More than 300 homologs were found in PanDaTox collection
for query gene VEA_001275 on replicon NC_013457
Organism: Vibrio sp. Ex25



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013457  VEA_001275  transcriptional regulator VpsT  100 
 
 		 222 aa  452  1.0000000000000001e-126  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_009784  VIBHAR_05152  protein-glutamate methylesterase  76.58 
 
 		 222 aa  345  2e-94  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009456  VC0395_0287  LuxR family transcriptional regulator  46.58 
 
 		 224 aa  196  3e-49  Vibrio cholerae O395  Bacteria  normal  0.1053  n/a   
 
 
-
 
NC_011312  VSAL_I2858  probable CsgAB operon transcriptional regulatory protein  38.58 
 
 		 215 aa  133  1.9999999999999998e-30  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.256874  n/a   
 
 
-
 
CP001637  EcDH1_2605  transcriptional regulator, LuxR family  37.5 
 
 		 216 aa  129  4.0000000000000003e-29  Escherichia coli DH1  Bacteria  normal  0.196673  n/a   
 
 
-
 
NC_010468  EcolC_2559  DNA-binding transcriptional regulator CsgD  37.5 
 
 		 216 aa  128  6e-29  Escherichia coli ATCC 8739  Bacteria  normal  0.980478  normal  0.382247 
 
 
-
 
NC_009800  EcHS_A1158  DNA-binding transcriptional regulator CsgD  37.5 
 
 		 216 aa  128  6e-29  Escherichia coli HS  Bacteria  normal  0.354651  n/a   
 
 
-
 
NC_009801  EcE24377A_1159  DNA-binding transcriptional regulator CsgD  37.5 
 
 		 216 aa  128  8.000000000000001e-29  Escherichia coli E24377A  Bacteria  normal  1  n/a   
 
 
-
 
NC_011353  ECH74115_1419  DNA-binding transcriptional regulator CsgD  37.5 
 
 		 216 aa  128  8.000000000000001e-29  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  1  normal  0.132272 
 
 
-
 
NC_011083  SeHA_C1253  DNA-binding transcriptional regulator CsgD  36.54 
 
 		 216 aa  127  1.0000000000000001e-28  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  1  normal  0.705931 
 
 
-
 
NC_011080  SNSL254_A1238  DNA-binding transcriptional regulator CsgD  36.54 
 
 		 216 aa  127  1.0000000000000001e-28  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.147361  normal  1 
 
 
-
 
CP001509  ECD_01037  DNA-binding transcriptional activator in two-component regulatory system  37.02 
 
 		 216 aa  126  2.0000000000000002e-28  Escherichia coli BL21(DE3)  Bacteria  normal  1  n/a   
 
 
-
 
NC_012892  B21_01044  hypothetical protein  37.02 
 
 		 216 aa  126  2.0000000000000002e-28  Escherichia coli BL21  Bacteria  normal  1  n/a   
 
 
-
 
NC_011205  SeD_A2231  DNA-binding transcriptional regulator CsgD  36.06 
 
 		 216 aa  125  4.0000000000000003e-28  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.750523  normal  0.99411 
 
 
-
 
NC_011094  SeSA_A1208  DNA-binding transcriptional regulator CsgD  36.06 
 
 		 216 aa  125  4.0000000000000003e-28  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.316434  normal  0.419874 
 
 
-
 
NC_011149  SeAg_B2048  DNA-binding transcriptional regulator CsgD  36.06 
 
 		 216 aa  125  4.0000000000000003e-28  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0804096  n/a   
 
 
-
 
NC_009784  VIBHAR_05153  hypothetical protein  37.27 
 
 		 218 aa  125  4.0000000000000003e-28  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009436  Ent638_1556  DNA-binding transcriptional regulator CsgD  35.58 
 
 		 216 aa  122  4e-27  Enterobacter sp. 638  Bacteria  normal  0.417219  normal  0.369793 
 
 
-
 
NC_009784  VIBHAR_06533  hypothetical protein  35.48 
 
 		 217 aa  120  9.999999999999999e-27  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010498  EcSMS35_2093  DNA-binding transcriptional regulator CsgD  38.51 
 
 		 190 aa  120  1.9999999999999998e-26  Escherichia coli SMS-3-5  Bacteria  normal  1  normal  0.661259 
 
 
-
 
NC_013457  VEA_001276  transcriptional regulator VpsT  35.55 
 
 		 210 aa  119  3e-26  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_007963  Csal_3306  LuxR family transcriptional regulator  34.42 
 
