More than 300 homologs were found in PanDaTox collection
for query gene Franean1_1895 on replicon NC_009921
Organism: Frankia sp. EAN1pec



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009921  Franean1_1895  extracellular solute-binding protein  100 
 
 
445 aa  887    Frankia sp. EAN1pec  Bacteria  normal  0.854658  normal 
 
 
-
 
NC_007777  Francci3_2252  extracellular solute-binding protein  75.3 
 
 
469 aa  586  1e-166  Frankia sp. CcI3  Bacteria  hitchhiker  0.00844632  hitchhiker  0.0063434 
 
 
-
 
NC_009921  Franean1_3944  extracellular solute-binding protein  38.85 
 
 
464 aa  251  1e-65  Frankia sp. EAN1pec  Bacteria  normal  0.920276  normal  0.0416082 
 
 
-
 
NC_007777  Francci3_2834  extracellular solute-binding protein  38.48 
 
 
459 aa  234  2.0000000000000002e-60  Frankia sp. CcI3  Bacteria  normal  0.873121  normal 
 
 
-
 
NC_007644  Moth_1484  extracellular solute-binding protein  32.7 
 
 
444 aa  190  5e-47  Moorella thermoacetica ATCC 39073  Bacteria  unclonable  0.00000000000980441  normal 
 
 
-
 
NC_004311  BRA1180  sugar ABC transporter, periplasmic sugar-binding protein, putative  27.65 
 
 
421 aa  122  9.999999999999999e-27  Brucella suis 1330  Bacteria  normal  0.409061  n/a   
 
 
-
 
NC_011981  Avi_7590  ABC transporter substrate binding protein (sugar)  28.91 
 
 
447 aa  119  9.999999999999999e-26  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_1666  extracellular solute-binding protein  27.41 
 
 
421 aa  119  9.999999999999999e-26  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3151  extracellular solute-binding protein  29.43 
 
 
426 aa  118  1.9999999999999998e-25  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.345086 
 
 
-
 
NC_007778  RPB_0174  extracellular solute-binding protein  27.34 
 
 
426 aa  117  3e-25  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.396862  normal 
 
 
-
 
NC_014212  Mesil_0955  extracellular solute-binding protein family 1  27.66 
 
 
437 aa  115  2.0000000000000002e-24  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.152307 
 
 
-
 
NC_011004  Rpal_0129  extracellular solute-binding protein family 1  26.67 
 
 
426 aa  115  2.0000000000000002e-24  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.57996  n/a   
 
 
-
 
NC_010483  TRQ2_1696  extracellular solute-binding protein  29.3 
 
 
436 aa  112  1.0000000000000001e-23  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.00506774  n/a   
 
 
-
 
NC_009429  Rsph17025_3553  hypothetical protein  27.67 
 
 
427 aa  109  1e-22  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009939  Dgeo_2919  ABC-type sugar transport system, periplasmic component  28.53 
 
 
407 aa  107  4e-22  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_011369  Rleg2_1773  extracellular solute-binding protein family 1  27.36 
 
 
421 aa  107  6e-22  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0165592 
 
 
-
 
NC_012793  GWCH70_1392  extracellular solute-binding protein family 1  24.49 
 
 
445 aa  105  1e-21  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0289  extracellular solute-binding protein  28.4 
 
 
437 aa  103  5e-21  Petrotoga mobilis SJ95  Bacteria  unclonable  0.00000019091  n/a   
 
 
-
 
NC_013946  Mrub_0322  extracellular solute-binding protein family 1  26.84 
 
 
435 aa  101  3e-20  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0637  extracellular solute-binding protein  27.66 
 
 
425 aa  100  6e-20  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_6751  extracellular solute-binding protein family 1  28.23 
 
 
441 aa  99.4  1e-19  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_0061  extracellular solute-binding protein family 1  25.31 
 
 
462 aa  99.4  1e-19  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6664  extracellular solute-binding protein  28.53 
 
 
452 aa  99.4  1e-19  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0689323 
 
