More than 300 homologs were found in PanDaTox collection
for query gene VEA_001276 on replicon NC_013457
Organism: Vibrio sp. Ex25



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013457  VEA_001276  transcriptional regulator VpsT  100 
 
 		 210 aa  432  1e-120  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_009784  VIBHAR_05153  hypothetical protein  84.69 
 
 		 218 aa  381  1e-105  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009784  VIBHAR_06533  hypothetical protein  42.11 
 
 		 217 aa  164  8e-40  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_002362  DNA-binding HTH domain-containing protein  42.35 
 
 		 214 aa  135  4e-31  Vibrio sp. Ex25  Bacteria  normal  0.0501055  n/a   
 
 
-
 
NC_013889  TK90_1248  transcriptional regulator, LuxR family  37.14 
 
 		 232 aa  135  5e-31  Thioalkalivibrio sp. K90mix  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007963  Csal_3306  LuxR family transcriptional regulator  34.58 
 
 		 238 aa  135  6.0000000000000005e-31  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_009783  VIBHAR_03706  hypothetical protein  41.29 
 
 		 214 aa  133  1.9999999999999998e-30  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009457  VC0395_A2814  LuxR family transcriptional regulator  44.44 
 
 		 214 aa  127  1.0000000000000001e-28  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_009784  VIBHAR_05152  protein-glutamate methylesterase  33.95 
 
 		 222 aa  124  1e-27  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009456  VC0395_0287  LuxR family transcriptional regulator  32.57 
 
 		 224 aa  122  5e-27  Vibrio cholerae O395  Bacteria  normal  0.1053  n/a   
 
 
-
 
NC_011083  SeHA_C1253  DNA-binding transcriptional regulator CsgD  35.41 
 
 		 216 aa  120  1.9999999999999998e-26  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  1  normal  0.705931 
 
 
-
 
NC_011080  SNSL254_A1238  DNA-binding transcriptional regulator CsgD  35.41 
 
 		 216 aa  120  1.9999999999999998e-26  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.147361  normal  1 
 
 
-
 
NC_011149  SeAg_B2048  DNA-binding transcriptional regulator CsgD  35.41 
 
 		 216 aa  119  1.9999999999999998e-26  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0804096  n/a   
 
 
-
 
NC_011094  SeSA_A1208  DNA-binding transcriptional regulator CsgD  35.41 
 
 		 216 aa  119  1.9999999999999998e-26  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.316434  normal  0.419874 
 
 
-
 
NC_011205  SeD_A2231  DNA-binding transcriptional regulator CsgD  35.41 
 
 		 216 aa  119  1.9999999999999998e-26  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.750523  normal  0.99411 
 
 
-
 
NC_013457  VEA_001275  transcriptional regulator VpsT  35.55 
 
 		 222 aa  119  3e-26  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_011312  VSAL_I2858  probable CsgAB operon transcriptional regulatory protein  42.75 
 
 		 215 aa  117  9e-26  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.256874  n/a   
 
 
-
 
NC_009436  Ent638_1556  DNA-binding transcriptional regulator CsgD  33.64 
 
 		 216 aa  116  3e-25  Enterobacter sp. 638  Bacteria  normal  0.417219  normal  0.369793 
 
 
-
 
CP001637  EcDH1_2605  transcriptional regulator, LuxR family  33.01 
 
 		 216 aa  115  6.9999999999999995e-25  Escherichia coli DH1  Bacteria  normal  0.196673  n/a   
 
 
-
 
CP001509  ECD_01037  DNA-binding transcriptional activator in two-component regulatory system  38.78 
 
 		 216 aa  114  1.0000000000000001e-24  Escherichia coli BL21(DE3)  Bacteria  normal  1  n/a   
 
 
-
 
NC_010498  EcSMS35_2093  DNA-binding transcriptional regulator CsgD  40.28 
 
 		 190 aa  114  1.0000000000000001e-24  Escherichia coli SMS-3-5  Bacteria  normal  1  normal  0.661259 
 
 
-
 
NC_009800  EcHS_A1158  DNA-binding transcriptional regulator CsgD  40.28 
 
 		 216 aa  114  1.0000000000000001e-24  Escherichia coli HS  Bacteria  normal  0.354651  n/a   
 
 
-
 
NC_010468  EcolC_2559  DNA-binding transcriptional regulator CsgD  40.28 
 
 		 216 aa  114  1.0000000000000001e-24  Escherichia coli ATCC 8739  Bacteria  normal  0.980478  normal  0.382247 
 
