aa  73.2  0.000000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.358603 
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  24.4 
 
 
216 aa  73.2  0.000000000004  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0199  response regulator receiver protein  27.01 
 
 
213 aa  73.2  0.000000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_4648  two component LuxR family transcriptional regulator  26.15 
 
 
219 aa  73.2  0.000000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1321  response regulator  25.76 
 
 
210 aa  72.8  0.000000000005  Bacillus cereus E33L  Bacteria  hitchhiker  0.00000332221  n/a   
 
 
-
 
NC_009664  Krad_1998  two component transcriptional regulator, LuxR family  27.36 
 
 
225 aa  72.8  0.000000000005  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.12496  normal 
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  27.27 
 
 
225 aa  72.8  0.000000000006  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_011725  BCB4264_A2245  DNA-binding response regulator, LuxR family  25 
 
 
213 aa  72.4  0.000000000006  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5066  LuxR response regulator receiver  27.06 
 
 
217 aa  72.8  0.000000000006  Ralstonia eutropha JMP134  Bacteria  normal  0.822528  n/a   
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  25.49 
 
 
219 aa  72.8  0.000000000006  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal 
 
 
-
 
NC_013124  Afer_0180  two component transcriptional regulator, LuxR family  29.06 
 
 
216 aa  72.4  0.000000000006  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.245465  n/a   
 
 
-
 
NC_013172  Bfae_20460  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  26.98 
 
 
229 aa  72.4  0.000000000006  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0212792  n/a   
 
 
-
 
NC_009953  Sare_4214  two component LuxR family transcriptional regulator  26.57 
 
 
228 aa  72.4  0.000000000007  Salinispora arenicola CNS-205  Bacteria  normal  0.0601429  normal  0.0532868 
 
 
-
 
NC_012034  Athe_2627  two component transcriptional regulator, LuxR family  27.57 
 
 
211 aa  72.4  0.000000000007  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  28.43 
 
 
218 aa  72.4  0.000000000007  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
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