| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3194 |
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| Symbol | |
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| ID | 4921584 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3805624 |
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| End bp | 3806286 |
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| Gene Length | 663 bp |
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| Protein Length | 220 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640164804 |
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| Product | LuxR family transcriptional regulator |
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| Protein accession | YP_001095319 |
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| Protein GI | 127514122 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0232917 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.227391 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTAAAA TTGATGAACT GGTTTTTCTA CACCAAGATT CAACACCGTG CCATCTGGCC
GTTCTGGCTG AATCGATAGG CCTAAAGACA CGTATCGCCC GTCAGGTCAG CGACCTGGAT
CCGGAGCGGG ATCGTAACAG TTTCTACCTC ATTGCCCAGA AGGGCGCGGC GCTGGACAGC
AAGGGCGTGC CCTTGATTGT CGCGCGTCTA TTACCCCATG TGCCCATCGC CCTCTATCAG
GTCGAACGCG GTAGCCTGGA GCCGGAATCT GCCCTGCTGC TCGGGGTGCG CGGCCTGCTG
TTTTCCGATC AGCGTATGGA TCTCTCGCTG ACCGGATTGC GTAAGATGGT CAACGATGAG
CTGTGGTATG ACAGACCTTT GATCTCTAAG GTGTTTCGTC AGCTGGTGAG TCGCCAGGAC
AGTGGCGTAG AGCTGACCCA GGATATGGTC GCCATGCTGC AAAAGCTCAC CACTCGTGAG
CGCACCATCA TACAGTTGGT CTCCAGCGGT GCCCGCAACA AGGAGATCGC CGATCGCCTA
TGTATCAGCG AGCACACGGT CAAGGCCCAT ATTTCCTCTA TCTTCCGCAA GACTCAGTCT
CGTAATCGGG TCGAGCTGCT GCGCTGGTCG CAGGCAAACG CCTGTCACTT CGAGTTTTGT
TAA
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| Protein sequence | MSKIDELVFL HQDSTPCHLA VLAESIGLKT RIARQVSDLD PERDRNSFYL IAQKGAALDS
KGVPLIVARL LPHVPIALYQ VERGSLEPES ALLLGVRGLL FSDQRMDLSL TGLRKMVNDE
LWYDRPLISK VFRQLVSRQD SGVELTQDMV AMLQKLTTRE RTIIQLVSSG ARNKEIADRL
CISEHTVKAH ISSIFRKTQS RNRVELLRWS QANACHFEFC
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