 
-
 
NC_012892  B21_01044  hypothetical protein  38.78 
 
 		 216 aa  114  1.0000000000000001e-24  Escherichia coli BL21  Bacteria  normal  1  n/a   
 
 
-
 
NC_011353  ECH74115_1419  DNA-binding transcriptional regulator CsgD  40.28 
 
 		 216 aa  114  1.0000000000000001e-24  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  1  normal  0.132272 
 
 
-
 
NC_009801  EcE24377A_1159  DNA-binding transcriptional regulator CsgD  40.28 
 
 		 216 aa  114  1.0000000000000001e-24  Escherichia coli E24377A  Bacteria  normal  1  n/a   
 
 
-
 
NC_007912  Sde_0994  response regulator receiver domain-containing protein  39.23 
 
 		 221 aa  112  4.0000000000000004e-24  Saccharophagus degradans 2-40  Bacteria  normal  0.16925  normal  1 
 
 
-
 
NC_009654  Mmwyl1_3333  response regulator receiver protein  34.92 
 
 		 196 aa  99  5e-20  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  0.458286 
 
 
-
 
NC_009901  Spea_1817  LuxR family transcriptional regulator  33.79 
 
 		 211 aa  83.6  0.000000000000002  Shewanella pealeana ATCC 700345  Bacteria  normal  0.596206  n/a   
 
 
-
 
NC_009783  VIBHAR_03493  hypothetical protein  38.84 
 
 		 213 aa  82  0.000000000000006  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013173  Dbac_2905  transcriptional regulator, LuxR family  32.33 
 
 		 335 aa  80.5  0.00000000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  1  n/a   
 
 
-
 
NC_008345  Sfri_1517  transcriptional regulator, LuxR family protein  33.33 
 
 		 210 aa  79.7  0.00000000000003  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.776537  n/a   
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  36.84 
 
 		 208 aa  79.3  0.00000000000003  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_002936  DET0663  LuxR family DNA-binding response regulator  42.42 
 
 		 224 aa  78.6  0.00000000000007  Dehalococcoides ethenogenes 195  Bacteria  normal  1  n/a   
 
 
-
 
NC_002936  DET0697  LuxR family DNA-binding response regulator  42.42 
 
 		 224 aa  78.6  0.00000000000007  Dehalococcoides ethenogenes 195  Bacteria  normal  1  n/a   
 
 
-
 
NC_009455  DehaBAV1_0632  two component LuxR family transcriptional regulator  39.81 
 
 		 224 aa  77  0.0000000000002  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00385785  n/a   
 
 
-
 
NC_008322  Shewmr7_3302  LuxR family transcriptional regulator  34.68 
 
 		 221 aa  77.4  0.0000000000002  Shewanella sp. MR-7  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008700  Sama_2948  response regulator receiver protein  33.33 
 
 		 221 aa  77  0.0000000000002  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.126231 
 
 
-
 
NC_011138  MADE_01507  putative transcriptional regulator, LuxR family protein  30.65 
 
 		 159 aa  76.3  0.0000000000003  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.993499  n/a   
 
 
-
 
NC_007954  Sden_2327  regulatory protein, LuxR  33.33 
 
 		 210 aa  75.9  0.0000000000004  Shewanella denitrificans OS217  Bacteria  normal  1  n/a   
 
 
-
 
NC_010506  Swoo_1880  LuxR family transcriptional regulator  32.59 
 
 		 210 aa  75.5  0.0000000000006  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  0.0137892 
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  27.49 
 
 		 213 aa  75.1  0.0000000000007  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_004347  SO_2725  LuxR family transcriptional regulator  34.92 
 
 		 211 aa  75.1  0.0000000000008  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013552  DhcVS_601  DNA-binding response regulator, LuxR family  41.41 
 
 		 224 aa  75.1  0.0000000000008  Dehalococcoides sp. VS  Bacteria  normal  1  n/a   
 
 
-
 
NC_008576  Mmc1_3704  LuxR family transcriptional regulator  30.28 
 
 		 220 aa  74.7  0.0000000000009  Magnetococcus sp. MC-1  Bacteria  normal  0.0339608  normal  1 
 
 
-
 
NC_009901  Spea_0633  LuxR family transcriptional regulator  34.13 
 
 		 224 aa  74.3  0.000000000001  Shewanella pealeana ATCC 700345  Bacteria  normal  1  n/a   
 
 
-
 
NC_008699  Noca_2635  response regulator receiver  26.46 
 
 		 207 aa  73.6  0.000000000002  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_008146  Mmcs_1619  two component LuxR family transcriptional regulator  35.14 
 
