| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0560 |
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| Symbol | |
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| ID | 4278728 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 649717 |
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| End bp | 650385 |
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| Gene Length | 669 bp |
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| Protein Length | 222 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638133318 |
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| Product | transcriptional regulator, LuxR family protein |
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| Protein accession | YP_749259 |
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| Protein GI | 114561746 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTCAA ATATTGATGA GTTGGTGTTT TTGCACCAAA TCGCAGCACC TTGCCATTTA
GCTATTTTGG CAGAATCTAT CGGTTTAAAA ACTCGAATTG TAAAGCACGC TGCTGAGCTT
GAGTTAGAAA AAAAATCCAA CAACTTTTAT CTTGTTTCAC AAAAAGGTGC GGCCTTAGAC
AGTAAGGGCA TTCCGTTGTT GGTATCGCGT TTAGTTGAGC ATGTCCCTGT AGCATTATAC
CAAGTTGAAC GTGGATCACT TGATCAAGAG TCTGCATTGC TCCTGGGGGT GCGGGGTTTA
TTATACAGTG ACCAACGCAT GGATTTAATG CTGACTGGTT TGCGTAAAAT GGTTTCTGAC
GAATTGTGGT ATGACCGTCC ATTGATCAGT AAAATTTTTA GACGTTTAGT CCAGCAGTTA
GATACCAGTG CTGAAATCCC AGCCGATACT GTTGCCATCC TCCAAAGATT GACCAGCCGA
GAGAGAACCA TTATTCAGCT TGTCTCTAGC GGCGCGCGTA ATAAAGAAAT TGCTCAGCGC
CTGTGTATTA GTGAACATAC TGTTAAAGCA CATATCTCAT CAATTTTCCG TAAAACGGAG
TCTCGTAACC GAGTTGAGTT ATTGCGTTGG GCACAAACCT ATCAAAGCCA TTGTGAATTA
GTGAGTTAA
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| Protein sequence | MSSNIDELVF LHQIAAPCHL AILAESIGLK TRIVKHAAEL ELEKKSNNFY LVSQKGAALD
SKGIPLLVSR LVEHVPVALY QVERGSLDQE SALLLGVRGL LYSDQRMDLM LTGLRKMVSD
ELWYDRPLIS KIFRRLVQQL DTSAEIPADT VAILQRLTSR ERTIIQLVSS GARNKEIAQR
LCISEHTVKA HISSIFRKTE SRNRVELLRW AQTYQSHCEL VS
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