More than 300 homologs were found in PanDaTox collection
for query gene RPB_3939 on replicon NC_007778
Organism: Rhodopseudomonas palustris HaA2



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007778  RPB_3939  short-chain dehydrogenase/reductase SDR  100 
 
 
266 aa  545  1e-154  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0544906  normal 
 
 
-
 
NC_011004  Rpal_1774  short-chain dehydrogenase/reductase SDR  87.55 
 
 
266 aa  490  9.999999999999999e-139  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3700  short-chain dehydrogenase/reductase SDR  93.12 
 
 
267 aa  455  1e-127  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.209869  normal 
 
 
-
 
NC_009485  BBta_6672  putative short-chain dehydrogenase/reductase  79.85 
 
 
264 aa  451  1.0000000000000001e-126  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.157918  normal 
 
 
-
 
NC_007925  RPC_4268  short-chain dehydrogenase/reductase SDR  81.06 
 
 
269 aa  448  1e-125  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.52559  normal  0.660743 
 
 
-
 
NC_007908  Rfer_0646  short-chain dehydrogenase/reductase SDR  48.85 
 
 
256 aa  233  3e-60  Rhodoferax ferrireducens T118  Bacteria  normal  0.965194  n/a   
 
 
-
 
NC_007348  Reut_B3663  Short-chain dehydrogenase/reductase SDR  47.62 
 
 
270 aa  232  5e-60  Ralstonia eutropha JMP134  Bacteria  normal  0.712953  n/a   
 
 
-
 
NC_014165  Tbis_2447  short-chain dehydrogenase/reductase SDR  49.03 
 
 
264 aa  219  3e-56  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.115187 
 
 
-
 
NC_010505  Mrad2831_1821  short-chain dehydrogenase/reductase SDR  49.42 
 
 
258 aa  210  2e-53  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.748  normal  0.0174696 
 
 
-
 
NC_007974  Rmet_3982  putative short-chain dehydrogenase/reductase  47.25 
 
 
270 aa  206  3e-52  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.0102992 
 
 
-
 
NC_013595  Sros_7224  short-chain dehydrogenase/reductase SDR  45.72 
 
 
263 aa  206  4e-52  Streptosporangium roseum DSM 43021  Bacteria  normal  0.542402  normal  0.392428 
 
 
-
 
NC_008347  Mmar10_1652  short-chain dehydrogenase/reductase SDR  44.94 
 
 
263 aa  204  1e-51  Maricaulis maris MCS10  Bacteria  normal  normal  0.406649 
 
 
-
 
NC_009953  Sare_3115  short-chain dehydrogenase/reductase SDR  47.58 
 
 
263 aa  198  1.0000000000000001e-49  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0100122 
 
 
-
 
NC_007333  Tfu_0361  short chain dehydrogenase/reductase family oxidoreductase  46.54 
 
 
264 aa  196  5.000000000000001e-49  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_2915  short-chain dehydrogenase/reductase SDR  46.69 
 
 
318 aa  192  6e-48  Salinispora tropica CNB-440  Bacteria  normal  0.718315  normal 
 
 
-
 
NC_008010  Dgeo_2398  short-chain dehydrogenase/reductase SDR  42.02 
 
 
269 aa  191  1e-47  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.0863327  n/a   
 
 
-
 
NC_013159  Svir_16720  short-chain dehydrogenase of unknown substrate specificity  44.68 
 
 
263 aa  188  1e-46  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_1642  short-chain dehydrogenase/reductase SDR  42.18 
 
 
295 aa  184  9e-46  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.347777 
 
 
-
 
NC_013441  Gbro_0065  short-chain dehydrogenase/reductase SDR  45.13 
 
 
266 aa  184  2.0000000000000003e-45  Gordonia bronchialis DSM 43247  Bacteria  normal  0.305038  n/a   
 
 
-
 
NC_008699  Noca_1829  short-chain dehydrogenase/reductase SDR  42.31 
 
 
265 aa  182  5.0000000000000004e-45  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_6390  short-chain dehydrogenase/reductase SDR  40.78 
 
 
253 aa  178  7e-44  Frankia sp. EAN1pec  Bacteria  normal  0.561861  normal  0.0707299 
 
 
-
 
NC_014210  Ndas_2919  short-chain dehydrogenase/reductase SDR  42.86 
 
 
258 aa  177  1e-43  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.236452 
 
 
-
 
NC_008699  Noca_3864  short-chain dehydrogenase/reductase SDR  42.32 
 
 
272 aa  176  2e-43  Nocardioides sp. JS614  Bacteria  normal  0.239967  n/a   
 
 
-
 
NC_014148  Plim_2248  short-chain dehydrogenase/reductase SDR  36.12 
 
 
264 aa  169  3e-41  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_4800  short-chain dehydrogenase/reductase SDR  37.32 
 