 
-
 
NC_010003  Pmob_0721  extracellular solute-binding protein  27.33 
 
 
437 aa  98.6  2e-19  Petrotoga mobilis SJ95  Bacteria  normal  0.540981  n/a   
 
 
-
 
NC_013521  Sked_18880  carbohydrate-binding protein  28.7 
 
 
460 aa  97.1  6e-19  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.141989  normal  0.173455 
 
 
-
 
NC_013595  Sros_3339  Maltose-binding periplasmic protein/domains- like protein  27.25 
 
 
431 aa  94  5e-18  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.202326 
 
 
-
 
NC_013411  GYMC61_1727  extracellular solute-binding protein family 1  27.87 
 
 
422 aa  94  5e-18  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013411  GYMC61_2845  extracellular solute-binding protein family 1  24.88 
 
 
439 aa  94  5e-18  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012912  Dd1591_3386  extracellular solute-binding protein family 1  26.15 
 
 
440 aa  94  5e-18  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5331  ABC transporter substrate binding protein (sugar)  26.63 
 
 
431 aa  93.6  6e-18  Agrobacterium vitis S4  Bacteria  normal  0.998389  n/a   
 
 
-
 
NC_013235  Namu_0514  extracellular solute-binding protein family 1  26.7 
 
 
426 aa  92.4  1e-17  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_1215  extracellular solute-binding protein family 1  26.19 
 
 
446 aa  91.7  3e-17  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  decreased coverage  0.0000064062  n/a   
 
 
-
 
NC_008751  Dvul_0224  extracellular solute-binding protein  26.09 
 
 
431 aa  90.9  4e-17  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2294  extracellular solute-binding protein family 1  27.81 
 
 
448 aa  90.5  6e-17  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0748  sugar ABC transporter, periplasmic sugar-binding protein, putative  25.74 
 
 
411 aa  89  1e-16  Brucella suis 1330  Bacteria  normal  0.537127  n/a   
 
 
-
 
NC_008699  Noca_1420  extracellular solute-binding protein  26.78 
 
 
424 aa  89.4  1e-16  Nocardioides sp. JS614  Bacteria  normal  0.979516  n/a   
 
 
-
 
NC_009504  BOV_A0698  putative sugar ABC transporter, periplasmic sugar-binding protein  25.41 
 
 
366 aa  89.4  1e-16  Brucella ovis ATCC 25840  Bacteria  normal  0.436581  n/a   
 
 
-
 
NC_011988  Avi_6240  ABC transporter substrate binding protein (maltose)  27.92 
 
 
407 aa  89  2e-16  Agrobacterium vitis S4  Bacteria  normal  0.0994607  n/a   
 
 
-
 
NC_008010  Dgeo_2726  extracellular solute-binding protein  26.78 
 
 
437 aa  88.6  2e-16  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.290956  n/a   
 
 
-
 
NC_013093  Amir_2832  extracellular solute-binding protein family 1  28.8 
 
 
417 aa  89  2e-16  Actinosynnema mirum DSM 43827  Bacteria  normal  0.617934  n/a   
 
 
-
 
NC_009668  Oant_3895  extracellular solute-binding protein  26.07 
 
 
411 aa  87.8  3e-16  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3697  glycerol-3-phosphate transporter periplasmic binding protein  33.03 
 
 
441 aa  87.4  5e-16  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2744  glycerol-3-phosphate transporter periplasmic binding protein  33.94 
 
 
441 aa  86.7  8e-16  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3726  glycerol-3-phosphate transporter periplasmic binding protein  33.94 
 
 
441 aa  86.7  8e-16  Burkholderia pseudomallei 1710b  Bacteria  normal  0.268589  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3209  glycerol-3-phosphate transporter periplasmic binding protein  33.94 
 
 
441 aa  86.7  8e-16  Burkholderia mallei SAVP1  Bacteria  normal  0.0248662  n/a   
 
 
-
 
NC_008836  BMA10229_A1760  glycerol-3-phosphate transporter periplasmic binding protein  33.94 
 
 
441 aa  86.7  8e-16  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2794  glycerol-3-phosphate transporter periplasmic binding protein  33.94 
 
