Gene Sden_3096 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_3096 
Symbol 
ID4019622 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp3719358 
End bp3720026 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content43% 
IMG OID637957147 
Productregulatory protein, LuxR 
Protein accessionYP_564096 
Protein GI91794445 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.735562 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTTCAA ATATCGACGA ATTAGTATTT TTACATCAGG TGGCAGCGCC TTGCCACTTG 
GCTATTTTAG CCGAATCAAT CGGAATGAAA ACCCGTATCG TAAGACAAGC CTCAGAGTTA
GAACAAGAGA AAAAAATTAA TAGTTTCTAT ATGATAGCCC AAAAAGGCGC GGCCTTAGAT
AACAAGGGTA TCCCTCTATT GGTGTCTCGT TTGGTTAACC ATGTCCCGGT GGCCTTATAC
CAAGTTGAAC GCGGCTCTCT GGATCAAGAA TCGGCGTTAT TGTTGGGGGT GCGTGGGCTG
TTATATGCTG ATCAGCGAAT GGATTTAATG CTTACGGGTC TTAGGAAGAT GGTGGCTAAT
GAACTTTGGT ATGATAGACC TTTGATTAGT CGGATTTTCC GCCGGTTAGT ACAAAAGCTG
GATGCGAATA ATGATATGCC TGCAGATACT ATCGCCATGC TGCAGATGCT CACCAATCGT
GAGAGAACCA TAATTCAATT AGTGTCCAGT GGTGCAAGAA ATAAAGAAAT TGCCCATCGA
TTATGTATCA GTGAGCATAC CGTTAAGGCG CACTTGTCTT CAGTTTTCCG TAAAACTCAA
TCCCGCAATC GAGTCGAGTT ACTGCGTTGG GCGCAAACTT ACCAAGCGCA TTTCGAATTT
CAATCTTGA
 
Protein sequence
MSSNIDELVF LHQVAAPCHL AILAESIGMK TRIVRQASEL EQEKKINSFY MIAQKGAALD 
NKGIPLLVSR LVNHVPVALY QVERGSLDQE SALLLGVRGL LYADQRMDLM LTGLRKMVAN
ELWYDRPLIS RIFRRLVQKL DANNDMPADT IAMLQMLTNR ERTIIQLVSS GARNKEIAHR
LCISEHTVKA HLSSVFRKTQ SRNRVELLRW AQTYQAHFEF QS