 		 238 aa  118  9e-26  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_009457  VC0395_A2814  LuxR family transcriptional regulator  41.67 
 
 		 214 aa  111  7.000000000000001e-24  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_013889  TK90_1248  transcriptional regulator, LuxR family  35.21 
 
 		 232 aa  107  1e-22  Thioalkalivibrio sp. K90mix  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013456  VEA_002362  DNA-binding HTH domain-containing protein  38.24 
 
 		 214 aa  107  2e-22  Vibrio sp. Ex25  Bacteria  normal  0.0501055  n/a   
 
 
-
 
NC_009783  VIBHAR_03706  hypothetical protein  38.97 
 
 		 214 aa  106  3e-22  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007912  Sde_0994  response regulator receiver domain-containing protein  31.53 
 
 		 221 aa  104  1e-21  Saccharophagus degradans 2-40  Bacteria  normal  0.16925  normal  1 
 
 
-
 
NC_013173  Dbac_2905  transcriptional regulator, LuxR family  32.53 
 
 		 335 aa  100  1e-20  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  1  n/a   
 
 
-
 
NC_009783  VIBHAR_03493  hypothetical protein  28.64 
 
 		 213 aa  86.7  2e-16  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009483  Gura_2620  response regulator receiver protein  31.05 
 
 		 239 aa  85.9  4e-16  Geobacter uraniireducens Rf4  Bacteria  normal  0.649971  n/a   
 
 
-
 
NC_010506  Swoo_0644  LuxR family transcriptional regulator  35.09 
 
 		 221 aa  84  0.000000000000002  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0140532  unclonable  0.00000001613 
 
 
-
 
NC_009654  Mmwyl1_3333  response regulator receiver protein  29.78 
 
 		 196 aa  82.8  0.000000000000004  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  0.458286 
 
 
-
 
NC_011138  MADE_01507  putative transcriptional regulator, LuxR family protein  38.26 
 
 		 159 aa  82  0.000000000000006  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.993499  n/a   
 
 
-
 
NC_009438  Sputcn32_2332  response regulator receiver protein  26.44 
 
 		 211 aa  81.6  0.000000000000009  Shewanella putrefaciens CN-32  Bacteria  normal  1  n/a   
 
 
-
 
NC_009997  Sbal195_1832  LuxR family transcriptional regulator  27.37 
 
 		 211 aa  80.9  0.00000000000001  Shewanella baltica OS195  Bacteria  normal  1  normal  0.426085 
 
 
-
 
NC_011663  Sbal223_2490  transcriptional regulator, LuxR family  27.37 
 
 		 211 aa  80.9  0.00000000000001  Shewanella baltica OS223  Bacteria  normal  0.230305  normal  1 
 
 
-
 
NC_009052  Sbal_1796  response regulator receiver protein  27.37 
 
 		 211 aa  80.9  0.00000000000001  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_009665  Shew185_1788  response regulator receiver protein  27.37 
 
 		 211 aa  80.9  0.00000000000001  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
-
 
NC_004347  SO_2725  LuxR family transcriptional regulator  25.96 
 
 		 211 aa  80.5  0.00000000000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007954  Sden_2327  regulatory protein, LuxR  28.43 
 
 		 210 aa  80.1  0.00000000000002  Shewanella denitrificans OS217  Bacteria  normal  1  n/a   
 
 
-
 
NC_008321  Shewmr4_2316  LuxR family transcriptional regulator  28.31 
 
 		 211 aa  80.1  0.00000000000002  Shewanella sp. MR-4  Bacteria  normal  0.0642505  normal  1 
 
 
-
 
NC_008322  Shewmr7_2386  LuxR family transcriptional regulator  28.31 
 
 		 211 aa  80.1  0.00000000000002  Shewanella sp. MR-7  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008577  Shewana3_2509  LuxR family transcriptional regulator  25.48 
 
 		 211 aa  80.5  0.00000000000002  Shewanella sp. ANA-3  Bacteria  normal  0.592216  hitchhiker  0.00000482381 
 
 
-
 
NC_008322  Shewmr7_3302  LuxR family transcriptional regulator  33.33 
 
 		 221 aa  79.7  0.00000000000003  Shewanella sp. MR-7  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013739  Cwoe_2472  two component transcriptional regulator, LuxR family  31.86 
 
 		 221 aa  79  0.00000000000006  Conexibacter woesei DSM 14684  Bacteria  normal  0.0113125  hitchhiker  0.00367669 
 
 
-
 
NC_009831  Ssed_3945  LuxR family transcriptional regulator  34.21 
 
 		 221 aa  78.2  0.00000000000008  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00801334  normal  0.811932 
 