 
441 aa  86.7  8e-16  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4644  extracellular solute-binding protein  30.19 
 
 
409 aa  86.7  8e-16  Sinorhizobium medicae WSM419  Bacteria  normal  0.0265502  normal  0.0904039 
 
 
-
 
NC_007651  BTH_I3021  glycerol-3-phosphate transporter periplasmic binding protein  33.94 
 
 
441 aa  85.9  0.000000000000001  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_012858  Rleg_6631  extracellular solute-binding protein family 1  28.05 
 
 
410 aa  85.9  0.000000000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.325237 
 
 
-
 
NC_013205  Aaci_0075  extracellular solute-binding protein family 1  28.16 
 
 
441 aa  86.3  0.000000000000001  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_20630  extracellular solute-binding protein family 1  24.93 
 
 
414 aa  85.5  0.000000000000002  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0700  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.66 
 
 
458 aa  85.1  0.000000000000002  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_014213  Mesil_3422  ABC-type sugar transport systems permease component  27.67 
 
 
410 aa  85.5  0.000000000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_014213  Mesil_3226  Transcriptional regulator  27.67 
 
 
410 aa  85.5  0.000000000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  0.101031  normal 
 
 
-
 
NC_013131  Caci_4993  extracellular solute-binding protein family 1  25.82 
 
 
432 aa  84.7  0.000000000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0450999  normal  0.012477 
 
 
-
 
NC_014158  Tpau_3527  extracellular solute-binding protein family 1  26.05 
 
 
436 aa  84.7  0.000000000000003  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0845  extracellular solute-binding protein family 1  29.73 
 
 
435 aa  84.7  0.000000000000003  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_0753  extracellular solute-binding protein  25.78 
 
 
437 aa  85.1  0.000000000000003  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_0297  extracellular solute-binding protein family 1  25.16 
 
 
453 aa  84.7  0.000000000000003  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0248346 
 
 
-
 
NC_010483  TRQ2_0116  extracellular solute-binding protein  25.71 
 
 
420 aa  84.3  0.000000000000004  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0118  extracellular solute-binding protein  25.71 
 
 
420 aa  84.3  0.000000000000004  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_3149  extracellular solute-binding protein  30.09 
 
 
427 aa  84.3  0.000000000000004  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011366  Rleg2_5687  extracellular solute-binding protein family 1  27.79 
 
 
401 aa  84.3  0.000000000000004  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.627079  normal 
 
 
-
 
NC_013131  Caci_2170  extracellular solute-binding protein family 1  29.01 
 
 
428 aa  84.3  0.000000000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_2663  extracellular solute-binding protein family 1  27.93 
 
 
468 aa  84  0.000000000000005  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_011725  BCB4264_A0606  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  27.15 
 
 
458 aa  84  0.000000000000005  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_2418  extracellular solute-binding protein family 1  30.06 
 
 
447 aa  83.6  0.000000000000007  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_00780  extracellular solute-binding protein family 1  27.67 
 
 
411 aa  83.2  0.000000000000009  Halothermothrix orenii H 168  Bacteria  normal  0.0480859  n/a   
 
 
-
 
NC_011773  BCAH820_0625  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  25.61 
 
 
458 aa  83.2  0.000000000000009  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005945  BAS0538  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  25.61 
 
 
458 aa  82.8  0.00000000000001  Bacillus anthracis str. Sterne  Bacteria  normal  0.406699  n/a   
 
 
-
 
NC_005957  BT9727_0480  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  25.61 
 
 
458 aa  82.4  0.00000000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0482  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  25.61 
 
 
458 aa  82.8  0.00000000000001  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0569  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  25.61 
 
 
458 aa  82.8  0.00000000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_2712  glycerol-3-phosphate transporter periplasmic binding protein  33.03 
 
 
443 aa  82.4  0.00000000000001  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.290307  n/a   
 
 
-
 
NC_008542  Bcen2424_0395  glycerol-3-phosphate transporter periplasmic binding protein  33.03 
 
