| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1726 |
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| Symbol | |
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| ID | 4923262 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1979869 |
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| End bp | 1980495 |
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| Gene Length | 627 bp |
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| Protein Length | 208 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640163288 |
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| Product | LuxR family transcriptional regulator |
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| Protein accession | YP_001093852 |
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| Protein GI | 127512655 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.474249 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTCAAAG TGATAAATTG GGTAGTGGTA TCGCGATCGC AACTGTTGAT TGATCTGTTG
GAGACGCGTT GGCCCCAGGA GTTTCTGGTT AAACTGGCTA AGGTCACCCC AGAGAGTGTT
GAAGTGACTA TGAGTGAAGG GAATTACTCT TTGGTTGTTA TCGATCTCGC CACCATAGAT
GTGCAGCGTG CCTACCAGGT ACAAAAGCAG ATCGAGAAGC GCCACAGCGC CCGCGTGGTA
TTCTTGCACT ATCCGAAACA GATAGATGCA AGATTCTTAA TTTCCCCCAT TACCGCCGCC
GTCTTTTATG GCGATGCTTC CCTTGAGCAT ATAGGCAAGG TCTTAGCCAA TGTGCTACGC
GGCCAGACGG TGATCCCACA TGCTTTGTTG TCGGCTTCTG CGGATCAGGA GCAACTCGAC
GGCGCCGACA ACCTGACGAT TCGTGAGCGA GAGGTGCTGC AGGCATTACT CTCGGGTAGC
ACTAACGTGG ATATCGCCAA TCAGTTGTTT GTCAGCGAGA GCACCATCAA GACGCATCTC
TATCGTGTGT TTAGAAAGAT TGGTGTCTCA AGTCGTGGAC AGGCTATTGC CTGGGCACAG
ACTCATCTGC ATGAGGTTCA GCAGTGA
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| Protein sequence | MFKVINWVVV SRSQLLIDLL ETRWPQEFLV KLAKVTPESV EVTMSEGNYS LVVIDLATID
VQRAYQVQKQ IEKRHSARVV FLHYPKQIDA RFLISPITAA VFYGDASLEH IGKVLANVLR
GQTVIPHALL SASADQEQLD GADNLTIRER EVLQALLSGS TNVDIANQLF VSESTIKTHL
YRVFRKIGVS SRGQAIAWAQ THLHEVQQ
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