 
269 aa  167  2e-40  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.654543  normal 
 
 
-
 
NC_008146  Mmcs_1268  short-chain dehydrogenase/reductase SDR  35.14 
 
 
263 aa  154  1e-36  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_1285  short-chain dehydrogenase/reductase SDR  35.14 
 
 
263 aa  154  1e-36  Mycobacterium sp. KMS  Bacteria  normal  0.428856  normal  0.173588 
 
 
-
 
NC_009077  Mjls_1294  short-chain dehydrogenase/reductase SDR  34.32 
 
 
263 aa  154  2e-36  Mycobacterium sp. JLS  Bacteria  normal  0.625854  normal  0.126067 
 
 
-
 
NC_013947  Snas_2914  short-chain dehydrogenase/reductase SDR  37.95 
 
 
258 aa  133  1.9999999999999998e-30  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0109588  hitchhiker  0.00528047 
 
 
-
 
NC_011138  MADE_01992  short chain dehydrogenase  29.85 
 
 
276 aa  119  3.9999999999999996e-26  Alteromonas macleodii 'Deep ecotype'  Bacteria  unclonable  0.00000620206  n/a   
 
 
-
 
NC_013730  Slin_2192  short-chain dehydrogenase/reductase SDR  33.2 
 
 
256 aa  114  2.0000000000000002e-24  Spirosoma linguale DSM 74  Bacteria  normal  hitchhiker  0.0046226 
 
 
-
 
NC_011892  Mnod_8333  short-chain dehydrogenase/reductase SDR  33.6 
 
 
257 aa  114  2.0000000000000002e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.319832  n/a   
 
 
-
 
NC_008254  Meso_2966  short-chain dehydrogenase/reductase SDR  33.67 
 
 
260 aa  114  2.0000000000000002e-24  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4194  short chain dehydrogenase  38.69 
 
 
253 aa  112  5e-24  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.896625 
 
 
-
 
NC_010625  Bphy_6823  short-chain dehydrogenase/reductase SDR  32.93 
 
 
258 aa  110  3e-23  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_3282  short-chain dehydrogenase/reductase SDR  32.82 
 
 
268 aa  109  4.0000000000000004e-23  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_3859  3-hydroxybutyrate dehydrogenase  31.82 
 
 
259 aa  108  1e-22  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2773  short-chain dehydrogenase/reductase SDR  33.68 
 
 
253 aa  107  2e-22  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_0075  short-chain dehydrogenase/reductase SDR  35.57 
 
 
250 aa  106  3e-22  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_6830  oxidoreductase  33.2 
 
 
265 aa  107  3e-22  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.356358 
 
 
-
 
NC_011725  BCB4264_A4137  3-hydroxybutyrate dehydrogenase  32.64 
 
 
258 aa  106  4e-22  Bacillus cereus B4264  Bacteria  normal  0.531787  n/a   
 
 
-
 
NC_011830  Dhaf_2647  3-ketoacyl-(acyl-carrier-protein) reductase  29.15 
 
 
252 aa  106  4e-22  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.0000389723  n/a   
 
 
-
 
NC_011773  BCAH820_4051  3-hydroxybutyrate dehydrogenase  32.64 
 
 
258 aa  105  5e-22  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_013169  Ksed_19760  dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein  32.79 
 
 
256 aa  105  5e-22  Kytococcus sedentarius DSM 20547  Bacteria  decreased coverage  0.000927245  normal  0.0200652 
 
 
-
 
NC_009656  PSPA7_3623  short chain dehydrogenase  36.04 
 
 
253 aa  105  5e-22  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0211534  n/a   
 
 
-
 
NC_011658  BCAH187_A4157  3-hydroxybutyrate dehydrogenase  32.64 
 
 
258 aa  106  5e-22  Bacillus cereus AH187  Bacteria  normal  0.212799  n/a   
 
 
-
 
NC_005957  BT9727_3773  3-hydroxybutyrate dehydrogenase  32.64 
 
 
258 aa  105  6e-22  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS3941  3-hydroxybutyrate dehydrogenase  32.22 
 
 
258 aa  104  1e-21  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_4249  3-hydroxybutyrate dehydrogenase  32.22 
 
 
258 aa  104  1e-21  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_4084  3-hydroxybutyrate dehydrogenase  31.95 
 
 
262 aa  104  2e-21  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1425  short chain dehydrogenase  35.68 
 