 		 163 aa  73.2  0.000000000003  Mycobacterium sp. MCS  Bacteria  normal  0.113726  n/a   
 
 
-
 
NC_008705  Mkms_1644  two component LuxR family transcriptional regulator  35.14 
 
 		 163 aa  73.2  0.000000000003  Mycobacterium sp. KMS  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009077  Mjls_1592  two component LuxR family transcriptional regulator  35.14 
 
 		 162 aa  73.2  0.000000000003  Mycobacterium sp. JLS  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010506  Swoo_0644  LuxR family transcriptional regulator  32.76 
 
 		 221 aa  72.4  0.000000000004  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0140532  unclonable  0.00000001613 
 
 
-
 
NC_010506  Swoo_3887  LuxR family transcriptional regulator  33.62 
 
 		 221 aa  72.8  0.000000000004  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.00000207134 
 
 
-
 
NC_009438  Sputcn32_2332  response regulator receiver protein  32.03 
 
 		 211 aa  72.8  0.000000000004  Shewanella putrefaciens CN-32  Bacteria  normal  1  n/a   
 
 
-
 
NC_008700  Sama_1446  response regulator receiver protein  33.33 
 
 		 210 aa  72.4  0.000000000005  Shewanella amazonensis SB2B  Bacteria  normal  0.0398792  normal  1 
 
 
-
 
NC_014248  Aazo_0236  LuxR family two component transcriptional regulator  37.25 
 
 		 218 aa  72  0.000000000006  'Nostoc azollae' 0708  Bacteria  normal  1  n/a   
 
 
-
 
NC_008527  LACR_0967  DNA-binding response regulator  60.71 
 
 		 209 aa  72  0.000000000006  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.598364  n/a   
 
 
-
 
NC_008577  Shewana3_2509  LuxR family transcriptional regulator  32.03 
 
 		 211 aa  72  0.000000000006  Shewanella sp. ANA-3  Bacteria  normal  0.592216  hitchhiker  0.00000482381 
 
 
-
 
NC_009092  Shew_1726  LuxR family transcriptional regulator  31.85 
 
 		 208 aa  72  0.000000000006  Shewanella loihica PV-4  Bacteria  normal  0.474249  normal  1 
 
 
-
 
NC_011663  Sbal223_2490  transcriptional regulator, LuxR family  32.03 
 
 		 211 aa  71.6  0.000000000007  Shewanella baltica OS223  Bacteria  normal  0.230305  normal  1 
 
 
-
 
NC_008321  Shewmr4_2316  LuxR family transcriptional regulator  32.03 
 
 		 211 aa  72  0.000000000007  Shewanella sp. MR-4  Bacteria  normal  0.0642505  normal  1 
 
 
-
 
NC_008322  Shewmr7_2386  LuxR family transcriptional regulator  32.03 
 
 		 211 aa  72  0.000000000007  Shewanella sp. MR-7  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009665  Shew185_1788  response regulator receiver protein  32.03 
 
 		 211 aa  71.6  0.000000000007  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
-
 
NC_009997  Sbal195_1832  LuxR family transcriptional regulator  32.03 
 
 		 211 aa  71.6  0.000000000007  Shewanella baltica OS195  Bacteria  normal  1  normal  0.426085 
 
 
-
 
NC_009052  Sbal_1796  response regulator receiver protein  32.03 
 
 		 211 aa  71.6  0.000000000007  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_009831  Ssed_3945  LuxR family transcriptional regulator  31.03 
 
 		 221 aa  71.6  0.000000000007  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00801334  normal  0.811932 
 
 
-
 
NC_014210  Ndas_4080  two component transcriptional regulator, LuxR family  34.91 
 
 		 241 aa  71.6  0.000000000008  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  0.858367 
 
 
-
 
NC_009483  Gura_2620  response regulator receiver protein  34.06 
 
 		 239 aa  71.6  0.000000000008  Geobacter uraniireducens Rf4  Bacteria  normal  0.649971  n/a   
 
 
-
 
NC_013595  Sros_1936  response regulator receiver protein  36.89 
 
 		 205 aa  70.9  0.00000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008345  Sfri_0560  transcriptional regulator, LuxR family protein  33.62 
 
 		 222 aa  70.9  0.00000000001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  33.98 
 
 		 242 aa  70.1  0.00000000002  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_011831  Cagg_0340  two component transcriptional regulator, LuxR family  35.24 
 
 		 217 aa  70.1  0.00000000002  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00614189  hitchhiker  0.00317709 
 
 
-
 
NC_009831  Ssed_2759  response regulator receiver protein  29.09 
 
 		 211 aa  70.1  0.00000000002  Shewanella sediminis HAW-EB3  Bacteria  normal  0.550861  normal  0.145492 
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  33.33 
 
