| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2093 |
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| Symbol | csgD |
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| ID | 6144376 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 2104178 |
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| End bp | 2104750 |
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| Gene Length | 573 bp |
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| Protein Length | 190 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641616969 |
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| Product | DNA-binding transcriptional regulator CsgD |
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| Protein accession | YP_001744145 |
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| Protein GI | 170682157 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 0.661259 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGCAGCACC TTAAACAATC GCTGGCAATT ACAGGAAAAT TACATAATAT TCAACGTTCT
CTGGACGATA TCTCTTCAGG CTCTATTATT CTTCTGGATA TGATGGAAGC GGATAAAAAG
CTTATCCATT ATTGGCAGGA TACTTTGAGC AGGAAAAACA ACAATATCAA AATATTGTTG
CTAAATACGC CTGAAGATTA CCCGTACCGC GACATTGAAA ACTGGCCTCA TATCAACGGC
GTTTTTTATG CCATGGAGGA TCAAGAACGT GTTGTCAATG GGTTGCAAGG CGTCCTGCGC
GGCGAATGCT ACTTTACGCA AAAGCTTGCC AGCTACCTGA TTACGCATTC GGGTAACTAT
CGTTATAACA GCACGGAATC AGCCCTCCTT ACTCATCGGG AAAAAGAGAT CCTGAATAAG
CTGCGTATCG GCGCGTCTAA TAACGAGATC GCTCGTTCGT TGTTCATCAG CGAAAATACG
GTTAAAACGC ATCTTTATAA CCTTTTCAAG AAGATAGCTG TAAAAAACCG GACACAAGCG
GTTTCCTGGG CAAACGATAA CCTCAGGCGA TAA
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| Protein sequence | MQHLKQSLAI TGKLHNIQRS LDDISSGSII LLDMMEADKK LIHYWQDTLS RKNNNIKILL
LNTPEDYPYR DIENWPHING VFYAMEDQER VVNGLQGVLR GECYFTQKLA SYLITHSGNY
RYNSTESALL THREKEILNK LRIGASNNEI ARSLFISENT VKTHLYNLFK KIAVKNRTQA
VSWANDNLRR
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