 
253 aa  104  2e-21  Pseudomonas putida W619  Bacteria  normal  0.857979  normal  0.357324 
 
 
-
 
NC_009719  Plav_2714  short-chain dehydrogenase/reductase SDR  31.09 
 
 
294 aa  103  2e-21  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.199953  normal 
 
 
-
 
NC_008009  Acid345_0642  short-chain dehydrogenase/reductase SDR  34 
 
 
252 aa  103  2e-21  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.220005 
 
 
-
 
NC_008740  Maqu_2203  short chain dehydrogenase  28.17 
 
 
273 aa  103  2e-21  Marinobacter aquaeolei VT8  Bacteria  decreased coverage  0.000419362  n/a   
 
 
-
 
NC_007488  RSP_3972  3-ketoacyl-(acyl-carrier-protein) reductase  31.49 
 
 
263 aa  103  4e-21  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_1946  short chain dehydrogenase/reductase family oxidoreductase  30.74 
 
 
262 aa  102  5e-21  Pseudomonas putida KT2440  Bacteria  normal  unclonable  0.000000538802 
 
 
-
 
NC_011772  BCG9842_B1101  3-hydroxybutyrate dehydrogenase  31.8 
 
 
258 aa  102  5e-21  Bacillus cereus G9842  Bacteria  normal  normal  0.845922 
 
 
-
 
NC_009439  Pmen_2680  short chain dehydrogenase  33 
 
 
253 aa  102  6e-21  Pseudomonas mendocina ymp  Bacteria  normal  0.313407  normal  0.819387 
 
 
-
 
NC_010320  Teth514_1783  3-ketoacyl-(acyl-carrier-protein) reductase  29.41 
 
 
255 aa  101  1e-20  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.000332127  n/a   
 
 
-
 
NC_012669  Bcav_3510  short-chain dehydrogenase/reductase SDR  36.45 
 
 
251 aa  101  1e-20  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.439576 
 
 
-
 
NC_013440  Hoch_5364  short-chain dehydrogenase/reductase SDR  32.82 
 
 
267 aa  101  1e-20  Haliangium ochraceum DSM 14365  Bacteria  normal  0.676071  normal 
 
 
-
 
NC_010322  PputGB1_1396  short chain dehydrogenase  35.18 
 
 
253 aa  101  1e-20  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_1817  short chain dehydrogenase  35.68 
 
 
253 aa  100  2e-20  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009051  Memar_0925  3-ketoacyl-(acyl-carrier-protein) reductase  32.99 
 
 
251 aa  100  2e-20  Methanoculleus marisnigri JR1  Archaea  normal  0.568448  n/a   
 
 
-
 
NC_009565  TBFG_10868  short chain dehydrogenase  29.48 
 
 
275 aa  100  2e-20  Mycobacterium tuberculosis F11  Bacteria  normal  hitchhiker  0.00362326 
 
 
-
 
NC_008148  Rxyl_2457  short-chain dehydrogenase/reductase SDR  29.2 
 
 
291 aa  100  3e-20  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0300911  n/a   
 
 
-
 
NC_008345  Sfri_2067  short-chain dehydrogenase/reductase SDR  34.03 
 
 
253 aa  99.8  4e-20  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_2914  short chain dehydrogenase  29.84 
 
 
255 aa  99.4  5e-20  Trichodesmium erythraeum IMS101  Bacteria  normal  0.892644  normal  0.135282 
 
 
-
 
NC_009512  Pput_3894  short chain dehydrogenase  35.68 
 
 
253 aa  99  7e-20  Pseudomonas putida F1  Bacteria  normal  0.933722  normal  0.0806905 
 
 
-
 
NC_012803  Mlut_09850  short-chain dehydrogenase of unknown substrate specificity  35.06 
 
 
297 aa  99  8e-20  Micrococcus luteus NCTC 2665  Bacteria  normal  0.414551  n/a   
 
 
-
 
NC_008148  Rxyl_3046  short-chain dehydrogenase/reductase SDR  33.33 
 
 
252 aa  99  8e-20  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_6716  short-chain dehydrogenase/reductase SDR  28.88 
 
 
247 aa  98.2  1e-19  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_2729  3-hydroxybutyrate dehydrogenase  30.71 
 
 
258 aa  97.8  1e-19  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.131703  n/a   
 
 
-
 
NC_013525  Tter_0268  short-chain dehydrogenase/reductase SDR  31.77 
 
 
250 aa  97.4  2e-19  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013205  Aaci_2186  3-ketoacyl-(acyl-carrier-protein) reductase  30.25 
 
 
241 aa  97.8  2e-19  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_5919  short-chain dehydrogenase/reductase SDR  31.98 
 
