Gene ECH74115_1419 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagECH74115_1419 
SymbolcsgD 
ID6970987 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli O157:H7 str. EC4115 
KingdomBacteria 
Replicon accessionNC_011353 
Strand
Start bp1405272 
End bp1405922 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content42% 
IMG OID643385393 
ProductDNA-binding transcriptional regulator CsgD 
Protein accessionYP_002269887 
Protein GI209396459 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value0.132272 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTAATG AAGTCCATAG TATTCATGGT CATACATTAT TGTTGATCAC TAAACCTTCT 
TTGCAGGCGA CAGCTCTCTT GCAGCACCTT AAACAATCGC TGGCAATTAC AGGAAAATTA
CATAATATTC AACGTTCTCT GGACGATATC TCTTCAGGCT CTATTATTCT TCTGGATATG
ATGGAAGCGG ATAAAAAGCT TATCCATTAT TGGCAGGATA CTTTGAGCAG GAAAAACAAC
AATATCAAAA TATTGTTGCT AAATACGCCT GAAGATTACC CGTACCGCGA CATTGAAAAC
TGGCCTCATA TCAACGGCGT TTTTTATGCC ATGGAGGATC AAGAACGCGT TGTCAATGGA
TTGCAAGGCG TCCTGCGCGG CGAATGCTAC TTTACGCAAA AGCTTGCCAG TTACCTGATT
ACACATTCTG GTAACTATCG TTATAACAGC ACGGAATCAG CCCTCCTTAC TCATCGGGAA
AAAGAGATCC TGAATAAGCT GCGTATCGGC GCGTCTAATA ACGAGATCGC TCGTTCGTTG
TTCATCAGCG AAAATACGGT TAAAACGCAT CTTTATAATC TTTTCAAGAA GATAGCCGTA
AAAAACCGGA CACAAGCGGT TTCCTGGGCA AACGATAACC TCAGGCGATA A
 
Protein sequence
MFNEVHSIHG HTLLLITKPS LQATALLQHL KQSLAITGKL HNIQRSLDDI SSGSIILLDM 
MEADKKLIHY WQDTLSRKNN NIKILLLNTP EDYPYRDIEN WPHINGVFYA MEDQERVVNG
LQGVLRGECY FTQKLASYLI THSGNYRYNS TESALLTHRE KEILNKLRIG ASNNEIARSL
FISENTVKTH LYNLFKKIAV KNRTQAVSWA NDNLRR