Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_3096 |
Symbol | |
ID | 4019622 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | - |
Start bp | 3719358 |
End bp | 3720026 |
Gene Length | 669 bp |
Protein Length | 222 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 637957147 |
Product | regulatory protein, LuxR |
Protein accession | YP_564096 |
Protein GI | 91794445 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.735562 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTTCAA ATATCGACGA ATTAGTATTT TTACATCAGG TGGCAGCGCC TTGCCACTTG GCTATTTTAG CCGAATCAAT CGGAATGAAA ACCCGTATCG TAAGACAAGC CTCAGAGTTA GAACAAGAGA AAAAAATTAA TAGTTTCTAT ATGATAGCCC AAAAAGGCGC GGCCTTAGAT AACAAGGGTA TCCCTCTATT GGTGTCTCGT TTGGTTAACC ATGTCCCGGT GGCCTTATAC CAAGTTGAAC GCGGCTCTCT GGATCAAGAA TCGGCGTTAT TGTTGGGGGT GCGTGGGCTG TTATATGCTG ATCAGCGAAT GGATTTAATG CTTACGGGTC TTAGGAAGAT GGTGGCTAAT GAACTTTGGT ATGATAGACC TTTGATTAGT CGGATTTTCC GCCGGTTAGT ACAAAAGCTG GATGCGAATA ATGATATGCC TGCAGATACT ATCGCCATGC TGCAGATGCT CACCAATCGT GAGAGAACCA TAATTCAATT AGTGTCCAGT GGTGCAAGAA ATAAAGAAAT TGCCCATCGA TTATGTATCA GTGAGCATAC CGTTAAGGCG CACTTGTCTT CAGTTTTCCG TAAAACTCAA TCCCGCAATC GAGTCGAGTT ACTGCGTTGG GCGCAAACTT ACCAAGCGCA TTTCGAATTT CAATCTTGA
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Protein sequence | MSSNIDELVF LHQVAAPCHL AILAESIGMK TRIVRQASEL EQEKKINSFY MIAQKGAALD NKGIPLLVSR LVNHVPVALY QVERGSLDQE SALLLGVRGL LYADQRMDLM LTGLRKMVAN ELWYDRPLIS RIFRRLVQKL DANNDMPADT IAMLQMLTNR ERTIIQLVSS GARNKEIAHR LCISEHTVKA HLSSVFRKTQ SRNRVELLRW AQTYQAHFEF QS
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