 		 220 aa  70.5  0.00000000002  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  31.68 
 
 		 216 aa  70.5  0.00000000002  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  28.72 
 
 		 219 aa  70.1  0.00000000002  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.001499 
 
 
-
 
NC_008148  Rxyl_2809  two component LuxR family transcriptional regulator  38.53 
 
 		 219 aa  69.7  0.00000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_008578  Acel_1760  two component LuxR family transcriptional regulator  33.94 
 
 		 303 aa  69.7  0.00000000003  Acidothermus cellulolyticus 11B  Bacteria  normal  1  normal  0.887336 
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  33.33 
 
 		 220 aa  69.7  0.00000000003  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_013530  Xcel_0606  two component transcriptional regulator, LuxR family  36.89 
 
 		 212 aa  69.7  0.00000000003  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  35.58 
 
 		 226 aa  69.7  0.00000000003  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal  1 
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  33.33 
 
 		 220 aa  69.7  0.00000000003  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_009092  Shew_3194  LuxR family transcriptional regulator  31.93 
 
 		 220 aa  70.1  0.00000000003  Shewanella loihica PV-4  Bacteria  normal  0.0232917  normal  0.227391 
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  33.33 
 
 		 220 aa  69.7  0.00000000003  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_007954  Sden_3096  regulatory protein, LuxR  33.33 
 
 		 222 aa  69.3  0.00000000004  Shewanella denitrificans OS217  Bacteria  normal  0.735562  n/a   
 
 
-
 
NC_003909  BCE_1563  DNA-binding response regulator  36.63 
 
 		 210 aa  68.9  0.00000000005  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.0000000942452  n/a   
 
 
-
 
NC_011773  BCAH820_1531  DNA-binding response regulator  36.63 
 
 		 210 aa  68.9  0.00000000005  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  8.64189e-24 
 
 
-
 
NC_005945  BAS1348  DNA-binding response regulator  36.63 
 
 		 210 aa  68.9  0.00000000005  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.0000440829  n/a   
 
 
-
 
NC_005957  BT9727_1322  response regulator  36.63 
 
 		 210 aa  68.9  0.00000000005  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  7.30192e-17  n/a   
 
 
-
 
NC_006274  BCZK1321  response regulator  36.63 
 
 		 210 aa  68.9  0.00000000005  Bacillus cereus E33L  Bacteria  hitchhiker  0.00000332221  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1363  two component LuxR family transcriptional regulator  36.63 
 
 		 210 aa  68.9  0.00000000005  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.0039551  n/a   
 
 
-
 
NC_011772  BCG9842_B3849  DNA-binding response regulator  36.63 
 
 		 210 aa  68.9  0.00000000005  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000308683  hitchhiker  0.000000000350245 
 
 
-
 
NC_007530  GBAA_1457  DNA-binding response regulator  36.63 
 
 		 210 aa  68.9  0.00000000005  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.0000538049  n/a   
 
 
-
 
NC_013530  Xcel_1619  two component transcriptional regulator, LuxR family  36.84 
 
 		 234 aa  68.9  0.00000000005  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
-
 
NC_012791  Vapar_4026  two component transcriptional regulator, LuxR family  50.75 
 
 		 200 aa  68.9  0.00000000005  Variovorax paradoxus S110  Bacteria  normal  0.105506  n/a   
 
 
-
 
NC_013595  Sros_4468  response regulator receiver protein  35.58 
 
 		 219 aa  68.9  0.00000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0876299  normal  0.32237 
 
 
-
 
NC_011898  Ccel_1863  two component transcriptional regulator, LuxR family  56.36 
 
 		 216 aa  68.9  0.00000000005  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000548978  n/a   
 
 
-
 
NC_011658  BCAH187_A1601  DNA-binding response regulator  36.63 
 
 		 210 aa  68.9  0.00000000005  Bacillus cereus AH187  Bacteria  unclonable  0.00000000136266  n/a   
 
 
-
 
NC_008321  Shewmr4_0720  LuxR family transcriptional regulator  32.26 
 
 		 221 aa  68.9  0.00000000006  Shewanella sp. MR-4  Bacteria  normal  0.0333677  normal  1 
 
 
-
 
NC_008577  Shewana3_3414  LuxR family transcriptional regulator  31.45 
 
 		 221 aa  68.6  0.00000000006  Shewanella sp. ANA-3  Bacteria  normal  0.295313  normal  1 
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  29.8 
 
 		 220 aa  68.9  0.00000000006  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>