 
443 aa  82.4  0.00000000000001  Burkholderia cenocepacia HI2424  Bacteria  normal  0.954301  n/a   
 
 
-
 
NC_009076  BURPS1106A_3755  glycerol-3-phosphate transporter periplasmic binding protein  33.49 
 
 
441 aa  82.8  0.00000000000001  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3270  extracellular solute-binding protein family 1  25.74 
 
 
435 aa  82.8  0.00000000000001  Dickeya dadantii Ech703  Bacteria  normal  0.543416  n/a   
 
 
-
 
NC_010508  Bcenmc03_0374  glycerol-3-phosphate transporter periplasmic binding protein  33.03 
 
 
444 aa  82.8  0.00000000000001  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_0632  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein, putative  25.61 
 
 
458 aa  82  0.00000000000002  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2466  extracellular solute-binding protein family 1  25.48 
 
 
415 aa  82  0.00000000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0930087 
 
 
-
 
NC_014165  Tbis_1886  extracellular solute-binding protein family 1  28.37 
 
 
435 aa  81.6  0.00000000000002  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.23125 
 
 
-
 
NC_011772  BCG9842_B4733  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  25.14 
 
 
458 aa  81.3  0.00000000000003  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_4632  extracellular solute-binding protein  28.6 
 
 
419 aa  81.3  0.00000000000003  Nocardioides sp. JS614  Bacteria  normal  0.448727  n/a   
 
 
-
 
NC_012917  PC1_0631  extracellular solute-binding protein family 1  28.57 
 
 
435 aa  81.6  0.00000000000003  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1099  extracellular solute-binding protein  24.44 
 
 
457 aa  80.9  0.00000000000004  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2057  extracellular solute-binding protein family 1  27.14 
 
 
421 aa  80.9  0.00000000000004  Meiothermus silvanus DSM 9946  Bacteria  normal  0.112802  normal  0.296802 
 
 
-
 
NC_009667  Oant_2485  extracellular solute-binding protein  28.05 
 
 
415 aa  80.9  0.00000000000004  Ochrobactrum anthropi ATCC 49188  Bacteria  decreased coverage  0.00421769  n/a   
 
 
-
 
NC_007510  Bcep18194_A3492  glycerol-3-phosphate transporter periplasmic binding protein  32.11 
 
 
444 aa  80.5  0.00000000000006  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0894  extracellular solute-binding protein family 1  26.69 
 
 
470 aa  80.5  0.00000000000006  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.444762  normal  0.144357 
 
 
-
 
NC_010084  Bmul_0298  glycerol-3-phosphate transporter periplasmic binding protein  33.03 
 
 
444 aa  80.1  0.00000000000007  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_0483  extracellular solute-binding protein  25.76 
 
 
458 aa  80.1  0.00000000000008  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_1316  extracellular solute-binding protein  24.32 
 
 
423 aa  80.1  0.00000000000008  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_013131  Caci_2108  extracellular solute-binding protein family 1  29.21 
 
 
430 aa  79.7  0.00000000000009  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.553068 
 
 
-
 
NC_010002  Daci_5306  extracellular solute-binding protein  26.83 
 
 
431 aa  79.3  0.0000000000001  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.457023 
 
 
-
 
NC_013202  Hmuk_2515  methyl-accepting chemotaxis sensory transducer  28.09 
 
 
833 aa  79.7  0.0000000000001  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.0891124 
 
 
-
 
NC_010551  BamMC406_0323  glycerol-3-phosphate transporter periplasmic binding protein  32.57 
 
 
444 aa  79.3  0.0000000000001  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.839712 
 
 
-
 
NC_012848  Rleg_5048  extracellular solute-binding protein family 1  27.22 
 
 
424 aa  78.6  0.0000000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.133709  normal 
 
 
-
 
NC_013174  Jden_2244  extracellular solute-binding protein family 1  25.48 
 
 
455 aa  78.6  0.0000000000002  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.846858 
 
 
-
 
NC_008390  Bamb_0314  glycerol-3-phosphate transporter periplasmic binding protein  30.7 
 
 
444 aa  79  0.0000000000002  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
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