 
-
 
NC_009831  Ssed_2759  response regulator receiver protein  26.96 
 
 		 211 aa  76.6  0.0000000000003  Shewanella sediminis HAW-EB3  Bacteria  normal  0.550861  normal  0.145492 
 
 
-
 
NC_007954  Sden_3096  regulatory protein, LuxR  33.04 
 
 		 222 aa  76.3  0.0000000000004  Shewanella denitrificans OS217  Bacteria  normal  0.735562  n/a   
 
 
-
 
NC_013510  Tcur_1300  two component transcriptional regulator, LuxR family  33.33 
 
 		 215 aa  76.3  0.0000000000004  Thermomonospora curvata DSM 43183  Bacteria  normal  0.145336  n/a   
 
 
-
 
NC_008576  Mmc1_3704  LuxR family transcriptional regulator  26.32 
 
 		 220 aa  76.3  0.0000000000004  Magnetococcus sp. MC-1  Bacteria  normal  0.0339608  normal  1 
 
 
-
 
NC_013947  Snas_3040  two component transcriptional regulator, LuxR family  45.45 
 
 		 224 aa  75.1  0.0000000000007  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0154763  normal  1 
 
 
-
 
NC_008345  Sfri_1517  transcriptional regulator, LuxR family protein  31.11 
 
 		 210 aa  75.1  0.0000000000007  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.776537  n/a   
 
 
-
 
NC_008345  Sfri_0560  transcriptional regulator, LuxR family protein  33.04 
 
 		 222 aa  74.7  0.000000000001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_009901  Spea_1817  LuxR family transcriptional regulator  25.48 
 
 		 211 aa  74.7  0.000000000001  Shewanella pealeana ATCC 700345  Bacteria  normal  0.596206  n/a   
 
 
-
 
NC_011663  Sbal223_0863  transcriptional regulator, LuxR family  33.33 
 
 		 221 aa  74.7  0.000000000001  Shewanella baltica OS223  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011729  PCC7424_0807  two component transcriptional regulator, LuxR family  33.33 
 
 		 228 aa  74.3  0.000000000001  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.218712 
 
 
-
 
NC_009438  Sputcn32_3137  response regulator receiver protein  33.33 
 
 		 209 aa  74.3  0.000000000001  Shewanella putrefaciens CN-32  Bacteria  normal  1  n/a   
 
 
-
 
NC_004347  SO_0864  LuxR family transcriptional regulator  33.33 
 
 		 255 aa  73.6  0.000000000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013595  Sros_4115  response regulator receiver protein  35.87 
 
 		 216 aa  73.6  0.000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.071707  normal  0.0608108 
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  37.61 
 
 		 211 aa  73.6  0.000000000002  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_1910  response regulator receiver protein  34.13 
 
 		 226 aa  73.9  0.000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.238062  normal  0.36963 
 
 
-
 
NC_009052  Sbal_3500  response regulator receiver protein  32.48 
 
 		 249 aa  73.6  0.000000000002  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  28.03 
 
 		 235 aa  73.6  0.000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_010506  Swoo_3887  LuxR family transcriptional regulator  31.58 
 
 		 221 aa  73.9  0.000000000002  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.00000207134 
 
 
-
 
NC_009665  Shew185_0840  response regulator receiver protein  32.48 
 
 		 221 aa  73.6  0.000000000002  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
-
 
NC_009901  Spea_0633  LuxR family transcriptional regulator  33.91 
 
 		 224 aa  73.9  0.000000000002  Shewanella pealeana ATCC 700345  Bacteria  normal  1  n/a   
 
 
-
 
NC_013093  Amir_4433  two component transcriptional regulator, LuxR family  33.7 
 
 		 215 aa  73.9  0.000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_007498  Pcar_0978  two component signal transduction response regulator  55.93 
 
 		 223 aa  73.2  0.000000000003  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0402933  n/a   
 
 
-
 
NC_009997  Sbal195_0875  LuxR family transcriptional regulator  31.62 
 
 		 221 aa  72.8  0.000000000004  Shewanella baltica OS195  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013947  Snas_5262  two component transcriptional regulator, LuxR family  33.85 
 
 		 219 aa  72.4  0.000000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008321  Shewmr4_0720  LuxR family transcriptional regulator  32.48 
 
 		 221 aa  72.4  0.000000000005  Shewanella sp. MR-4  Bacteria  normal  0.0333677  normal  1 
 
