| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2858 |
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| Symbol | csgD |
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| ID | 6988353 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 3095102 |
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| End bp | 3095749 |
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| Gene Length | 648 bp |
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| Protein Length | 215 aa |
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| Translation table | 11 |
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| GC content | 29% |
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| IMG OID | 643381133 |
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| Product | probable CsgAB operon transcriptional regulatory protein |
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| Protein accession | YP_002264190 |
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| Protein GI | 209696260 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.256874 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAACATTT ATTATTTATC ATCAAGTCCA ACCTTGTATT CATCTTTACT CATTGATTTA
TTAGAAAAAT CTTCTGGTAG AAAGATAATG ACACTTGATT GTGATGAGTT AGGTATGAAA
GGAGAAAAAG AAGATGAAGA CATTTTAGTT ATTTTGGATT TTAAAAACCA AACAGATAAG
AAATATAAAC AGTATCTCTC TGTTATAACG AAATATAAAT TGAAGGTAAA AGAAATACTC
TTTAACGTAA CTAATGAAAA TATAACAAAA AATATAATGA GATACCCCAG TGTTGTTGGC
GTTTTTTATG AAAAAGATAA TGTCGACGTA ATATCTGAAG GGGTAAAGAA AATAATTGAT
GGTGAGATGT GGCTTAGCCG GAAAATAACA AATGATCTTA TTTCTATTTA TCGTTCAAAA
CAAAATGGAA TATTAACATC ATCGGTTTCT TTAACGACAA GAGAAAAAGA AATATTAAAG
CTTCTTTCTT TAGGGGCATC AAATATAGAT ATCGCAAATA CACTTTTTGT TAGTGAAAAT
ACGGTTAAAA CACATTTGCA TAATGTATTT AAAAAATTGA ATGTAAAGAA TCGCTTGCAA
GCAATGATAT GGACAAAGGG GTATGACTTT GAAGGGATAA GTGAATGA
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| Protein sequence | MNIYYLSSSP TLYSSLLIDL LEKSSGRKIM TLDCDELGMK GEKEDEDILV ILDFKNQTDK
KYKQYLSVIT KYKLKVKEIL FNVTNENITK NIMRYPSVVG VFYEKDNVDV ISEGVKKIID
GEMWLSRKIT NDLISIYRSK QNGILTSSVS LTTREKEILK LLSLGASNID IANTLFVSEN
TVKTHLHNVF KKLNVKNRLQ AMIWTKGYDF EGISE
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