 
295 aa  97.4  2e-19  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_1562  short-chain dehydrogenase/reductase SDR  30.77 
 
 
275 aa  97.4  2e-19  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0498761  n/a   
 
 
-
 
NC_014165  Tbis_2317  short-chain dehydrogenase/reductase SDR  32.37 
 
 
263 aa  97.8  2e-19  Thermobispora bispora DSM 43833  Bacteria  normal  0.49068  normal  0.325129 
 
 
-
 
NC_009943  Dole_2194  short-chain dehydrogenase/reductase SDR  29.58 
 
 
280 aa  97.4  2e-19  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.0155651  n/a   
 
 
-
 
NC_014158  Tpau_1547  short-chain dehydrogenase/reductase SDR  33.49 
 
 
269 aa  96.7  3e-19  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.255418  n/a   
 
 
-
 
NC_013131  Caci_2035  short-chain dehydrogenase/reductase SDR  33.16 
 
 
248 aa  97.1  3e-19  Catenulispora acidiphila DSM 44928  Bacteria  decreased coverage  0.000355798  normal  0.0941785 
 
 
-
 
NC_008786  Veis_2457  short-chain dehydrogenase/reductase SDR  30.16 
 
 
265 aa  97.1  3e-19  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2619  short-chain dehydrogenase/reductase SDR  33.33 
 
 
287 aa  96.7  3e-19  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.38962  normal  0.0399907 
 
 
-
 
NC_003295  RSc2351  3-ketoacyl-(acyl-carrier-protein) reductase  31.43 
 
 
252 aa  96.7  4e-19  Ralstonia solanacearum GMI1000  Bacteria  normal  0.647461  normal 
 
 
-
 
NC_008784  BMASAVP1_1014  short chain dehydrogenase/reductase family oxidoreductase  31.28 
 
 
251 aa  96.7  4e-19  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA1991  short chain dehydrogenase/reductase family oxidoreductase  31.28 
 
 
251 aa  96.7  4e-19  Burkholderia mallei ATCC 23344  Bacteria  normal  0.371693  n/a   
 
 
-
 
NC_007355  Mbar_A0777  2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase  33.33 
 
 
256 aa  96.7  4e-19  Methanosarcina barkeri str. Fusaro  Archaea  normal  unclonable  0.000000000602932 
 
 
-
 
NC_007435  BURPS1710b_A1390  short chain dehydrogenase/reductase family oxidoreductase  31.28 
 
 
251 aa  96.7  4e-19  Burkholderia pseudomallei 1710b  Bacteria  normal  0.399104  n/a   
 
 
-
 
NC_009079  BMA10247_A2278  short chain dehydrogenase/reductase family oxidoreductase  31.28 
 
 
251 aa  96.7  4e-19  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A3043  short chain dehydrogenase/reductase family oxidoreductase  31.28 
 
 
251 aa  96.7  4e-19  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1302  short chain dehydrogenase/reductase family oxidoreductase  31.28 
 
 
251 aa  96.7  4e-19  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A3172  short chain dehydrogenase/reductase family oxidoreductase  31.28 
 
 
251 aa  96.3  5e-19  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_1255  3-ketoacyl-(acyl-carrier-protein) reductase  30.93 
 
 
247 aa  96.3  5e-19  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc1769  hypothetical protein  28.77 
 
 
300 aa  95.9  7e-19  Ralstonia solanacearum GMI1000  Bacteria  normal  0.657278  normal  0.187147 
 
 
-
 
NC_008726  Mvan_3997  short-chain dehydrogenase/reductase SDR  29.75 
 
 
253 aa  95.5  7e-19  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.895675 
 
 
-
 
NC_008148  Rxyl_0346  short-chain dehydrogenase/reductase SDR  31.68 
 
 
256 aa  95.9  7e-19  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0244456  n/a   
 
 
-
 
NC_011831  Cagg_1619  short-chain dehydrogenase/reductase SDR  29.67 
 
 
253 aa  95.9  7e-19  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.901509  normal  0.0346671 
 
 
-
 
NC_008699  Noca_2507  short-chain dehydrogenase/reductase SDR  34.85 
 
 
253 aa  95.5  9e-19  Nocardioides sp. JS614  Bacteria  normal  0.024976  n/a   
 
 
-
 
NC_013411  GYMC61_1779  short-chain dehydrogenase/reductase SDR  31.15 
 
 
249 aa  94.7  1e-18  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007908  Rfer_0271  short-chain dehydrogenase/reductase SDR  32.21 
 
 
254 aa  94.7  1e-18  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>