Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_1419 |
Symbol | csgD |
ID | 6970987 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011353 |
Strand | - |
Start bp | 1405272 |
End bp | 1405922 |
Gene Length | 651 bp |
Protein Length | 216 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 643385393 |
Product | DNA-binding transcriptional regulator CsgD |
Protein accession | YP_002269887 |
Protein GI | 209396459 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 0.132272 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTAATG AAGTCCATAG TATTCATGGT CATACATTAT TGTTGATCAC TAAACCTTCT TTGCAGGCGA CAGCTCTCTT GCAGCACCTT AAACAATCGC TGGCAATTAC AGGAAAATTA CATAATATTC AACGTTCTCT GGACGATATC TCTTCAGGCT CTATTATTCT TCTGGATATG ATGGAAGCGG ATAAAAAGCT TATCCATTAT TGGCAGGATA CTTTGAGCAG GAAAAACAAC AATATCAAAA TATTGTTGCT AAATACGCCT GAAGATTACC CGTACCGCGA CATTGAAAAC TGGCCTCATA TCAACGGCGT TTTTTATGCC ATGGAGGATC AAGAACGCGT TGTCAATGGA TTGCAAGGCG TCCTGCGCGG CGAATGCTAC TTTACGCAAA AGCTTGCCAG TTACCTGATT ACACATTCTG GTAACTATCG TTATAACAGC ACGGAATCAG CCCTCCTTAC TCATCGGGAA AAAGAGATCC TGAATAAGCT GCGTATCGGC GCGTCTAATA ACGAGATCGC TCGTTCGTTG TTCATCAGCG AAAATACGGT TAAAACGCAT CTTTATAATC TTTTCAAGAA GATAGCCGTA AAAAACCGGA CACAAGCGGT TTCCTGGGCA AACGATAACC TCAGGCGATA A
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Protein sequence | MFNEVHSIHG HTLLLITKPS LQATALLQHL KQSLAITGKL HNIQRSLDDI SSGSIILLDM MEADKKLIHY WQDTLSRKNN NIKILLLNTP EDYPYRDIEN WPHINGVFYA MEDQERVVNG LQGVLRGECY FTQKLASYLI THSGNYRYNS TESALLTHRE KEILNKLRIG ASNNEIARSL FISENTVKTH LYNLFKKIAV KNRTQAVSWA NDNLRR
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