| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3945 |
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| Symbol | |
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| ID | 5611532 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4822918 |
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| End bp | 4823583 |
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| Gene Length | 666 bp |
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| Protein Length | 221 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934899 |
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| Product | LuxR family transcriptional regulator |
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| Protein accession | YP_001475677 |
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| Protein GI | 157377077 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00801334 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.811932 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTAAAA TTGACGGGTT AGTGTTTTTG CACCAAGTTG CAGCCCCATG CCATCTGGCC
ATCTTGGCTG AATCTATCGG ATTAAAGACC CGTATCGTAA AGCAGGTGTC TGATTTAGAG
CCTGAAAGGG ACGGTGATAG TTTCTACCTA ATTTCACAAG AAGGTGCAGC ACTCGACAGT
AAAGGGATCC CTTTACTGGC CTCTCGTCTG GTGCCTCATG TCCCCGTCGC TCTATATCAA
GTCGATCGCG ATAAGCTGGA GCCTGAAACG GCGCTGTTAT TGGGGATCCG TGGGCTCCTC
TATGCCGATC AGCGTATGGA TCTGCTCTTA ACCGGTCTGA GAAAGATGGT CGCCGACGAG
TTATGGTATG ACAGAACCTT GATCAGCAAG ATGTTTCGTC ATCTTGTGAA GCGATTAGAC
AGTGCCAATG ATTATTCTCA AGAGACGGTG GCTATGCTGG AGATGCTCAC GAAACGGGAG
CGTACCATCA TTCAATTAGT CTCCAGTGGA GCCAGAAATA AAGAGATCGC CCATAACCTT
TGCATCAGTG AGCACACGGT GAAGGCACAC ATCTCATCTA TCTTCAGAAA GACTCAATCA
CGCAACCGTG TAGAATTACT CCGCTGGGCT CAAACCTACC AGAGTCATTT TGAACTTTGT
TCATAG
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| Protein sequence | MSKIDGLVFL HQVAAPCHLA ILAESIGLKT RIVKQVSDLE PERDGDSFYL ISQEGAALDS
KGIPLLASRL VPHVPVALYQ VDRDKLEPET ALLLGIRGLL YADQRMDLLL TGLRKMVADE
LWYDRTLISK MFRHLVKRLD SANDYSQETV AMLEMLTKRE RTIIQLVSSG ARNKEIAHNL
CISEHTVKAH ISSIFRKTQS RNRVELLRWA QTYQSHFELC S
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