| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0118 |
|---|
| Symbol | |
|---|
| ID | 5171235 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | - |
|---|
| Start bp | 111909 |
|---|
| End bp | 113171 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640562619 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001243723 |
|---|
| Protein GI | 148269263 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGAAGT TTTTGGTCAT TCTCATGGTA GTTCTTCTCG CAGTTCTGGC ACTGTCCAAA
ACCAAGATAG TCTTCTGGAC CATGTCGTTG AAACCGACCT TCACAGATTT CATTCAGGGA
ATCATCGACA GGTATGAAGA GTTGAACCCG GATGTTGAAA TCGTCTGGGA AGATGTTCCA
TGGGACGTTC TCCAGCAGAA GCTTCTTGCG GCCTTCTCTT CTGGAAATCC ACCCGATGTT
GTGAACCTGA ACGCTCAGTG GACCATCGAA TTCGCTCAGA AGAAAGTCCT GTTCCCCTTG
AACGATTTGC TACCCGAAGA AGTTATCAAC CAGTACTTCG ACAACATGAT CAAAGGACTC
ACTTGGAAAG ACGGAATTTA TGGAATTCCC TGGTACACAG CTGTGGACGT GATATTCTAC
AACAAAGAGA TCTTCGAAAA AGCTGGACTG GATCCGAAGT ATCCACCTCG AACCTGGGAT
GAAATACTCC TCTACTCAGT TTTGATCAAG GAAAAAACGG GAAAATACGG TGCTCTTCCT
ACGATCTTCC AAGATCCCTC TGCGATCTTC AACTGGGACG GATTGAATCT CTACACGGTG
GATGAAAACA ACAGAATAAA AGAAGTGCTC TTCGACAGAC CGGAATACGC TCACACTCTC
AACAAATGGG CCACTCTCTA CAAACAGAAG TACATCCCGA GTGAAATCGT CCAGGGTGGA
GAATGGACGA GAGCAACAGA ACTCTATCAG GCTGGAGAAC TCGCCATGTT GATCACTGGT
GTTCAGTTCG CGGACAGAGT GAAATGGAAC GCTCCGGAAA TATACGAAAA ATCCGATGTT
GCTCCTATTC CAGCTCCAAA ACCGGGTGTG AGAATGAGTG GATGGTACTC AACTCTGAAC
GTAGTCAGAG GATCCAAGAA TCCTAAGGAA GCCGCTAAAT TCGCAGCGTT CGTTGCAAAC
CTCGAGAACC AGATCGCATT CTGTAAGCTC GTGACCATAT TCCCGACTCT CAAAGCAGCG
GTGAACGATC CGTGGTTCTC AAAAGACGAT GGAACGCTCG CTGCCAAAGC CAGGATCATG
GGAGCCAAGT ATCTTGAGAA CATCACGTTC TACAACGATG ACATACCATT CAGAAAAGAA
GCGTTCGACA GACTGAAGGA TGCCATTATT CAGGTGTTCC TTGGACAGAA AGATCCCGAA
ACGGCGCTCA AAGAGACCGC GAAGTACTGG AGATATCTCA TTCAGACTCA GCAATCGAAA
TAA
|
|---|
| Protein sequence | MRKFLVILMV VLLAVLALSK TKIVFWTMSL KPTFTDFIQG IIDRYEELNP DVEIVWEDVP
WDVLQQKLLA AFSSGNPPDV VNLNAQWTIE FAQKKVLFPL NDLLPEEVIN QYFDNMIKGL
TWKDGIYGIP WYTAVDVIFY NKEIFEKAGL DPKYPPRTWD EILLYSVLIK EKTGKYGALP
TIFQDPSAIF NWDGLNLYTV DENNRIKEVL FDRPEYAHTL NKWATLYKQK YIPSEIVQGG
EWTRATELYQ AGELAMLITG VQFADRVKWN APEIYEKSDV APIPAPKPGV RMSGWYSTLN
VVRGSKNPKE AAKFAAFVAN LENQIAFCKL VTIFPTLKAA VNDPWFSKDD GTLAAKARIM
GAKYLENITF YNDDIPFRKE AFDRLKDAII QVFLGQKDPE TALKETAKYW RYLIQTQQSK
|
|---|
| |