 
-
 
NC_008577  Shewana3_3414  LuxR family transcriptional regulator  32.48 
 
 		 221 aa  71.6  0.000000000008  Shewanella sp. ANA-3  Bacteria  normal  0.295313  normal  1 
 
 
-
 
NC_009092  Shew_1726  LuxR family transcriptional regulator  27.54 
 
 		 208 aa  71.6  0.000000000009  Shewanella loihica PV-4  Bacteria  normal  0.474249  normal  1 
 
 
-
 
NC_013521  Sked_21600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  34.83 
 
 		 222 aa  71.2  0.00000000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.49613  normal  1 
 
 
-
 
NC_010678  Rpic_4675  two component transcriptional regulator, LuxR family  31.86 
 
 		 218 aa  71.2  0.00000000001  Ralstonia pickettii 12J  Bacteria  normal  0.760252  normal  1 
 
 
-
 
NC_008346  Swol_0186  response regulator receiver protein  37.89 
 
 		 213 aa  71.2  0.00000000001  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  decreased coverage  0.00000327076  n/a   
 
 
-
 
NC_012857  Rpic12D_3598  two component transcriptional regulator, LuxR family  31.86 
 
 		 218 aa  71.2  0.00000000001  Ralstonia pickettii 12D  Bacteria  normal  0.329097  normal  0.731815 
 
 
-
 
NC_013526  Tter_2548  two component transcriptional regulator, LuxR family  33.61 
 
 		 218 aa  71.2  0.00000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  1  n/a   
 
 
-
 
NC_011894  Mnod_6717  transcriptional regulator, LuxR family  34.58 
 
 		 509 aa  70.1  0.00000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.440846  n/a   
 
 
-
 
NC_012669  Bcav_2449  two component transcriptional regulator, LuxR family  33.61 
 
 		 220 aa  70.9  0.00000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.729355  normal  1 
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  29.36 
 
 		 213 aa  70.9  0.00000000002  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_010506  Swoo_1880  LuxR family transcriptional regulator  26.6 
 
 		 210 aa  70.9  0.00000000002  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  0.0137892 
 
 
-
 
NC_013159  Svir_00210  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  34 
 
 		 221 aa  70.5  0.00000000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  0.133182 
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  42.22 
 
 		 213 aa  69.7  0.00000000003  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_007511  Bcep18194_B1210  ATP-dependent transcription regulator LuxR  53.57 
 
 		 889 aa  70.1  0.00000000003  Burkholderia sp. 383  Bacteria  normal  0.603589  normal  1 
 
 
-
 
NC_014210  Ndas_0782  two component transcriptional regulator, LuxR family  32.26 
 
 		 220 aa  70.1  0.00000000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013739  Cwoe_2525  two component transcriptional regulator, LuxR family  29.91 
 
 		 215 aa  70.1  0.00000000003  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014210  Ndas_4254  two component transcriptional regulator, LuxR family  29.46 
 
 		 225 aa  69.7  0.00000000004  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.867992  normal  0.287586 
 
 
-
 
NC_013441  Gbro_3238  regulatory protein LuxR  35.11 
 
 		 228 aa  69.7  0.00000000004  Gordonia bronchialis DSM 43247  Bacteria  normal  1  n/a   
 
 
-
 
NC_013530  Xcel_2717  two component transcriptional regulator, LuxR family  30.77 
 
 		 223 aa  69.3  0.00000000004  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
-
 
NC_013093  Amir_4260  two component transcriptional regulator, LuxR family  33.02 
 
 		 217 aa  68.9  0.00000000006  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  53.45 
 
 		 208 aa  68.9  0.00000000006  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_008009  Acid345_0268  two component LuxR family transcriptional regulator  33.04 
 
 		 217 aa  68.6  0.00000000007  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.289536  normal  1 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  30.28 
 
 		 218 aa  68.6  0.00000000007  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_011757  Mchl_0393  transcriptional regulator, LuxR family  29.71 
 
 		 486 aa  68.6  0.00000000007  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  34.78 
 
 		 239 aa  68.6  0.00000000008  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_010172  Mext_0363  PAS sensor protein  29.71 
 
 		 278 aa  68.2  0.00000000008  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013530  Xcel_2601  two component transcriptional regulator, LuxR family  32.28 
 
 		 234 aa  68.6  0.00000000008  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.1212  n/a   
 
 
-
 
NC_013131  Caci_0956  two component transcriptional regulator, LuxR family  35.35 
 
 		 221 aa  68.2  0.00000000009  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011886  Achl_1794  transcriptional regulator, LuxR family  43.94 
 
 		 537 aa  68.2  0.00000000009  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000000182459 
 
 
-
 
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